Wall clock time and date at job start Tue Mar 31 2020 05:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35968 * 117.00340 * 2 1 4 4 C 1.38723 * 119.96244 * 0.02562 * 3 2 1 5 5 C 1.38188 * 120.10871 * 179.74466 * 4 3 2 6 6 C 1.38705 * 120.03125 * 0.50913 * 5 4 3 7 7 N 1.40267 * 120.03706 * 179.74085 * 6 5 4 8 8 C 1.34782 * 119.99709 * 47.26479 * 7 6 5 9 9 S 1.71199 * 119.99999 * 355.68745 * 8 7 6 10 10 N 1.34781 * 119.99914 * 175.41279 * 8 7 6 11 11 C 1.37040 * 119.99751 * 180.27643 * 10 8 7 12 12 H 1.08000 * 120.00589 * 359.97438 * 11 10 8 13 13 C 1.38887 * 119.99613 * 180.02562 * 11 10 8 14 14 N 1.31472 * 119.99927 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99566 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47179 * 60.00241 * 15 13 11 17 17 H 1.48504 * 109.46853 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47389 * 299.99703 * 15 13 11 19 19 C 1.39303 * 119.92914 * 359.47245 * 6 5 4 20 20 O 1.35976 * 120.05250 * 180.25112 * 19 6 5 21 21 C 1.42899 * 116.99550 * 179.97438 * 20 19 6 22 22 C 1.38506 * 119.88837 * 0.27179 * 19 6 5 23 23 H 1.09000 * 109.47266 * 59.99591 * 1 2 3 24 24 H 1.08997 * 109.47437 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46748 * 300.00447 * 1 2 3 26 26 H 1.08008 * 119.95014 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.98509 * 180.25710 * 5 4 3 28 28 H 0.97003 * 120.00608 * 227.26728 * 7 6 5 29 29 H 0.97001 * 119.99717 * 0.27996 * 10 8 7 30 30 H 0.97004 * 120.00290 * 179.97438 * 14 13 11 31 31 H 1.09006 * 109.46982 * 179.97438 * 21 20 19 32 32 H 1.09000 * 109.47259 * 299.99790 * 21 20 19 33 33 H 1.09004 * 109.47218 * 60.00484 * 21 20 19 34 34 H 1.08005 * 120.01167 * 179.97438 * 22 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2114 0.0000 4 6 1.2902 2.3744 0.0005 5 6 1.9144 3.6072 0.0059 6 6 3.2993 3.6841 0.0000 7 7 3.9331 4.9354 -0.0001 8 6 3.5347 5.8926 0.8611 9 16 2.1846 5.6210 1.8781 10 7 4.2025 7.0616 0.9254 11 6 3.8007 8.0326 1.8050 12 1 2.9488 7.8615 2.4464 13 6 4.4886 9.2374 1.8709 14 7 5.5254 9.4460 1.0899 15 14 3.9406 10.5613 3.0694 16 1 4.0086 10.0331 4.4555 17 1 4.8335 11.7414 2.9456 18 1 2.5445 10.9618 2.7602 19 6 4.0602 2.5172 -0.0001 20 8 5.4180 2.5896 -0.0007 21 6 6.1336 1.3527 -0.0002 22 6 3.4312 1.2832 -0.0001 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.2116 2.3163 0.0014 27 1 1.3237 4.5114 0.0105 28 1 4.6581 5.1119 -0.6199 29 1 4.9674 7.2155 0.3491 30 1 6.0056 10.2876 1.1356 31 1 7.2051 1.5528 -0.0012 32 1 5.8711 0.7814 0.8902 33 1 5.8704 0.7803 -0.8898 34 1 4.0192 0.3772 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200978971.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:34 Heat of formation + Delta-G solvation = -49.785588 kcal Electronic energy + Delta-G solvation = -19462.512395 eV Core-core repulsion = 16293.773002 eV Total energy + Delta-G solvation = -3168.739393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.60249 -39.98134 -39.51691 -37.75505 -35.88983 -33.86777 -31.41000 -30.23345 -28.05758 -28.00849 -27.04040 -24.72312 -22.98532 -22.89157 -20.70776 -19.84834 -19.20992 -17.98969 -17.63526 -17.10159 -16.99636 -16.73541 -16.35017 -16.14460 -15.79279 -15.55756 -15.08860 -14.91359 -14.02771 -13.76620 -13.57772 -13.51532 -13.14111 -12.90141 -12.82767 -12.46061 -12.39211 -12.13176 -12.05835 -11.89550 -11.70293 -11.32857 -10.49354 -9.57681 -8.94750 -8.87589 -8.53211 -7.87510 -6.25514 0.28143 0.48733 0.85675 1.38582 1.47859 1.55447 1.57152 2.08450 2.20381 2.34479 2.54402 2.83180 2.91209 3.23635 3.92935 4.16319 4.21819 4.28443 4.42485 4.47475 4.51127 4.59821 4.67824 4.74831 4.82380 4.95021 5.19660 5.23728 5.41176 5.49095 5.56984 5.84544 6.31380 6.39020 6.42473 6.57674 6.92054 7.10359 8.25929 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025367 B = 0.004457 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.533089 B = 6281.109406 C = 7155.766166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.158 3.842 4 C -0.239 4.239 5 C -0.007 4.007 6 C 0.067 3.933 7 N -0.636 5.636 8 C 0.456 3.544 9 S -0.802 6.802 10 N -0.461 5.461 11 C -0.319 4.319 12 H 0.123 0.877 13 C 0.008 3.992 14 N -0.885 5.885 15 Si 1.011 2.989 16 H -0.266 1.266 17 H -0.263 1.263 18 H -0.264 1.264 19 C 0.148 3.852 20 O -0.330 6.330 21 C 0.018 3.982 22 C -0.243 4.243 23 H 0.066 0.934 24 H 0.125 0.875 25 H 0.056 0.944 26 H 0.147 0.853 27 H 0.131 0.869 28 H 0.406 0.594 29 H 0.400 0.600 30 H 0.294 0.706 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.443 -14.287 -6.183 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.240 6.240 3 C 0.111 3.889 4 C -0.260 4.260 5 C -0.030 4.030 6 C -0.028 4.028 7 N -0.268 5.268 8 C 0.092 3.908 9 S -0.673 6.673 10 N -0.063 5.063 11 C -0.453 4.453 12 H 0.141 0.859 13 C -0.200 4.200 14 N -0.519 5.519 15 Si 0.831 3.169 16 H -0.191 1.191 17 H -0.187 1.187 18 H -0.188 1.188 19 C 0.099 3.901 20 O -0.244 6.244 21 C -0.076 4.076 22 C -0.263 4.263 23 H 0.084 0.916 24 H 0.143 0.857 25 H 0.075 0.925 26 H 0.164 0.836 27 H 0.148 0.852 28 H 0.244 0.756 29 H 0.237 0.763 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.942 -14.146 -5.441 15.185 hybrid contribution 1.070 0.998 -0.498 1.545 sum 0.128 -13.148 -5.939 14.428 Atomic orbital electron populations 1.23354 0.76443 1.05598 1.02219 1.86008 1.23429 1.26095 1.88433 1.18694 0.91622 0.84422 0.94148 1.21094 1.00944 0.90809 1.13128 1.21067 0.92451 0.98667 0.90844 1.16757 0.91228 0.81609 1.13189 1.41087 1.38442 1.10389 1.36911 1.20736 0.93767 0.84111 0.92156 1.92329 1.28848 1.89612 1.56507 1.40965 1.24019 1.10267 1.31050 1.20707 1.15475 0.93109 1.16056 0.85897 1.26509 0.94471 1.00100 0.98872 1.69682 1.17707 1.27796 1.36697 0.84709 0.78839 0.75789 0.77546 1.19087 1.18671 1.18839 1.18550 0.82864 0.91988 0.96674 1.86075 1.14640 1.35095 1.88596 1.23372 0.97253 0.84410 1.02517 1.20206 0.92844 0.96724 1.16512 0.91573 0.85667 0.92497 0.83580 0.85159 0.75596 0.76295 0.89595 0.86379 0.92034 0.90866 0.82434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.12 10.50 -93.19 -0.98 -9.10 16 3 C 0.16 4.65 6.68 22.49 0.15 4.80 16 4 C -0.24 -7.62 9.03 22.37 0.20 -7.42 16 5 C -0.01 -0.26 7.88 22.37 0.18 -0.08 16 6 C 0.07 2.61 5.90 38.16 0.23 2.83 16 7 N -0.64 -25.93 5.08 -189.50 -0.96 -26.89 16 8 C 0.46 22.28 7.81 179.05 1.40 23.68 16 9 S -0.80 -44.19 24.38 -56.49 -1.38 -45.57 16 10 N -0.46 -22.75 5.29 -193.56 -1.02 -23.78 16 11 C -0.32 -16.85 9.50 84.03 0.80 -16.05 16 12 H 0.12 7.01 6.22 -2.91 -0.02 7.00 16 13 C 0.01 0.38 5.50 84.90 0.47 0.85 16 14 N -0.89 -42.88 13.05 21.66 0.28 -42.59 16 15 Si 1.01 39.31 29.55 68.60 2.03 41.34 16 16 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 18 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 19 C 0.15 4.94 6.70 22.59 0.15 5.09 16 20 O -0.33 -9.99 10.24 -93.28 -0.95 -10.94 16 21 C 0.02 0.36 9.81 113.37 1.11 1.47 16 22 C -0.24 -7.07 8.97 22.44 0.20 -6.86 16 23 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 26 H 0.15 3.92 6.28 -2.91 -0.02 3.90 16 27 H 0.13 5.71 6.30 -4.79 -0.03 5.68 16 28 H 0.41 14.35 8.84 -92.71 -0.82 13.53 16 29 H 0.40 18.51 7.91 -92.71 -0.73 17.78 16 30 H 0.29 13.13 8.31 -92.70 -0.77 12.36 16 31 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 33 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 34 H 0.16 3.66 6.30 -2.91 -0.02 3.64 16 Total: -1.00 -67.31 304.09 2.61 -64.70 By element: Atomic # 1 Polarization: 43.51 SS G_CDS: -0.40 Total: 43.11 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.99 Total: 9.72 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -1.70 Total: -93.26 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -1.93 Total: -20.04 kcal Atomic # 14 Polarization: 39.31 SS G_CDS: 2.03 Total: 41.34 kcal Atomic # 16 Polarization: -44.19 SS G_CDS: -1.38 Total: -45.57 kcal Total: -67.31 2.61 -64.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200978971.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.912 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds