Wall clock time and date at job start Tue Mar 31 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09002 * 111.03702 * 277.41305 * 12 11 10 14 14 O 1.42897 * 111.00383 * 153.57711 * 12 11 10 15 15 C 1.35909 * 117.00426 * 156.34871 * 14 12 11 16 16 C 1.38750 * 120.46894 * 359.97438 * 15 14 12 17 17 N 1.31816 * 120.68085 * 179.97438 * 16 15 14 18 18 C 1.31878 * 121.78071 * 0.02562 * 17 16 15 19 19 C 1.38206 * 120.88577 * 0.02562 * 18 17 16 20 20 C 1.50707 * 120.38578 * 179.97438 * 19 18 17 21 21 Cl 1.80299 * 109.46929 * 269.99528 * 20 19 18 22 22 C 1.38578 * 119.22683 * 359.67661 * 19 18 17 23 23 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 24 24 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 26 26 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 27 27 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 28 28 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 29 29 H 1.08000 * 119.66396 * 0.02584 * 16 15 14 30 30 H 1.08003 * 119.55491 * 179.97438 * 18 17 16 31 31 H 1.08997 * 109.47393 * 29.99108 * 20 19 18 32 32 H 1.09000 * 109.47229 * 149.99505 * 20 19 18 33 33 H 1.08002 * 120.81699 * 180.32519 * 22 19 18 34 34 H 1.09002 * 110.36346 * 322.70225 * 23 9 7 35 35 H 1.08999 * 110.37028 * 84.91483 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9150 -4.4026 -2.0770 14 8 1.0590 -5.9637 -0.7048 15 6 1.8513 -6.6806 -1.5448 16 6 2.4546 -6.0703 -2.6351 17 7 3.2241 -6.7615 -3.4521 18 6 3.4507 -8.0480 -3.2709 19 6 2.8839 -8.7254 -2.2079 20 6 3.1499 -10.1958 -2.0119 21 17 1.9029 -11.1548 -2.8927 22 6 2.0730 -8.0354 -1.3209 23 6 1.9495 -3.7169 -0.2720 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5671 -2.1845 0.7439 26 1 -0.5328 -1.9641 -1.0279 27 1 -1.2640 -4.1759 -1.0702 28 1 -0.6329 -4.5159 0.5729 29 1 2.2928 -5.0179 -2.8157 30 1 4.0871 -8.5795 -3.9630 31 1 4.1383 -10.4412 -2.4005 32 1 3.1079 -10.4341 -0.9491 33 1 1.6212 -8.5381 -0.4785 34 1 2.8620 -3.6576 -0.8654 35 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223082916.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:06 Heat of formation + Delta-G solvation = 15.032423 kcal Electronic energy + Delta-G solvation = -19377.896874 eV Core-core repulsion = 16209.924495 eV Total energy + Delta-G solvation = -3167.972379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.77114 -38.68138 -36.48669 -36.25840 -33.49339 -32.45803 -30.77375 -29.26900 -27.82287 -27.02109 -24.64989 -23.69500 -22.38899 -20.34173 -20.22253 -18.07921 -17.31024 -16.82382 -16.50223 -15.37672 -14.98351 -14.73775 -14.47516 -14.16614 -13.99153 -13.76413 -13.33137 -13.10096 -12.92555 -12.57472 -12.28096 -12.12382 -11.64410 -11.03805 -10.99686 -10.87738 -10.75606 -10.48527 -10.42106 -10.13808 -10.04467 -9.82604 -9.65240 -9.48448 -8.66801 -8.39940 -6.95897 -5.81646 -3.15575 0.69060 1.21151 2.13624 3.13422 3.36582 3.42130 3.43852 3.70196 4.17770 4.40565 4.46188 4.47398 4.61817 4.77631 4.98819 5.04952 5.19569 5.21670 5.37450 5.45391 5.51543 5.62429 5.87946 5.90112 6.06850 6.22437 6.33456 6.40127 6.45661 6.57450 7.40968 7.43346 7.48764 7.72238 7.83986 8.14043 9.11052 9.70833 10.34844 11.30490 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040570 B = 0.003273 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.993975 B = 8553.026456 C = 8966.123941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.234 4.234 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.177 3.823 11 C -0.135 4.135 12 C 0.060 3.940 13 H 0.084 0.916 14 O -0.297 6.297 15 C 0.096 3.904 16 C 0.026 3.974 17 N -0.446 5.446 18 C 0.071 3.929 19 C -0.126 4.126 20 C 0.016 3.984 21 Cl -0.175 7.175 22 C -0.098 4.098 23 C 0.121 3.879 24 H 0.254 0.746 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.143 0.857 34 H 0.044 0.956 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.026 -19.344 -3.887 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.743 3.257 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.362 4.362 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.052 3.948 11 C -0.173 4.173 12 C 0.003 3.997 13 H 0.102 0.898 14 O -0.208 6.208 15 C 0.047 3.953 16 C -0.132 4.132 17 N -0.154 5.154 18 C -0.087 4.087 19 C -0.129 4.129 20 C -0.047 4.047 21 Cl -0.148 7.148 22 C -0.124 4.124 23 C -0.006 4.006 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.184 0.816 30 H 0.173 0.827 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.161 0.839 34 H 0.062 0.938 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.135 -18.797 -4.446 19.754 hybrid contribution 0.013 0.581 0.595 0.832 sum 4.148 -18.216 -3.851 19.075 Atomic orbital electron populations 1.69946 1.04972 1.25341 1.56350 1.24841 0.95738 0.97779 1.01722 0.86082 0.78708 0.83294 0.77595 1.21453 1.21666 1.20538 1.19059 0.91227 0.82201 1.43674 0.90224 1.44336 1.01609 1.00621 1.86364 1.21237 0.84572 0.87359 1.01607 1.23043 0.94304 0.99318 1.00630 1.24014 0.99310 0.76300 1.00054 0.89813 1.86135 1.62330 1.23349 1.48999 1.20061 0.92111 0.92131 0.91015 1.23230 0.96440 1.01449 0.92058 1.67611 1.12794 1.07868 1.27146 1.22495 0.99578 0.90462 0.96189 1.20488 0.99831 0.95323 0.97237 1.23057 0.93582 0.88090 1.00004 1.98748 1.60876 1.75051 1.80141 1.20755 0.99299 0.91601 1.00777 1.21910 0.94204 0.87122 0.97389 0.93548 0.93322 0.92734 0.91236 0.91023 0.81615 0.82694 0.87438 0.87648 0.83914 0.93790 0.95203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.36 55.49 0.57 -25.78 16 2 C 0.00 -0.11 5.48 -17.43 -0.10 -0.21 16 3 Si 0.91 21.72 29.56 -169.99 -5.02 16.69 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.40 10.26 -15.06 -0.15 -6.56 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.60 -15.04 3.39 -170.07 -0.58 -15.62 16 10 C 0.18 4.15 5.38 -3.07 -0.02 4.13 16 11 C -0.13 -2.45 6.69 -24.89 -0.17 -2.62 16 12 C 0.06 1.04 2.90 -24.58 -0.07 0.97 16 13 H 0.08 1.40 5.99 -51.93 -0.31 1.09 16 14 O -0.30 -4.76 9.96 -19.46 -0.19 -4.96 16 15 C 0.10 1.37 6.71 -39.07 -0.26 1.11 16 16 C 0.03 0.39 10.20 -17.37 -0.18 0.21 16 17 N -0.45 -6.32 10.36 -13.12 -0.14 -6.45 16 18 C 0.07 0.80 10.85 -17.54 -0.19 0.61 16 19 C -0.13 -1.27 5.27 -104.50 -0.55 -1.82 16 20 C 0.02 0.11 6.81 36.01 0.25 0.35 16 21 Cl -0.17 -1.58 29.13 -51.86 -1.51 -3.09 16 22 C -0.10 -1.15 9.81 -39.14 -0.38 -1.53 16 23 C 0.12 2.47 6.97 -2.53 -0.02 2.45 16 24 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.05 1.26 7.62 -51.93 -0.40 0.86 16 26 H 0.05 1.40 7.29 -51.93 -0.38 1.02 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.17 2.46 5.90 -52.49 -0.31 2.15 16 30 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.11 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.11 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 309.23 15.07 4.66 4.66 Total: -1.00 -30.32 309.23 -8.37 -38.69 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.32 Total: -1.22 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -1.84 Total: -2.92 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.14 Total: -47.86 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.19 Total: -4.96 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -1.51 Total: -3.09 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.32 -8.37 -38.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223082916.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.722 kcal (2) G-P(sol) polarization free energy of solvation -30.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds