Wall clock time and date at job start Tue Mar 31 2020 06:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00180 * 2 1 4 4 H 1.48492 * 109.47081 * 269.99782 * 3 2 1 5 5 H 1.48497 * 109.47003 * 30.00077 * 3 2 1 6 6 H 1.48502 * 109.47077 * 149.99832 * 3 2 1 7 7 C 1.37883 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00492 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99722 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.47960 * 111.00163 * 169.99954 * 10 9 7 12 12 C 1.53934 * 86.18058 * 222.41402 * 11 10 9 13 13 O 1.42905 * 113.73169 * 138.07945 * 12 11 10 14 14 C 1.35670 * 117.00078 * 151.90002 * 13 12 11 15 15 C 1.38919 * 119.68760 * 179.97438 * 14 13 12 16 16 C 1.38376 * 119.11514 * 179.97438 * 15 14 13 17 17 C 1.38830 * 118.48608 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.35718 * 180.02562 * 17 16 15 19 19 Cl 1.80299 * 109.46953 * 89.99932 * 18 17 16 20 20 C 1.38053 * 119.28654 * 0.02562 * 17 16 15 21 21 N 1.31959 * 120.83575 * 359.73977 * 20 17 16 22 22 C 1.48186 * 111.07427 * 70.56351 * 10 9 7 23 23 H 0.96993 * 119.99940 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47240 * 59.99989 * 9 7 2 25 25 H 1.08996 * 109.46984 * 299.99722 * 9 7 2 26 26 H 1.09001 * 113.75866 * 108.09297 * 11 10 9 27 27 H 1.09001 * 113.75942 * 336.73414 * 11 10 9 28 28 H 1.08998 * 113.73400 * 269.25164 * 12 11 10 29 29 H 1.07997 * 120.43978 * 359.95496 * 15 14 13 30 30 H 1.08000 * 120.76180 * 180.02562 * 16 15 14 31 31 H 1.08998 * 109.46835 * 210.00081 * 18 17 16 32 32 H 1.08993 * 109.47033 * 329.99896 * 18 17 16 33 33 H 1.07993 * 119.58001 * 180.02562 * 20 17 16 34 34 H 1.09000 * 113.75847 * 23.23813 * 22 10 9 35 35 H 1.08998 * 113.82742 * 251.81086 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0012 -2.5791 0.0010 11 6 5.4606 -2.6256 -0.2383 12 6 5.1657 -3.8136 -1.1717 13 8 5.9127 -3.7872 -2.3897 14 6 6.1825 -4.9822 -2.9728 15 6 6.9046 -5.0215 -4.1589 16 6 7.1736 -6.2468 -4.7430 17 6 6.7080 -7.3952 -4.1172 18 6 6.9773 -8.7516 -4.7162 19 17 8.5318 -9.3963 -4.0692 20 6 5.9956 -7.2813 -2.9401 21 7 5.7587 -6.0987 -2.4046 22 6 3.7455 -3.2345 -1.3032 23 1 -0.4850 0.8400 -0.0004 24 1 3.8746 -0.6801 0.8911 25 1 3.8752 -0.6805 -0.8888 26 1 6.0419 -2.8938 0.6438 27 1 5.8492 -1.7476 -0.7543 28 1 5.2002 -4.7823 -0.6732 29 1 7.2511 -4.1080 -4.6191 30 1 7.7330 -6.3084 -5.6648 31 1 6.1657 -9.4312 -4.4562 32 1 7.0438 -8.6631 -5.8005 33 1 5.6315 -8.1715 -2.4490 34 1 3.6313 -2.5350 -2.1313 35 1 2.9591 -3.9885 -1.2704 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206674633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:45 Heat of formation + Delta-G solvation = 28.010421 kcal Electronic energy + Delta-G solvation = -18941.223366 eV Core-core repulsion = 15773.813755 eV Total energy + Delta-G solvation = -3167.409611 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88761 -39.42626 -37.22875 -36.24844 -33.19834 -32.81398 -31.87461 -29.74164 -26.94048 -25.84566 -25.37690 -23.94138 -22.37556 -21.19308 -19.49986 -18.59991 -17.10443 -16.87323 -15.88503 -15.67405 -15.20751 -15.14408 -14.75787 -14.40429 -14.11431 -13.87921 -13.52198 -13.45184 -12.71910 -12.57218 -12.45418 -12.20535 -12.09167 -11.89729 -11.00521 -10.94341 -10.79842 -10.76156 -10.25960 -10.13620 -9.93961 -9.81688 -9.70593 -9.31688 -8.64304 -8.56195 -8.07486 -6.09514 -4.08156 0.72387 0.98429 2.11108 3.00797 3.25445 3.33344 3.35317 3.58207 4.04662 4.21872 4.34124 4.38170 4.56317 4.61263 4.79085 4.85675 4.97986 5.03685 5.22465 5.37908 5.48004 5.57887 5.68211 5.87731 5.88753 5.98199 6.12847 6.28861 6.35942 6.45087 6.74296 7.21939 7.28580 7.67386 7.69038 7.74029 8.54914 8.98070 9.51173 11.03612 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.045864 B = 0.002854 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.360479 B = 9809.858192 C = 9902.688219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.069 3.931 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.080 0.920 9 C 0.132 3.868 10 N -0.461 5.461 11 C -0.001 4.001 12 C 0.051 3.949 13 O -0.294 6.294 14 C 0.342 3.658 15 C -0.196 4.196 16 C -0.020 4.020 17 C -0.214 4.214 18 C 0.024 3.976 19 Cl -0.183 7.183 20 C 0.168 3.832 21 N -0.537 5.537 22 C 0.014 3.986 23 H 0.264 0.736 24 H 0.034 0.966 25 H -0.007 1.007 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.121 0.879 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.076 0.924 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.597 -16.131 -11.358 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.098 0.902 9 C 0.005 3.995 10 N -0.185 5.185 11 C -0.130 4.130 12 C -0.006 4.006 13 O -0.199 6.199 14 C 0.163 3.837 15 C -0.217 4.217 16 C -0.046 4.046 17 C -0.217 4.217 18 C -0.040 4.040 19 Cl -0.157 7.157 20 C 0.011 3.989 21 N -0.259 5.259 22 C -0.115 4.115 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.011 0.989 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.139 0.861 29 H 0.162 0.838 30 H 0.159 0.841 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.177 0.823 34 H 0.094 0.906 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.857 -15.936 -9.981 24.597 hybrid contribution 1.002 1.319 -1.318 2.117 sum 16.859 -14.617 -11.300 25.011 Atomic orbital electron populations 1.69890 1.06145 1.26947 1.50701 1.24913 0.94772 0.98924 0.94648 0.86840 0.80395 0.83898 0.78535 1.20260 1.21011 1.19099 1.20950 0.88447 0.94903 1.50889 0.90224 1.20686 0.97793 0.85273 0.95776 1.68536 1.02738 1.18893 1.28372 1.24291 0.94594 0.96563 0.97525 1.24948 0.91824 1.01260 0.82550 1.86393 1.69281 1.24646 1.39588 1.20017 0.89064 0.85301 0.89313 1.21101 1.04532 0.99724 0.96368 1.21244 0.94256 0.90713 0.98339 1.20484 1.06288 0.95033 0.99895 1.22946 0.87481 0.93337 1.00187 1.98746 1.39395 1.88293 1.89236 1.22330 0.91572 0.94330 0.90671 1.67374 1.24949 0.98548 1.35079 1.24228 0.94983 0.98787 0.93474 0.92569 0.94793 0.98880 0.89144 0.91005 0.86092 0.83828 0.84131 0.87803 0.88010 0.82321 0.90595 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.51 -14.81 9.40 -34.43 -0.32 -15.13 16 8 H 0.08 2.50 8.04 -52.49 -0.42 2.08 16 9 C 0.13 3.24 3.65 -4.97 -0.02 3.23 16 10 N -0.46 -9.90 6.25 -239.76 -1.50 -11.40 16 11 C 0.00 -0.01 7.81 -2.76 -0.02 -0.03 16 12 C 0.05 0.84 4.33 -25.80 -0.11 0.73 16 13 O -0.29 -4.61 10.14 -18.71 -0.19 -4.80 16 14 C 0.34 4.69 7.49 -17.12 -0.13 4.56 16 15 C -0.20 -2.10 10.04 -39.28 -0.39 -2.50 16 16 C -0.02 -0.17 9.85 -39.31 -0.39 -0.55 16 17 C -0.21 -1.76 5.28 -104.47 -0.55 -2.31 16 18 C 0.02 0.13 6.81 36.01 0.25 0.38 16 19 Cl -0.18 -1.46 29.13 -51.86 -1.51 -2.97 16 20 C 0.17 1.69 10.85 -17.56 -0.19 1.50 16 21 N -0.54 -7.16 8.61 -13.33 -0.11 -7.28 16 22 C 0.01 0.28 7.32 -2.63 -0.02 0.26 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 24 H 0.03 0.85 7.20 -51.93 -0.37 0.47 16 25 H -0.01 -0.16 7.12 -51.93 -0.37 -0.53 16 26 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 28 H 0.12 1.96 6.92 -51.93 -0.36 1.60 16 29 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 31 H 0.10 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.10 0.39 8.09 -51.93 -0.42 -0.03 16 33 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.08 1.55 7.79 -51.93 -0.40 1.15 16 35 H 0.09 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 314.42 15.07 4.74 4.74 Total: -1.00 -32.33 314.42 -8.93 -41.26 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.46 Total: -1.60 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -2.00 Total: -7.95 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -0.84 Total: -45.56 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.19 Total: -4.80 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -1.51 Total: -2.97 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.33 -8.93 -41.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206674633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.269 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds