Wall clock time and date at job start Tue Mar 31 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00262 * 2 1 4 4 H 1.48503 * 109.47030 * 240.00319 * 3 2 1 5 5 H 1.48498 * 109.47107 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47269 * 120.00103 * 3 2 1 7 7 C 1.37876 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00212 * 359.97438 * 7 2 1 10 10 N 1.46890 * 109.47212 * 180.02562 * 9 7 2 11 11 C 1.47961 * 111.00255 * 170.00073 * 10 9 7 12 12 C 1.53935 * 86.18332 * 222.41465 * 11 10 9 13 13 O 1.42900 * 113.73310 * 138.07365 * 12 11 10 14 14 C 1.35914 * 116.99691 * 157.66835 * 13 12 11 15 15 C 1.38746 * 120.47218 * 185.56034 * 14 13 12 16 16 N 1.31815 * 120.67986 * 179.68079 * 15 14 13 17 17 C 1.31879 * 121.78117 * 0.63485 * 16 15 14 18 18 C 1.38213 * 120.88598 * 359.65433 * 17 16 15 19 19 C 1.50700 * 120.38545 * 179.97438 * 18 17 16 20 20 Cl 1.80296 * 109.47079 * 270.02173 * 19 18 17 21 21 C 1.38573 * 119.22264 * 0.02562 * 18 17 16 22 22 C 1.47958 * 111.00469 * 70.63763 * 10 9 7 23 23 H 0.97008 * 119.99783 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.46888 * 59.99765 * 9 7 2 25 25 H 1.09000 * 109.46934 * 299.99737 * 9 7 2 26 26 H 1.09006 * 113.76153 * 108.09352 * 11 10 9 27 27 H 1.09000 * 113.75375 * 336.73160 * 11 10 9 28 28 H 1.08997 * 113.73547 * 269.25303 * 12 11 10 29 29 H 1.08000 * 119.66247 * 359.97438 * 15 14 13 30 30 H 1.08002 * 119.55747 * 179.67854 * 17 16 15 31 31 H 1.08993 * 109.47202 * 30.02439 * 19 18 17 32 32 H 1.09003 * 109.46929 * 150.02294 * 19 18 17 33 33 H 1.08002 * 120.81532 * 180.02562 * 21 18 17 34 34 H 1.08998 * 113.75831 * 23.26410 * 22 10 9 35 35 H 1.08997 * 113.76438 * 251.90041 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6157 -0.0005 11 6 1.5161 -4.9027 0.2393 12 6 2.6927 -5.2413 1.1724 13 8 2.2968 -5.8746 2.3907 14 6 3.2385 -6.6108 3.0376 15 6 2.9032 -7.3494 4.1632 16 7 3.8118 -8.0699 4.7901 17 6 5.0667 -8.1093 4.3865 18 6 5.4778 -7.3955 3.2767 19 6 6.9148 -7.4483 2.8257 20 17 7.8479 -6.1363 3.6373 21 6 4.5534 -6.6300 2.5841 22 6 2.8982 -3.7212 1.3026 23 1 -0.4850 0.8401 0.0004 24 1 0.6239 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 1.4574 -5.5406 -0.6427 27 1 0.5617 -4.8001 0.7556 28 1 3.5142 -5.7555 0.6737 29 1 1.8863 -7.3378 4.5268 30 1 5.7827 -8.7077 4.9303 31 1 7.3430 -8.4153 3.0894 32 1 6.9617 -7.3126 1.7452 33 1 4.8464 -6.0624 1.7133 34 1 2.3480 -3.2730 2.1299 35 1 3.9438 -3.4151 1.2703 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223080917.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:42 Heat of formation + Delta-G solvation = 23.323428 kcal Electronic energy + Delta-G solvation = -19157.697451 eV Core-core repulsion = 15990.084597 eV Total energy + Delta-G solvation = -3167.612854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93125 -39.48184 -37.24560 -36.33865 -33.55073 -32.93755 -30.89561 -29.25620 -27.44892 -25.90639 -25.37470 -23.75303 -22.38625 -21.47216 -19.55763 -18.21692 -17.09519 -16.93055 -16.43757 -15.60137 -15.18269 -14.91410 -14.67192 -14.37883 -14.19523 -13.84916 -13.61557 -13.50483 -12.82480 -12.61483 -12.22562 -12.09229 -11.99878 -11.48773 -10.99926 -10.96431 -10.76390 -10.72892 -10.42767 -10.36910 -9.87735 -9.80383 -9.71632 -9.26859 -8.56623 -8.49383 -7.99097 -6.11372 -4.14123 0.63126 1.07724 2.13131 3.05838 3.29216 3.33360 3.36247 3.60378 4.00540 4.33661 4.36044 4.44258 4.51800 4.57295 4.68418 4.70174 4.94061 5.01383 5.10415 5.24797 5.34061 5.63032 5.82153 5.83430 5.92065 5.97312 6.14758 6.25799 6.32775 6.48834 7.09317 7.25304 7.51798 7.74069 7.75853 7.98671 8.30081 8.92198 9.50822 10.99774 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.003787 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.512629 B = 7392.782379 C = 8341.700066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.062 0.938 9 C 0.163 3.837 10 N -0.472 5.472 11 C 0.009 3.991 12 C 0.039 3.961 13 O -0.295 6.295 14 C 0.094 3.906 15 C 0.076 3.924 16 N -0.447 5.447 17 C 0.070 3.930 18 C -0.120 4.120 19 C 0.011 3.989 20 Cl -0.170 7.170 21 C -0.148 4.148 22 C 0.009 3.991 23 H 0.263 0.737 24 H 0.036 0.964 25 H 0.002 0.998 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.918 -17.329 5.931 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.037 3.963 10 N -0.197 5.197 11 C -0.120 4.120 12 C -0.017 4.017 13 O -0.206 6.206 14 C 0.046 3.954 15 C -0.083 4.083 16 N -0.155 5.155 17 C -0.087 4.087 18 C -0.123 4.123 19 C -0.052 4.052 20 Cl -0.143 7.143 21 C -0.175 4.175 22 C -0.120 4.120 23 H 0.073 0.927 24 H 0.054 0.946 25 H 0.020 0.980 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.119 0.881 29 H 0.183 0.817 30 H 0.174 0.826 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.164 0.836 34 H 0.098 0.902 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.726 -17.417 6.152 21.360 hybrid contribution 0.294 1.607 -0.199 1.645 sum 11.020 -15.811 5.953 20.171 Atomic orbital electron populations 1.69941 1.06096 1.27112 1.50382 1.24980 0.94885 0.99416 0.95097 0.86533 0.79468 0.82552 0.78735 1.20075 1.21211 1.20191 1.21020 0.93398 0.89875 1.51061 0.92010 1.20225 0.90800 0.88312 0.96921 1.68611 1.21529 1.02074 1.27516 1.24173 0.96079 0.94855 0.96920 1.25077 0.99938 0.93658 0.83060 1.86271 1.36256 1.61021 1.37027 1.20227 0.88759 0.92425 0.94029 1.22325 1.00093 0.93967 0.91867 1.67749 1.01856 1.16977 1.28913 1.22484 0.93044 0.98914 0.94281 1.20548 0.95019 0.99123 0.97572 1.23078 0.89100 0.93181 0.99886 1.98758 1.76203 1.56282 1.83043 1.21699 0.92401 1.01159 1.02215 1.24239 1.01677 0.91664 0.94464 0.92696 0.94624 0.97994 0.89266 0.90546 0.88104 0.81733 0.82605 0.87495 0.87687 0.83648 0.90219 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.33 8.84 -34.44 -0.30 -14.64 16 8 H 0.06 1.70 7.80 -52.49 -0.41 1.29 16 9 C 0.16 4.17 4.58 -4.98 -0.02 4.15 16 10 N -0.47 -9.81 6.25 -239.96 -1.50 -11.31 16 11 C 0.01 0.15 7.81 -2.77 -0.02 0.12 16 12 C 0.04 0.58 3.87 -25.80 -0.10 0.48 16 13 O -0.29 -4.33 10.17 -19.47 -0.20 -4.53 16 14 C 0.09 1.21 6.70 -39.07 -0.26 0.95 16 15 C 0.08 0.94 11.14 -17.37 -0.19 0.74 16 16 N -0.45 -5.42 10.36 -13.12 -0.14 -5.56 16 17 C 0.07 0.71 10.85 -17.54 -0.19 0.52 16 18 C -0.12 -1.16 5.27 -104.51 -0.55 -1.71 16 19 C 0.01 0.08 6.81 36.01 0.25 0.32 16 20 Cl -0.17 -1.67 29.13 -51.86 -1.51 -3.18 16 21 C -0.15 -1.67 8.79 -39.14 -0.34 -2.01 16 22 C 0.01 0.16 7.29 -2.77 -0.02 0.14 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.00 0.06 7.69 -51.93 -0.40 -0.34 16 26 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.33 7.79 -51.93 -0.40 0.93 16 28 H 0.10 1.28 6.05 -51.93 -0.31 0.97 16 29 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.11 0.50 8.09 -51.93 -0.42 0.08 16 32 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.15 1.53 6.07 -52.49 -0.32 1.21 16 34 H 0.08 1.60 7.78 -51.93 -0.40 1.20 16 35 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 315.68 15.07 4.76 4.76 Total: -1.00 -30.78 315.68 -9.07 -39.85 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.34 Total: -1.48 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -1.86 Total: -9.39 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.90 Total: -42.50 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.20 Total: -4.53 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -1.67 SS G_CDS: -1.51 Total: -3.18 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.78 -9.07 -39.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223080917.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.175 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds