Wall clock time and date at job start Tue Mar 31 2020 06:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00424 * 2 1 4 4 H 1.48497 * 109.46817 * 270.00041 * 3 2 1 5 5 H 1.48498 * 109.47120 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47278 * 149.99969 * 3 2 1 7 7 C 1.38818 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99733 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.65055 * 359.96660 * 9 7 2 11 11 C 1.54908 * 104.82957 * 155.90945 * 10 9 7 12 12 C 1.55150 * 101.58214 * 37.01307 * 11 10 9 13 13 H 1.08994 * 110.72402 * 83.03808 * 12 11 10 14 14 O 1.42910 * 110.72082 * 206.13650 * 12 11 10 15 15 C 1.35911 * 116.99689 * 203.95436 * 14 12 11 16 16 C 1.38754 * 120.46791 * 174.51248 * 15 14 12 17 17 N 1.31815 * 120.67784 * 180.02562 * 16 15 14 18 18 C 1.31872 * 121.77982 * 359.72615 * 17 16 15 19 19 C 1.38209 * 120.89184 * 0.54398 * 18 17 16 20 20 C 1.50703 * 120.39116 * 179.75254 * 19 18 17 21 21 Cl 1.80306 * 109.47170 * 89.71593 * 20 19 18 22 22 C 1.38582 * 119.21795 * 359.46733 * 19 18 17 23 23 C 1.47321 * 125.61030 * 180.19410 * 9 7 2 24 24 H 0.97008 * 119.99657 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.36704 * 37.07559 * 10 9 7 26 26 H 1.08996 * 110.46125 * 274.79632 * 10 9 7 27 27 H 1.08998 * 111.00407 * 278.93462 * 11 10 9 28 28 H 1.08997 * 111.00474 * 155.08798 * 11 10 9 29 29 H 1.07996 * 119.65883 * 0.03813 * 16 15 14 30 30 H 1.08000 * 119.55631 * 180.26583 * 18 17 16 31 31 H 1.09002 * 109.46716 * 329.71236 * 20 19 18 32 32 H 1.09006 * 109.46737 * 209.71474 * 20 19 18 33 33 H 1.08002 * 120.80680 * 180.27627 * 22 19 18 34 34 H 1.09004 * 110.06451 * 61.67894 * 23 9 7 35 35 H 1.08994 * 109.85168 * 300.41896 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0007 11 6 -0.4018 -3.9325 -0.6106 12 6 0.7781 -4.7524 -0.0252 13 1 0.5444 -5.1002 0.9810 14 8 1.1001 -5.8539 -0.8769 15 6 1.7262 -6.9150 -0.3031 16 6 1.9705 -8.0680 -1.0353 17 7 2.5770 -9.0997 -0.4828 18 6 2.9778 -9.0787 0.7733 19 6 2.7649 -7.9679 1.5677 20 6 3.2227 -7.9583 3.0034 21 17 4.9101 -7.3290 3.0920 22 6 2.1308 -6.8608 1.0265 23 6 1.9336 -3.7299 0.0051 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5994 -1.7591 -0.6152 26 1 -0.5291 -2.4857 1.0184 27 1 -0.3522 -3.8988 -1.6989 28 1 -1.3592 -4.3327 -0.2770 29 1 1.6607 -8.1205 -2.0686 30 1 3.4751 -9.9429 1.1884 31 1 3.1917 -8.9726 3.4014 32 1 2.5646 -7.3174 3.5903 33 1 1.9554 -5.9775 1.6227 34 1 2.5274 -3.8682 0.9087 35 1 2.5621 -3.8544 -0.8766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223082913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:03 Heat of formation + Delta-G solvation = 14.908119 kcal Electronic energy + Delta-G solvation = -19593.429355 eV Core-core repulsion = 16425.451586 eV Total energy + Delta-G solvation = -3167.977769 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77355 -38.70056 -36.43933 -36.18726 -33.45837 -32.45327 -30.72196 -29.28232 -27.81834 -27.07294 -24.79035 -23.46899 -22.27125 -20.37142 -20.31231 -17.98065 -17.30085 -16.84029 -16.60612 -15.48726 -14.91429 -14.70642 -14.53402 -14.14974 -13.96478 -13.77128 -13.47960 -13.03867 -12.82900 -12.54545 -12.21206 -11.86438 -11.51852 -11.07585 -10.92303 -10.84814 -10.65773 -10.62045 -10.47190 -10.15765 -9.92959 -9.75493 -9.67861 -9.64997 -8.74741 -8.39185 -6.96506 -5.74990 -3.17498 0.72216 1.18155 2.21922 3.19806 3.36366 3.41596 3.43382 3.69888 4.10187 4.40852 4.44204 4.53141 4.66934 4.79778 5.01448 5.04466 5.16749 5.21845 5.41228 5.43329 5.48621 5.63039 5.92607 5.96105 6.08872 6.23902 6.33536 6.38513 6.47638 6.58177 7.33179 7.40249 7.52270 7.72684 7.82818 8.23684 9.11468 9.71389 10.33732 11.29486 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.004335 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.835193 B = 6457.914637 C = 7453.904422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.917 3.083 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.066 3.934 13 H 0.076 0.924 14 O -0.294 6.294 15 C 0.096 3.904 16 C 0.075 3.925 17 N -0.448 5.448 18 C 0.068 3.932 19 C -0.120 4.120 20 C 0.011 3.989 21 Cl -0.170 7.170 22 C -0.148 4.148 23 C 0.119 3.881 24 H 0.254 0.746 25 H 0.115 0.885 26 H 0.017 0.983 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.165 0.835 30 H 0.156 0.844 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.146 0.854 34 H 0.027 0.973 35 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.200 -16.901 4.223 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.204 4.204 3 Si 0.747 3.253 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.174 4.174 12 C 0.010 3.990 13 H 0.094 0.906 14 O -0.206 6.206 15 C 0.047 3.953 16 C -0.084 4.084 17 N -0.156 5.156 18 C -0.089 4.089 19 C -0.122 4.122 20 C -0.052 4.052 21 Cl -0.143 7.143 22 C -0.174 4.174 23 C -0.008 4.008 24 H 0.065 0.935 25 H 0.133 0.867 26 H 0.035 0.965 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.182 0.818 30 H 0.173 0.827 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.163 0.837 34 H 0.044 0.956 35 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.368 -17.317 3.539 17.833 hybrid contribution 0.452 1.693 0.860 1.952 sum 2.819 -15.623 4.400 16.474 Atomic orbital electron populations 1.69748 1.04943 1.25025 1.57430 1.24792 0.95758 0.97790 1.02066 0.86035 0.78543 0.83016 0.77690 1.21437 1.21539 1.20653 1.19089 0.90602 0.82162 1.43481 0.90332 1.44430 1.01794 0.99348 1.87163 1.22004 0.84841 0.91798 0.98579 1.23221 0.94675 0.97697 1.01786 1.23791 0.97854 0.84169 0.93174 0.90569 1.86216 1.71420 1.24788 1.38136 1.20244 0.93436 0.89502 0.92117 1.22284 0.98616 0.86814 1.00714 1.67731 1.08642 1.27132 1.12069 1.22448 0.99263 0.97546 0.89647 1.20548 0.99982 0.95283 0.96420 1.23080 0.84608 1.03157 0.94370 1.98756 1.27296 1.89521 1.98754 1.21757 1.00685 0.99760 0.95231 1.21743 0.93644 0.86471 0.98919 0.93545 0.86739 0.96526 0.90588 0.91406 0.81789 0.82670 0.87526 0.87711 0.83652 0.95565 0.94503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.24 10.09 55.49 0.56 -25.68 16 2 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 3 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.23 -6.21 10.28 -15.06 -0.15 -6.37 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.12 3.40 -169.84 -0.58 -15.70 16 10 C 0.15 3.56 5.89 -2.53 -0.01 3.55 16 11 C -0.14 -2.49 6.81 -24.59 -0.17 -2.66 16 12 C 0.07 1.15 2.75 -24.90 -0.07 1.08 16 13 H 0.08 1.19 6.29 -51.93 -0.33 0.86 16 14 O -0.29 -4.79 9.88 -19.46 -0.19 -4.98 16 15 C 0.10 1.37 6.69 -39.08 -0.26 1.11 16 16 C 0.07 0.98 11.14 -17.37 -0.19 0.79 16 17 N -0.45 -5.80 10.36 -13.13 -0.14 -5.93 16 18 C 0.07 0.76 10.86 -17.54 -0.19 0.57 16 19 C -0.12 -1.31 5.27 -104.50 -0.55 -1.86 16 20 C 0.01 0.09 6.81 36.01 0.25 0.34 16 21 Cl -0.17 -1.88 29.13 -51.86 -1.51 -3.39 16 22 C -0.15 -1.92 8.69 -39.14 -0.34 -2.26 16 23 C 0.12 2.47 6.85 -2.90 -0.02 2.45 16 24 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.12 3.01 5.88 -51.93 -0.31 2.71 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.11 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.10 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.15 1.89 5.80 -52.49 -0.30 1.58 16 34 H 0.03 0.54 7.84 -51.93 -0.41 0.13 16 35 H 0.04 0.80 8.06 -51.93 -0.42 0.38 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -30.11 307.96 -8.31 -38.42 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.26 Total: -0.54 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.81 Total: -3.60 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.15 Total: -47.31 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.19 Total: -4.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -1.51 Total: -3.39 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.11 -8.31 -38.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223082913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.333 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds