Wall clock time and date at job start Tue Mar 31 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48495 * 109.47440 * 239.99819 * 3 2 1 5 5 H 1.48501 * 109.46913 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47041 * 119.99893 * 3 2 1 7 7 C 1.37887 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99791 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.47951 * 111.00408 * 169.99989 * 10 9 7 12 12 C 1.53936 * 86.18161 * 222.41444 * 11 10 9 13 13 O 1.42900 * 113.73243 * 138.07612 * 12 11 10 14 14 C 1.35906 * 117.00006 * 157.62729 * 13 12 11 15 15 C 1.39138 * 120.47495 * 5.93359 * 14 13 12 16 16 C 1.38531 * 118.38014 * 179.97438 * 15 14 13 17 17 C 1.38261 * 119.21672 * 0.02562 * 16 15 14 18 18 N 1.31844 * 120.88826 * 359.97438 * 17 16 15 19 19 C 1.31841 * 121.78104 * 0.02562 * 18 17 16 20 20 C 1.50695 * 119.65722 * 180.02562 * 19 18 17 21 21 Cl 1.80301 * 109.47388 * 89.99822 * 20 19 18 22 22 C 1.47960 * 111.00162 * 70.63484 * 10 9 7 23 23 H 0.97003 * 119.99583 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47722 * 59.99981 * 9 7 2 25 25 H 1.09001 * 109.47342 * 299.99937 * 9 7 2 26 26 H 1.09001 * 113.75860 * 108.09634 * 11 10 9 27 27 H 1.08999 * 113.76135 * 336.73560 * 11 10 9 28 28 H 1.08993 * 113.73130 * 269.25306 * 12 11 10 29 29 H 1.08007 * 120.81249 * 0.25422 * 15 14 13 30 30 H 1.08003 * 120.39264 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.55268 * 179.97438 * 17 16 15 32 32 H 1.09007 * 109.46906 * 210.00032 * 20 19 18 33 33 H 1.09004 * 109.47367 * 329.99261 * 20 19 18 34 34 H 1.09006 * 113.75617 * 23.27142 * 22 10 9 35 35 H 1.09001 * 113.76227 * 251.90554 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0001 9 6 1.2508 -2.4992 -0.0017 10 7 2.2053 -3.6159 -0.0015 11 6 1.5157 -4.9029 0.2373 12 6 2.6916 -5.2419 1.1711 13 8 2.2948 -5.8758 2.3888 14 6 3.2355 -6.6130 3.0357 15 6 4.5514 -6.6313 2.5838 16 6 5.4748 -7.3972 3.2763 17 6 5.0621 -8.1133 4.3847 18 7 3.8071 -8.0743 4.7868 19 6 2.8977 -7.3581 4.1558 20 6 1.4767 -7.3478 4.6574 21 17 1.2700 -6.0118 5.8505 22 6 2.8970 -3.7220 1.3022 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5563 -0.8919 25 1 0.6238 -2.5575 0.8880 26 1 1.4577 -5.5403 -0.6450 27 1 0.5608 -4.8005 0.7529 28 1 3.5134 -5.7560 0.6727 29 1 4.8466 -6.0586 1.7169 30 1 6.5050 -7.4346 2.9542 31 1 5.7774 -8.7126 4.9284 32 1 0.7966 -7.1950 3.8193 33 1 1.2537 -8.3010 5.1370 34 1 2.3461 -3.2741 2.1293 35 1 3.9427 -3.4158 1.2708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223161621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:59 Heat of formation + Delta-G solvation = 25.576814 kcal Electronic energy + Delta-G solvation = -19423.653482 eV Core-core repulsion = 16256.138342 eV Total energy + Delta-G solvation = -3167.515140 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.96285 -39.44999 -37.19048 -36.01306 -33.05244 -32.89488 -31.30361 -29.25629 -27.40813 -25.92576 -25.37896 -23.57443 -22.50077 -21.40437 -19.50282 -18.41243 -17.10691 -16.54510 -16.38049 -15.71559 -15.19464 -14.95812 -14.40243 -14.31691 -14.12829 -13.78434 -13.36294 -13.32334 -12.81758 -12.57118 -12.22119 -12.10343 -11.99108 -11.48863 -10.96302 -10.76672 -10.67988 -10.45075 -10.36725 -10.36470 -9.85736 -9.85360 -9.71677 -9.26283 -8.55950 -8.46251 -7.98557 -6.10595 -4.13299 0.73069 1.09543 2.34463 3.03901 3.29413 3.33667 3.36293 3.64945 3.95552 4.33939 4.36217 4.47912 4.67530 4.69505 4.76423 4.97542 5.01633 5.13357 5.17686 5.25674 5.43674 5.60738 5.82845 5.88805 5.92321 5.97244 6.17402 6.26256 6.34436 6.49089 7.10524 7.22943 7.52370 7.73681 7.76390 7.99387 8.30762 8.92827 9.51484 11.00564 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.004027 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.180765 B = 6952.204994 C = 7425.182572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.164 3.836 10 N -0.472 5.472 11 C 0.009 3.991 12 C 0.038 3.962 13 O -0.291 6.291 14 C 0.114 3.886 15 C -0.168 4.168 16 C -0.121 4.121 17 C 0.053 3.947 18 N -0.435 5.435 19 C 0.071 3.929 20 C 0.029 3.971 21 Cl -0.166 7.166 22 C 0.009 3.991 23 H 0.263 0.737 24 H 0.035 0.965 25 H 0.003 0.997 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.102 0.898 29 H 0.147 0.853 30 H 0.139 0.861 31 H 0.159 0.841 32 H 0.112 0.888 33 H 0.107 0.893 34 H 0.080 0.920 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.349 -17.191 7.020 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.038 3.962 10 N -0.197 5.197 11 C -0.120 4.120 12 C -0.018 4.018 13 O -0.202 6.202 14 C 0.064 3.936 15 C -0.194 4.194 16 C -0.141 4.141 17 C -0.105 4.105 18 N -0.144 5.144 19 C -0.068 4.068 20 C -0.034 4.034 21 Cl -0.140 7.140 22 C -0.120 4.120 23 H 0.073 0.927 24 H 0.053 0.947 25 H 0.021 0.979 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.120 0.880 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.176 0.824 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.099 0.901 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.047 -17.267 7.268 20.016 hybrid contribution 0.421 1.581 -0.182 1.646 sum 7.467 -15.686 7.087 18.762 Atomic orbital electron populations 1.69941 1.06085 1.27102 1.50342 1.24982 0.94886 0.99401 0.95109 0.86536 0.79473 0.82593 0.78697 1.20093 1.21210 1.20210 1.21012 0.93369 0.89883 1.51088 0.92042 1.20224 0.90793 0.88286 0.96934 1.68616 1.21570 1.02073 1.27481 1.24167 0.96074 0.94870 0.96876 1.25108 1.00002 0.93704 0.82972 1.86268 1.36265 1.60681 1.37000 1.19924 0.89164 0.91311 0.93165 1.21842 0.92381 1.02506 1.02673 1.22061 1.00567 0.95822 0.95654 1.22564 0.92368 0.99787 0.95817 1.67401 1.02079 1.16611 1.28348 1.20353 0.96053 0.97310 0.93100 1.22825 0.92751 0.92854 0.95005 1.98741 1.97662 1.54565 1.63029 1.24234 1.01640 0.91618 0.94484 0.92698 0.94654 0.97941 0.89284 0.90539 0.87987 0.83549 0.84318 0.82378 0.86936 0.87427 0.90134 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.52 -14.33 8.84 -34.44 -0.30 -14.63 16 8 H 0.06 1.69 7.80 -52.49 -0.41 1.28 16 9 C 0.16 4.18 4.58 -4.98 -0.02 4.15 16 10 N -0.47 -9.78 6.25 -239.99 -1.50 -11.28 16 11 C 0.01 0.15 7.81 -2.77 -0.02 0.13 16 12 C 0.04 0.57 3.87 -25.80 -0.10 0.47 16 13 O -0.29 -4.25 9.21 -19.45 -0.18 -4.43 16 14 C 0.11 1.50 6.66 -39.07 -0.26 1.24 16 15 C -0.17 -1.89 9.10 -39.14 -0.36 -2.24 16 16 C -0.12 -1.13 10.11 -39.46 -0.40 -1.53 16 17 C 0.05 0.53 11.18 -17.54 -0.20 0.33 16 18 N -0.43 -5.38 10.27 -9.35 -0.10 -5.48 16 19 C 0.07 0.91 6.17 -82.42 -0.51 0.40 16 20 C 0.03 0.33 6.73 36.00 0.24 0.58 16 21 Cl -0.17 -2.28 29.13 -51.86 -1.51 -3.79 16 22 C 0.01 0.17 7.29 -2.77 -0.02 0.15 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.00 0.07 7.69 -51.93 -0.40 -0.32 16 26 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.08 1.33 7.79 -51.93 -0.40 0.92 16 28 H 0.10 1.28 6.06 -51.93 -0.31 0.97 16 29 H 0.15 1.48 6.07 -52.48 -0.32 1.17 16 30 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 32 H 0.11 1.22 7.52 -51.93 -0.39 0.83 16 33 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.08 1.64 7.78 -51.93 -0.40 1.23 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 314.52 15.07 4.74 4.74 Total: -1.00 -30.97 314.52 -9.19 -40.16 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.31 Total: -1.32 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -2.04 Total: -9.41 kcal Atomic # 7 Polarization: -41.57 SS G_CDS: -0.86 Total: -42.43 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.18 Total: -4.43 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -1.51 Total: -3.79 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.97 -9.19 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223161621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.737 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds