Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86804 * 119.99467 * 2 1 4 4 H 1.48497 * 109.47124 * 239.99564 * 3 2 1 5 5 H 1.48497 * 109.47381 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46766 * 120.00072 * 3 2 1 7 7 C 1.39921 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00083 * 195.51002 * 7 2 1 9 9 C 1.41408 * 119.99909 * 15.50665 * 7 2 1 10 10 C 1.40788 * 120.20828 * 25.43238 * 9 7 2 11 11 C 1.37651 * 119.89864 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32834 * 359.71925 * 11 10 9 13 13 C 1.39316 * 120.41876 * 0.55249 * 12 11 10 14 14 N 1.39697 * 119.95084 * 179.71830 * 13 12 11 15 15 C 1.39468 * 120.00358 * 327.45657 * 14 13 12 16 16 C 1.40808 * 119.67282 * 334.83360 * 15 14 13 17 17 N 1.30726 * 122.60982 * 179.97438 * 16 15 14 18 18 C 1.33716 * 121.10143 * 0.02562 * 17 16 15 19 19 N 1.31169 * 138.15990 * 179.97438 * 18 17 16 20 20 O 1.21394 * 109.21035 * 180.02562 * 19 18 17 21 21 N 1.21459 * 116.29605 * 0.02562 * 20 19 18 22 22 C 1.30976 * 109.00161 * 359.97438 * 21 20 19 23 23 C 1.36758 * 119.67683 * 154.82081 * 15 14 13 24 24 C 1.38342 * 120.09424 * 359.45200 * 13 12 11 25 25 H 0.96998 * 120.00467 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.05350 * 0.03565 * 10 9 7 27 27 H 1.08002 * 119.83616 * 179.97438 * 11 10 9 28 28 H 1.08007 * 119.78911 * 180.27441 * 12 11 10 29 29 H 0.97003 * 119.99587 * 147.44971 * 14 13 12 30 30 H 1.08002 * 118.69754 * 359.97438 * 16 15 14 31 31 H 1.08004 * 121.05644 * 359.97438 * 23 15 14 32 32 H 1.07997 * 120.16591 * 180.25052 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 3.0960 1.6966 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6965 1.2126 7 6 2.0080 -1.2117 -0.0005 8 1 3.0586 -1.2288 0.2496 9 6 1.3396 -2.4139 -0.3285 10 6 0.1915 -2.3867 -1.1428 11 6 -0.4544 -3.5607 -1.4577 12 6 0.0228 -4.7709 -0.9819 13 6 1.1544 -4.8130 -0.1704 14 7 1.6238 -6.0384 0.3088 15 6 0.7255 -7.0670 0.5916 16 6 -0.6102 -6.7574 0.9122 17 7 -1.4999 -7.6753 1.1862 18 6 -1.1789 -8.9733 1.1756 19 7 -1.7664 -10.1269 1.3865 20 8 -0.9593 -11.0204 1.2316 21 7 0.1672 -10.6815 0.9295 22 6 0.2118 -9.3751 0.8470 23 6 1.1504 -8.3664 0.5544 24 6 1.8172 -3.6436 0.1569 25 1 -0.4851 0.8400 0.0004 26 1 -0.1818 -1.4461 -1.5201 27 1 -1.3354 -3.5386 -2.0821 28 1 -0.4883 -5.6873 -1.2380 29 1 2.5747 -6.1738 0.4448 30 1 -0.9117 -5.7206 0.9326 31 1 2.1731 -8.6113 0.3087 32 1 2.6969 -3.6753 0.7825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176694556.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = 178.480971 kcal Electronic energy + Delta-G solvation = -20294.012436 eV Core-core repulsion = 17032.020223 eV Total energy + Delta-G solvation = -3261.992212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.59731 -40.22153 -38.08203 -35.84334 -34.79192 -33.59824 -33.23761 -31.27052 -30.13460 -27.91338 -26.49113 -25.34718 -24.65884 -21.83808 -21.11531 -20.93511 -19.69525 -18.95004 -18.48644 -17.53285 -16.70255 -15.85528 -15.41666 -15.30849 -14.97267 -14.28791 -14.07772 -13.48722 -13.34054 -13.10145 -13.00551 -12.47929 -12.36576 -11.88766 -11.79594 -11.63640 -11.30382 -11.15540 -10.75088 -10.51387 -10.19555 -9.83077 -9.73237 -9.58465 -9.35160 -8.52061 -7.75567 -7.00931 -6.85278 -4.61170 -0.13303 1.00994 1.93707 2.56049 2.70690 2.76043 2.96425 2.97737 3.05057 3.25602 3.39666 3.62524 3.70669 3.79075 4.28347 4.41508 4.50534 4.94883 5.35414 5.41600 5.51777 5.69900 5.90362 6.07597 6.12292 6.62218 6.67839 6.79272 6.85360 7.00644 7.25259 7.37832 7.46553 7.75049 7.81575 7.89254 8.06379 8.40092 8.49022 8.66068 8.70259 9.98439 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.047697 B = 0.003357 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.899650 B = 8338.690697 C = 8590.545177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.129 3.871 10 C -0.169 4.169 11 C -0.082 4.082 12 C -0.273 4.273 13 C 0.161 3.839 14 N -0.655 5.655 15 C 0.192 3.808 16 C 0.198 3.802 17 N -0.422 5.422 18 C 0.156 3.844 19 N -0.333 5.333 20 O 0.373 5.627 21 N -0.358 5.358 22 C 0.014 3.986 23 C -0.150 4.150 24 C -0.246 4.246 25 H 0.284 0.716 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.410 0.590 30 H 0.195 0.805 31 H 0.151 0.849 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.974 -8.078 0.511 8.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.126 3.874 10 C -0.189 4.189 11 C -0.101 4.101 12 C -0.295 4.295 13 C 0.068 3.932 14 N -0.276 5.276 15 C 0.080 3.920 16 C 0.006 3.994 17 N -0.134 5.134 18 C -0.104 4.104 19 N -0.054 5.054 20 O 0.139 5.861 21 N -0.087 5.087 22 C -0.141 4.141 23 C -0.186 4.186 24 C -0.268 4.268 25 H 0.095 0.905 26 H 0.140 0.860 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.247 0.753 30 H 0.212 0.788 31 H 0.168 0.832 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.381 -8.945 0.877 8.996 hybrid contribution 1.799 1.344 -0.208 2.255 sum 2.180 -7.601 0.669 7.936 Atomic orbital electron populations 1.69787 1.07578 1.29728 1.34071 1.25933 0.94811 1.01500 0.92075 0.86306 0.80124 0.79931 0.80089 1.18709 1.20189 1.18909 1.19582 0.97391 0.90839 1.40863 0.90230 1.17412 0.90879 0.91357 0.87749 1.21428 0.98973 0.97041 1.01413 1.20531 0.98263 0.92506 0.98769 1.20181 1.02303 0.97187 1.09808 1.17456 0.96634 0.82888 0.96188 1.42221 1.07762 1.10460 1.67145 1.18362 0.91820 0.88450 0.93332 1.23911 0.87378 0.99894 0.88203 1.67282 1.34360 0.96522 1.15195 1.23186 0.88809 0.93479 1.04962 1.75187 1.15203 0.96524 1.18524 1.85404 1.11248 1.31988 1.57462 1.75166 1.01294 1.13072 1.19181 1.23118 0.97179 0.90817 1.02995 1.19391 1.00167 0.87573 1.11445 1.20699 1.05603 0.91152 1.09377 0.90480 0.85992 0.88681 0.89093 0.75302 0.78834 0.83170 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.50 10.88 55.55 0.60 -17.90 16 2 C 0.08 1.73 5.18 -17.35 -0.09 1.64 16 3 Si 0.91 17.05 29.59 -169.99 -5.03 12.02 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 5 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.46 -10.86 9.06 -37.75 -0.34 -11.20 16 8 H 0.08 1.80 7.89 -52.48 -0.41 1.39 16 9 C 0.13 3.02 5.57 -106.85 -0.60 2.43 16 10 C -0.17 -3.87 8.68 -38.83 -0.34 -4.20 16 11 C -0.08 -1.66 10.01 -39.69 -0.40 -2.06 16 12 C -0.27 -5.14 7.72 -39.08 -0.30 -5.45 16 13 C 0.16 2.93 5.85 -83.83 -0.49 2.44 16 14 N -0.66 -9.37 5.43 -8.56 -0.05 -9.42 16 15 C 0.19 2.71 6.01 -83.95 -0.50 2.20 16 16 C 0.20 3.01 8.98 -17.05 -0.15 2.86 16 17 N -0.42 -6.98 10.43 -12.59 -0.13 -7.11 16 18 C 0.16 2.55 8.86 -157.12 -1.39 1.16 16 19 N -0.33 -5.24 12.28 30.66 0.38 -4.86 16 20 O 0.37 5.26 11.66 26.96 0.31 5.57 16 21 N -0.36 -5.21 12.29 31.78 0.39 -4.82 16 22 C 0.01 0.21 7.75 -83.04 -0.64 -0.43 16 23 C -0.15 -1.98 10.05 -39.13 -0.39 -2.38 16 24 C -0.25 -5.07 9.70 -38.67 -0.38 -5.44 16 25 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 26 H 0.12 2.93 6.14 -52.49 -0.32 2.61 16 27 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.60 6.60 -52.48 -0.35 1.25 16 29 H 0.41 4.84 8.87 -40.82 -0.36 4.47 16 30 H 0.20 2.98 6.22 -52.49 -0.33 2.66 16 31 H 0.15 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.10 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -24.80 285.52 -7.41 -32.21 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -2.17 Total: 8.43 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: -6.02 Total: -18.44 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 1.19 Total: -44.10 kcal Atomic # 8 Polarization: 5.26 SS G_CDS: 0.31 Total: 5.57 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -24.80 -7.41 -32.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176694556.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.689 kcal (2) G-P(sol) polarization free energy of solvation -24.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds