Wall clock time and date at job start Tue Mar 31 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00507 * 2 1 4 4 H 1.48495 * 109.47440 * 239.99819 * 3 2 1 5 5 H 1.48501 * 109.46913 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47041 * 119.99893 * 3 2 1 7 7 C 1.37887 * 119.99512 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99968 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99791 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.47951 * 111.00408 * 169.99989 * 10 9 7 12 12 C 1.53936 * 86.18161 * 222.41444 * 11 10 9 13 13 O 1.42900 * 113.73243 * 138.07612 * 12 11 10 14 14 C 1.35906 * 117.00006 * 157.62729 * 13 12 11 15 15 C 1.39138 * 120.47495 * 5.93359 * 14 13 12 16 16 C 1.38531 * 118.38014 * 179.97438 * 15 14 13 17 17 C 1.38261 * 119.21672 * 0.02562 * 16 15 14 18 18 N 1.31844 * 120.88826 * 359.97438 * 17 16 15 19 19 C 1.31841 * 121.78104 * 0.02562 * 18 17 16 20 20 C 1.50695 * 119.65722 * 180.02562 * 19 18 17 21 21 Cl 1.80301 * 109.47388 * 89.99822 * 20 19 18 22 22 C 1.47960 * 111.00162 * 70.63484 * 10 9 7 23 23 H 0.97003 * 119.99583 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47722 * 59.99981 * 9 7 2 25 25 H 1.09001 * 109.47342 * 299.99937 * 9 7 2 26 26 H 1.09001 * 113.75860 * 108.09634 * 11 10 9 27 27 H 1.08999 * 113.76135 * 336.73560 * 11 10 9 28 28 H 1.08993 * 113.73130 * 269.25306 * 12 11 10 29 29 H 1.08007 * 120.81249 * 0.25422 * 15 14 13 30 30 H 1.08003 * 120.39264 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.55268 * 179.97438 * 17 16 15 32 32 H 1.09007 * 109.46906 * 210.00032 * 20 19 18 33 33 H 1.09004 * 109.47367 * 329.99261 * 20 19 18 34 34 H 1.09006 * 113.75617 * 23.27142 * 22 10 9 35 35 H 1.09001 * 113.76227 * 251.90554 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1943 -0.0001 9 6 1.2508 -2.4992 -0.0017 10 7 2.2053 -3.6159 -0.0015 11 6 1.5157 -4.9029 0.2373 12 6 2.6916 -5.2419 1.1711 13 8 2.2948 -5.8758 2.3888 14 6 3.2355 -6.6130 3.0357 15 6 4.5514 -6.6313 2.5838 16 6 5.4748 -7.3972 3.2763 17 6 5.0621 -8.1133 4.3847 18 7 3.8071 -8.0743 4.7868 19 6 2.8977 -7.3581 4.1558 20 6 1.4767 -7.3478 4.6574 21 17 1.2700 -6.0118 5.8505 22 6 2.8970 -3.7220 1.3022 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5563 -0.8919 25 1 0.6238 -2.5575 0.8880 26 1 1.4577 -5.5403 -0.6450 27 1 0.5608 -4.8005 0.7529 28 1 3.5134 -5.7560 0.6727 29 1 4.8466 -6.0586 1.7169 30 1 6.5050 -7.4346 2.9542 31 1 5.7774 -8.7126 4.9284 32 1 0.7966 -7.1950 3.8193 33 1 1.2537 -8.3010 5.1370 34 1 2.3461 -3.2741 2.1293 35 1 3.9427 -3.4158 1.2708 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223161621.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:58 Heat of formation + Delta-G solvation = 3.999325 kcal Electronic energy + Delta-G solvation = -19424.589152 eV Core-core repulsion = 16256.138342 eV Total energy + Delta-G solvation = -3168.450810 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.96872 -40.69033 -38.39711 -37.00144 -35.03332 -33.84538 -32.29802 -31.01137 -28.27290 -27.53833 -26.92530 -24.86508 -23.39908 -22.96630 -20.87122 -19.46088 -18.61959 -18.03003 -17.33802 -16.95592 -16.64496 -16.31805 -15.85474 -15.60008 -15.05990 -14.77510 -14.69219 -14.42824 -14.04025 -13.88835 -13.79215 -13.65112 -13.28660 -12.91227 -12.74878 -12.62426 -12.21364 -11.72866 -11.67971 -11.57242 -11.38935 -11.23224 -10.70683 -10.67896 -10.61214 -9.73787 -9.40353 -8.26343 -6.37351 -0.11807 0.23521 1.38782 1.41754 1.43654 1.49816 1.95204 2.37223 2.79835 3.06666 3.11338 3.14865 3.32836 3.49599 3.75989 3.85898 3.97572 4.13425 4.25707 4.30366 4.44315 4.48698 4.61052 4.63906 4.69092 4.81619 4.87704 5.02750 5.06776 5.10340 5.45664 5.49680 5.71058 6.02567 6.19414 6.29495 6.76700 6.89797 7.32661 8.85311 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020641 B = 0.004027 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.180765 B = 6952.204994 C = 7425.182572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.179 3.821 10 N -0.483 5.483 11 C 0.006 3.994 12 C 0.069 3.931 13 O -0.305 6.305 14 C 0.088 3.912 15 C -0.172 4.172 16 C -0.110 4.110 17 C 0.053 3.947 18 N -0.454 5.454 19 C 0.056 3.944 20 C 0.033 3.967 21 Cl -0.190 7.190 22 C 0.002 3.998 23 H 0.266 0.734 24 H 0.008 0.992 25 H -0.027 1.027 26 H 0.116 0.884 27 H 0.063 0.937 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.177 0.823 31 H 0.191 0.809 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.051 0.949 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.039 -18.278 6.988 21.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.081 0.919 9 C 0.052 3.948 10 N -0.207 5.207 11 C -0.123 4.123 12 C 0.013 3.987 13 O -0.216 6.216 14 C 0.039 3.961 15 C -0.198 4.198 16 C -0.130 4.130 17 C -0.105 4.105 18 N -0.164 5.164 19 C -0.082 4.082 20 C -0.030 4.030 21 Cl -0.164 7.164 22 C -0.127 4.127 23 H 0.075 0.925 24 H 0.026 0.974 25 H -0.009 1.009 26 H 0.134 0.866 27 H 0.081 0.919 28 H 0.153 0.847 29 H 0.176 0.824 30 H 0.194 0.806 31 H 0.208 0.792 32 H 0.132 0.868 33 H 0.143 0.857 34 H 0.070 0.930 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.740 -18.379 7.243 22.026 hybrid contribution -0.332 1.771 -0.126 1.807 sum 9.408 -16.608 7.117 20.371 Atomic orbital electron populations 1.70072 1.07777 1.28145 1.51235 1.25926 0.95754 1.03314 0.94501 0.85432 0.78213 0.77806 0.79186 1.19011 1.20732 1.19334 1.21368 0.93598 0.91116 1.50927 0.91915 1.19855 0.90905 0.89927 0.94156 1.68482 1.21011 1.02053 1.29140 1.24238 0.96186 0.93218 0.98654 1.24717 0.99425 0.91600 0.82985 1.86232 1.37121 1.61274 1.36982 1.20124 0.89881 0.92174 0.93878 1.22107 0.91807 1.02722 1.03185 1.22472 1.01912 0.94031 0.94572 1.23232 0.92006 0.99330 0.95920 1.67450 1.03117 1.17040 1.28831 1.20438 0.96530 0.97863 0.93361 1.22967 0.92832 0.92604 0.94625 1.98736 1.97731 1.55936 1.64000 1.24230 1.01372 0.94789 0.92279 0.92539 0.97395 1.00899 0.86582 0.91899 0.84746 0.82352 0.80602 0.79207 0.86796 0.85700 0.93028 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.53 -30.20 8.84 25.60 0.23 -29.97 16 8 H 0.06 3.46 7.80 -2.91 -0.02 3.44 16 9 C 0.18 9.51 4.58 85.55 0.39 9.90 16 10 N -0.48 -20.17 6.25 -916.41 -5.73 -25.90 16 11 C 0.01 0.19 7.81 86.41 0.67 0.86 16 12 C 0.07 1.95 3.87 31.24 0.12 2.07 16 13 O -0.30 -8.69 9.21 -92.50 -0.85 -9.55 16 14 C 0.09 2.18 6.66 22.60 0.15 2.33 16 15 C -0.17 -3.35 9.10 22.56 0.21 -3.15 16 16 C -0.11 -1.61 10.11 22.35 0.23 -1.39 16 17 C 0.05 0.88 11.18 84.70 0.95 1.83 16 18 N -0.45 -10.32 10.27 -183.50 -1.88 -12.21 16 19 C 0.06 1.37 6.17 42.67 0.26 1.63 16 20 C 0.03 0.74 6.73 71.23 0.48 1.22 16 21 Cl -0.19 -5.27 29.13 -2.72 -0.08 -5.35 16 22 C 0.00 0.09 7.29 86.41 0.63 0.72 16 23 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H -0.03 -1.55 7.69 -2.39 -0.02 -1.56 16 26 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.06 2.26 7.79 -2.39 -0.02 2.24 16 28 H 0.14 2.95 6.06 -2.39 -0.01 2.93 16 29 H 0.16 2.63 6.07 -2.91 -0.02 2.61 16 30 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 31 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.11 2.50 7.52 -2.38 -0.02 2.48 16 33 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.05 2.19 7.78 -2.38 -0.02 2.17 16 35 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 Total: -1.00 -68.86 314.52 -0.36 -69.22 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.10 Total: 6.89 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.78 Total: -13.26 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -7.33 Total: -94.19 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.85 Total: -9.55 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 17 Polarization: -5.27 SS G_CDS: -0.08 Total: -5.35 kcal Total: -68.86 -0.36 -69.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223161621.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.218 kcal (2) G-P(sol) polarization free energy of solvation -68.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds