Wall clock time and date at job start Tue Mar 31 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00424 * 2 1 4 4 H 1.48497 * 109.46817 * 270.00041 * 3 2 1 5 5 H 1.48498 * 109.47120 * 29.99803 * 3 2 1 6 6 H 1.48500 * 109.47278 * 149.99969 * 3 2 1 7 7 C 1.38818 * 119.99757 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99733 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.47419 * 125.65055 * 359.96660 * 9 7 2 11 11 C 1.54908 * 104.82957 * 155.90945 * 10 9 7 12 12 C 1.55150 * 101.58214 * 37.01307 * 11 10 9 13 13 H 1.08994 * 110.72402 * 83.03808 * 12 11 10 14 14 O 1.42910 * 110.72082 * 206.13650 * 12 11 10 15 15 C 1.35911 * 116.99689 * 203.95436 * 14 12 11 16 16 C 1.38754 * 120.46791 * 174.51248 * 15 14 12 17 17 N 1.31815 * 120.67784 * 180.02562 * 16 15 14 18 18 C 1.31872 * 121.77982 * 359.72615 * 17 16 15 19 19 C 1.38209 * 120.89184 * 0.54398 * 18 17 16 20 20 C 1.50703 * 120.39116 * 179.75254 * 19 18 17 21 21 Cl 1.80306 * 109.47170 * 89.71593 * 20 19 18 22 22 C 1.38582 * 119.21795 * 359.46733 * 19 18 17 23 23 C 1.47321 * 125.61030 * 180.19410 * 9 7 2 24 24 H 0.97008 * 119.99657 * 0.02562 * 1 2 3 25 25 H 1.09001 * 110.36704 * 37.07559 * 10 9 7 26 26 H 1.08996 * 110.46125 * 274.79632 * 10 9 7 27 27 H 1.08998 * 111.00407 * 278.93462 * 11 10 9 28 28 H 1.08997 * 111.00474 * 155.08798 * 11 10 9 29 29 H 1.07996 * 119.65883 * 0.03813 * 16 15 14 30 30 H 1.08000 * 119.55631 * 180.26583 * 18 17 16 31 31 H 1.09002 * 109.46716 * 329.71236 * 20 19 18 32 32 H 1.09006 * 109.46737 * 209.71474 * 20 19 18 33 33 H 1.08002 * 120.80680 * 180.27627 * 22 19 18 34 34 H 1.09004 * 110.06451 * 61.67894 * 23 9 7 35 35 H 1.08994 * 109.85168 * 300.41896 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 -0.1416 -2.5331 0.0007 11 6 -0.4018 -3.9325 -0.6106 12 6 0.7781 -4.7524 -0.0252 13 1 0.5444 -5.1002 0.9810 14 8 1.1001 -5.8539 -0.8769 15 6 1.7262 -6.9150 -0.3031 16 6 1.9705 -8.0680 -1.0353 17 7 2.5770 -9.0997 -0.4828 18 6 2.9778 -9.0787 0.7733 19 6 2.7649 -7.9679 1.5677 20 6 3.2227 -7.9583 3.0034 21 17 4.9101 -7.3290 3.0920 22 6 2.1308 -6.8608 1.0265 23 6 1.9336 -3.7299 0.0051 24 1 -0.4850 0.8401 -0.0004 25 1 -0.5994 -1.7591 -0.6152 26 1 -0.5291 -2.4857 1.0184 27 1 -0.3522 -3.8988 -1.6989 28 1 -1.3592 -4.3327 -0.2770 29 1 1.6607 -8.1205 -2.0686 30 1 3.4751 -9.9429 1.1884 31 1 3.1917 -8.9726 3.4014 32 1 2.5646 -7.3174 3.5903 33 1 1.9554 -5.9775 1.6227 34 1 2.5274 -3.8682 0.9087 35 1 2.5621 -3.8544 -0.8766 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223082913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:02 Heat of formation + Delta-G solvation = -2.845902 kcal Electronic energy + Delta-G solvation = -19594.199227 eV Core-core repulsion = 16425.451586 eV Total energy + Delta-G solvation = -3168.747642 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.82458 -39.96974 -37.96285 -37.03666 -34.43377 -34.26486 -31.91753 -30.97943 -29.30447 -28.04240 -26.61931 -24.63437 -23.26951 -22.11859 -21.77989 -19.13181 -19.07685 -17.89171 -17.75458 -16.90773 -16.65785 -15.88725 -15.79277 -15.32255 -15.06440 -14.86195 -14.48934 -14.35974 -14.28055 -13.91865 -13.66923 -13.35834 -12.98657 -12.94671 -12.66801 -12.29699 -12.06060 -11.93631 -11.80178 -11.71820 -11.45759 -11.38949 -10.79457 -10.68147 -10.61892 -9.45088 -8.97290 -7.82839 -5.28106 -0.19145 0.19199 1.46417 1.47772 1.47943 1.56467 1.97845 2.47222 2.76208 3.24792 3.28472 3.52942 3.59632 3.66505 3.70920 3.77592 3.86174 3.92386 4.02694 4.30034 4.43572 4.52007 4.56864 4.67479 4.81327 4.87504 4.93499 5.01322 5.03446 5.40102 5.42086 5.54227 5.72592 6.20481 6.26356 6.87217 7.05134 7.69656 8.31810 9.19235 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019674 B = 0.004335 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.835193 B = 6457.914637 C = 7453.904422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.980 3.020 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.622 5.622 10 C 0.154 3.846 11 C -0.122 4.122 12 C 0.086 3.914 13 H 0.098 0.902 14 O -0.303 6.303 15 C 0.071 3.929 16 C 0.071 3.929 17 N -0.463 5.463 18 C 0.074 3.926 19 C -0.116 4.116 20 C 0.016 3.984 21 Cl -0.193 7.193 22 C -0.152 4.152 23 C 0.117 3.883 24 H 0.250 0.750 25 H 0.082 0.918 26 H 0.002 0.998 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.175 0.825 30 H 0.187 0.813 31 H 0.141 0.859 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.032 0.968 35 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 -18.658 5.103 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.808 3.192 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.350 5.350 10 C 0.029 3.971 11 C -0.160 4.160 12 C 0.029 3.971 13 H 0.116 0.884 14 O -0.215 6.215 15 C 0.023 3.977 16 C -0.087 4.087 17 N -0.171 5.171 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.047 4.047 21 Cl -0.167 7.167 22 C -0.179 4.179 23 C -0.008 4.008 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.020 0.980 27 H 0.089 0.911 28 H 0.118 0.882 29 H 0.192 0.808 30 H 0.204 0.796 31 H 0.159 0.841 32 H 0.135 0.865 33 H 0.161 0.839 34 H 0.050 0.950 35 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.890 -19.110 4.413 19.825 hybrid contribution 0.338 2.114 0.610 2.226 sum 3.227 -16.996 5.023 18.014 Atomic orbital electron populations 1.69987 1.06089 1.25338 1.58080 1.25595 0.96665 1.00807 1.02146 0.85057 0.77589 0.78971 0.77566 1.21179 1.21604 1.19716 1.19408 0.90954 0.83610 1.43420 0.90465 1.44702 1.02786 1.00333 1.87142 1.21785 0.83918 0.93944 0.97408 1.23021 0.96793 0.95011 1.01210 1.23445 0.95447 0.83901 0.94317 0.88419 1.86173 1.72322 1.24943 1.38083 1.20409 0.94925 0.89353 0.93023 1.22481 0.98401 0.86522 1.01277 1.67809 1.09166 1.27013 1.13114 1.23027 0.97854 0.98434 0.88976 1.20765 0.98996 0.94404 0.97681 1.23325 0.83078 1.05396 0.92909 1.98761 1.29239 1.89945 1.98719 1.21868 1.00829 1.00407 0.94792 1.21839 0.94900 0.85735 0.98373 0.94005 0.90024 0.97962 0.91078 0.88170 0.80760 0.79587 0.84119 0.86487 0.83883 0.95046 0.95783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.02 10.09 21.65 0.22 -54.81 16 2 C -0.06 -3.31 5.49 84.86 0.47 -2.85 16 3 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 4 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.25 -13.76 10.28 84.03 0.86 -12.90 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.62 -31.90 3.40 -691.25 -2.35 -34.25 16 10 C 0.15 7.34 5.89 86.86 0.51 7.85 16 11 C -0.12 -4.40 6.81 31.98 0.22 -4.18 16 12 C 0.09 2.87 2.75 31.78 0.09 2.96 16 13 H 0.10 2.87 6.29 -2.39 -0.02 2.85 16 14 O -0.30 -9.54 9.88 -92.55 -0.91 -10.45 16 15 C 0.07 1.92 6.69 22.60 0.15 2.07 16 16 C 0.07 1.77 11.14 84.82 0.95 2.71 16 17 N -0.46 -10.95 10.36 -195.44 -2.02 -12.97 16 18 C 0.07 1.42 10.86 84.68 0.92 2.34 16 19 C -0.12 -2.21 5.27 -19.79 -0.10 -2.32 16 20 C 0.02 0.21 6.81 71.24 0.48 0.70 16 21 Cl -0.19 -3.86 29.13 -2.72 -0.08 -3.94 16 22 C -0.15 -3.66 8.69 22.56 0.20 -3.47 16 23 C 0.12 4.89 6.85 86.67 0.59 5.48 16 24 H 0.25 14.09 8.31 -92.70 -0.77 13.32 16 25 H 0.08 4.44 5.88 -2.39 -0.01 4.43 16 26 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.10 2.96 8.14 -2.39 -0.02 2.95 16 29 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.19 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.14 0.98 8.10 -2.39 -0.02 0.96 16 32 H 0.12 1.35 8.10 -2.38 -0.02 1.33 16 33 H 0.14 3.47 5.80 -2.91 -0.02 3.45 16 34 H 0.03 1.28 7.84 -2.39 -0.02 1.26 16 35 H 0.02 1.06 8.06 -2.39 -0.02 1.04 16 Total: -1.00 -65.77 307.96 3.31 -62.46 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.10 Total: 8.35 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.33 Total: -1.61 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -4.16 Total: -102.02 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -0.91 Total: -10.45 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 17 Polarization: -3.86 SS G_CDS: -0.08 Total: -3.94 kcal Total: -65.77 3.31 -62.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223082913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.617 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds