Wall clock time and date at job start Tue Mar 31 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36071 * 117.00273 * 2 1 4 4 C 1.38560 * 120.00031 * 359.72676 * 3 2 1 5 5 C 1.38184 * 120.06914 * 179.69555 * 4 3 2 6 6 C 1.38857 * 120.07213 * 0.60249 * 5 4 3 7 7 N 1.40042 * 119.99847 * 179.69972 * 6 5 4 8 8 C 1.34773 * 120.00312 * 314.49397 * 7 6 5 9 9 S 1.71201 * 119.99726 * 4.22853 * 8 7 6 10 10 N 1.34773 * 120.00175 * 184.23284 * 8 7 6 11 11 C 1.37054 * 119.99864 * 179.97438 * 10 8 7 12 12 H 1.08001 * 120.00019 * 0.02562 * 11 10 8 13 13 C 1.38879 * 119.99825 * 179.97438 * 11 10 8 14 14 N 1.31478 * 120.00231 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99898 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47285 * 90.00350 * 15 13 11 17 17 H 1.48506 * 109.47136 * 210.00539 * 15 13 11 18 18 H 1.48502 * 109.47159 * 330.00266 * 15 13 11 19 19 C 1.38831 * 120.00578 * 359.67687 * 6 5 4 20 20 C 1.38501 * 119.92576 * 0.02562 * 19 6 5 21 21 O 1.35989 * 120.03664 * 179.97438 * 20 19 6 22 22 C 1.42895 * 116.99826 * 0.02609 * 21 20 19 23 23 H 1.08999 * 109.47062 * 300.00316 * 1 2 3 24 24 H 1.09006 * 109.47140 * 59.99766 * 1 2 3 25 25 H 1.08997 * 109.47405 * 179.97438 * 1 2 3 26 26 H 1.07997 * 119.96309 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.96243 * 180.30141 * 5 4 3 28 28 H 0.97003 * 120.00150 * 134.49941 * 7 6 5 29 29 H 0.96998 * 120.00183 * 359.97438 * 10 8 7 30 30 H 0.96998 * 120.00451 * 179.97438 * 14 13 11 31 31 H 1.08001 * 120.04013 * 180.02562 * 19 6 5 32 32 H 1.09002 * 109.47424 * 299.99530 * 22 21 20 33 33 H 1.08998 * 109.47348 * 59.99798 * 22 21 20 34 34 H 1.09005 * 109.46912 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2124 0.0000 4 6 1.2922 2.3745 -0.0057 5 6 1.9181 3.6064 0.0006 6 6 3.3046 3.6825 0.0001 7 7 3.9372 4.9318 0.0002 8 6 3.5117 5.9028 -0.8319 9 16 2.1308 5.6466 -1.8110 10 7 4.1731 7.0755 -0.8934 11 6 3.7406 8.0627 -1.7400 12 1 2.8695 7.9010 -2.3576 13 6 4.4219 9.2712 -1.8029 14 7 5.4821 9.4682 -1.0507 15 14 3.8320 10.6170 -2.9563 16 1 2.8598 11.4865 -2.2463 17 1 4.9916 11.4312 -3.4011 18 1 3.1756 10.0032 -4.1385 19 6 4.0637 2.5201 0.0000 20 6 3.4364 1.2852 -0.0001 21 8 4.1778 0.1452 -0.0008 22 6 5.5988 0.2955 -0.0007 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 0.2137 2.3173 -0.0106 27 1 1.3282 4.5111 0.0011 28 1 4.6819 5.0984 0.5991 29 1 4.9553 7.2208 -0.3384 30 1 5.9582 10.3121 -1.0949 31 1 5.1421 2.5786 0.0000 32 1 5.9061 0.8451 -0.8904 33 1 5.9061 0.8442 0.8895 34 1 6.0682 -0.6883 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201064489.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:38 Heat of formation + Delta-G solvation = -27.639581 kcal Electronic energy + Delta-G solvation = -19340.670432 eV Core-core repulsion = 16172.891363 eV Total energy + Delta-G solvation = -3167.779070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.28205 -38.38995 -38.14619 -36.56126 -34.23312 -32.12681 -30.00428 -29.11626 -27.09300 -26.71289 -25.40032 -23.05931 -21.76055 -21.40314 -19.10975 -18.27047 -17.68294 -17.02964 -16.14824 -15.81236 -15.61841 -15.11764 -15.04747 -14.56225 -14.24743 -14.08220 -13.91759 -13.54715 -12.70955 -12.39904 -12.30644 -12.01220 -11.96188 -11.40979 -11.25633 -11.00061 -10.96194 -10.95271 -10.69796 -10.59104 -9.96282 -9.83270 -8.87280 -8.26748 -7.36810 -7.13648 -6.68918 -5.83603 -4.40390 1.59726 1.88176 2.52195 3.00029 3.04315 3.12464 3.28650 3.50663 3.54481 3.73861 3.97964 4.18987 4.68756 4.91789 5.07770 5.16602 5.24245 5.25734 5.31927 5.50664 5.55265 5.63076 5.69976 5.75802 5.89938 6.19909 6.75851 6.79570 6.97613 7.02379 7.16485 7.29788 7.47192 7.86456 7.98608 8.21364 8.70400 8.85544 9.99351 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028857 B = 0.004073 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.070487 B = 6872.953492 C = 7599.543309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.083 3.917 4 C -0.168 4.168 5 C -0.063 4.063 6 C 0.171 3.829 7 N -0.662 5.662 8 C 0.433 3.567 9 S -0.739 6.739 10 N -0.457 5.457 11 C -0.284 4.284 12 H 0.148 0.852 13 C 0.035 3.965 14 N -0.866 5.866 15 Si 0.952 3.048 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.256 1.256 19 C -0.192 4.192 20 C 0.093 3.907 21 O -0.310 6.310 22 C 0.029 3.971 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.132 0.868 27 H 0.156 0.844 28 H 0.392 0.608 29 H 0.394 0.606 30 H 0.287 0.713 31 H 0.129 0.871 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -11.269 5.426 12.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.227 6.227 3 C 0.038 3.962 4 C -0.190 4.190 5 C -0.087 4.087 6 C 0.075 3.925 7 N -0.294 5.294 8 C 0.073 3.927 9 S -0.608 6.608 10 N -0.057 5.057 11 C -0.419 4.419 12 H 0.165 0.835 13 C -0.175 4.175 14 N -0.500 5.500 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.180 1.180 19 C -0.215 4.215 20 C 0.047 3.953 21 O -0.224 6.224 22 C -0.067 4.067 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.150 0.850 27 H 0.173 0.827 28 H 0.228 0.772 29 H 0.230 0.770 30 H 0.097 0.903 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.955 -11.410 4.654 12.360 hybrid contribution 1.546 1.364 0.550 2.133 sum 0.591 -10.046 5.204 11.329 Atomic orbital electron populations 1.22977 0.79249 1.03177 1.01277 1.86109 1.20472 1.26430 1.89698 1.18158 0.88872 0.84941 1.04274 1.20842 0.99588 0.90878 1.07661 1.21460 0.93540 0.98487 0.95179 1.16880 0.91405 0.82697 1.01476 1.41415 1.36571 1.10608 1.40756 1.20929 0.95226 0.83373 0.93189 1.92368 1.23416 1.89021 1.55976 1.41086 1.22769 1.09609 1.32214 1.20912 1.13414 0.90591 1.16981 0.83489 1.25813 0.94809 0.99356 0.97536 1.69659 1.16664 1.27113 1.36520 0.85478 0.78509 0.78569 0.79901 1.19340 1.20307 1.17985 1.20705 0.99630 0.90391 1.10732 1.17683 0.87940 0.85122 1.04577 1.86122 1.18102 1.28387 1.89791 1.22968 0.79443 1.03182 1.01083 0.92972 0.92769 0.88873 0.85018 0.82651 0.77239 0.77002 0.90309 0.85323 0.92921 0.93122 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.86 10.28 -34.57 -0.36 -5.21 16 3 C 0.08 1.40 6.70 -39.12 -0.26 1.13 16 4 C -0.17 -2.79 9.03 -39.48 -0.36 -3.15 16 5 C -0.06 -1.18 7.86 -39.37 -0.31 -1.49 16 6 C 0.17 3.16 5.93 -83.66 -0.50 2.66 16 7 N -0.66 -12.34 5.32 -11.38 -0.06 -12.41 16 8 C 0.43 9.89 7.81 -86.92 -0.68 9.21 16 9 S -0.74 -19.25 24.22 -107.50 -2.60 -21.85 16 10 N -0.46 -10.54 5.29 -12.53 -0.07 -10.60 16 11 C -0.28 -7.09 9.51 -14.98 -0.14 -7.23 16 12 H 0.15 3.94 6.22 -52.49 -0.33 3.61 16 13 C 0.03 0.81 5.50 -17.47 -0.10 0.72 16 14 N -0.87 -20.47 13.05 55.49 0.72 -19.74 16 15 Si 0.95 18.75 29.55 -169.99 -5.02 13.73 16 16 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 19 C -0.19 -3.14 8.95 -39.26 -0.35 -3.49 16 20 C 0.09 1.56 6.70 -39.14 -0.26 1.30 16 21 O -0.31 -4.80 10.28 -34.31 -0.35 -5.16 16 22 C 0.03 0.31 9.81 101.05 0.99 1.31 16 23 H 0.05 0.50 7.67 -51.93 -0.40 0.10 16 24 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.13 1.86 6.29 -52.49 -0.33 1.53 16 27 H 0.16 3.26 6.11 -44.60 -0.27 2.99 16 28 H 0.39 6.01 8.84 -40.82 -0.36 5.65 16 29 H 0.39 8.48 7.91 -40.82 -0.32 8.16 16 30 H 0.29 6.33 8.31 -40.82 -0.34 5.99 16 31 H 0.13 1.80 6.29 -52.49 -0.33 1.47 16 32 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 33 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 303.83 15.07 4.58 4.58 Total: -1.00 -30.60 303.83 -7.65 -38.24 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -3.51 Total: 16.16 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.97 Total: 2.26 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.60 Total: -42.75 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: -0.71 Total: -10.37 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Atomic # 16 Polarization: -19.25 SS G_CDS: -2.60 Total: -21.85 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.60 -7.65 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201064489.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.603 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds