Wall clock time and date at job start Tue Mar 31 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00503 * 2 1 4 4 H 1.48500 * 109.46845 * 85.02016 * 3 2 1 5 5 H 1.48500 * 109.46905 * 325.02108 * 3 2 1 6 6 H 1.48502 * 109.47029 * 205.02197 * 3 2 1 7 7 C 1.38812 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00366 * 187.37420 * 7 2 1 9 9 N 1.36942 * 119.99928 * 7.38075 * 7 2 1 10 10 C 1.47026 * 125.64594 * 6.33469 * 9 7 2 11 11 C 1.54336 * 107.26214 * 178.85090 * 10 9 7 12 12 C 1.55152 * 103.02136 * 338.14337 * 11 10 9 13 13 H 1.08997 * 111.03659 * 277.21226 * 12 11 10 14 14 O 1.42903 * 111.00285 * 153.38059 * 12 11 10 15 15 C 1.35672 * 117.00203 * 156.34944 * 14 12 11 16 16 N 1.32285 * 119.68320 * 359.72688 * 15 14 12 17 17 C 1.31937 * 121.64749 * 179.71309 * 16 15 14 18 18 C 1.38089 * 120.83004 * 0.56483 * 17 16 15 19 19 C 1.38782 * 119.29108 * 359.72213 * 18 17 16 20 20 C 1.38415 * 118.48567 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.44731 * 180.02562 * 20 19 18 22 22 Cl 1.80300 * 109.47296 * 269.97983 * 21 20 19 23 23 C 1.47419 * 125.64839 * 186.65061 * 9 7 2 24 24 H 0.96999 * 119.99355 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.88022 * 298.40008 * 10 9 7 26 26 H 1.08996 * 109.87722 * 59.56577 * 10 9 7 27 27 H 1.09000 * 110.84605 * 219.67155 * 11 10 9 28 28 H 1.09004 * 110.51446 * 96.45669 * 11 10 9 29 29 H 1.08000 * 119.58390 * 180.31180 * 17 16 15 30 30 H 1.08000 * 120.35264 * 179.70378 * 18 17 16 31 31 H 1.08003 * 120.76043 * 180.02562 * 19 18 17 32 32 H 1.09004 * 109.47264 * 29.97735 * 21 20 19 33 33 H 1.09000 * 109.47735 * 149.97530 * 21 20 19 34 34 H 1.09002 * 110.36544 * 322.92392 * 23 9 7 35 35 H 1.08993 * 110.37431 * 85.25132 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.3926 2.1071 1.3948 5 1 1.5044 2.6200 -0.8026 6 1 3.5965 1.4119 -0.5922 7 6 2.0102 -1.2022 -0.0005 8 1 3.0834 -1.2062 0.1195 9 7 1.3340 -2.3831 -0.1534 10 6 -0.0986 -2.5172 -0.4558 11 6 -0.4046 -4.0261 -0.5640 12 6 0.9859 -4.6438 -0.8676 13 1 1.2197 -4.5779 -1.9302 14 8 1.0553 -5.9971 -0.4137 15 6 1.9656 -6.8029 -1.0160 16 7 2.7317 -6.3198 -1.9802 17 6 3.6331 -7.0671 -2.5882 18 6 3.8013 -8.3937 -2.2439 19 6 3.0130 -8.9401 -1.2408 20 6 2.0801 -8.1287 -0.6187 21 6 1.2013 -8.6760 0.4764 22 17 -0.3113 -9.3427 -0.2435 23 6 1.9204 -3.7305 -0.0356 24 1 -0.4849 0.8401 0.0004 25 1 -0.6897 -2.0735 0.3454 26 1 -0.3252 -2.0261 -1.4021 27 1 -1.1006 -4.2232 -1.3794 28 1 -0.7972 -4.4049 0.3797 29 1 4.2443 -6.6369 -3.3678 30 1 4.5383 -8.9997 -2.7500 31 1 3.1249 -9.9748 -0.9523 32 1 1.7313 -9.4678 1.0060 33 1 0.9502 -7.8773 1.1743 34 1 2.9290 -3.7427 -0.4488 35 1 1.9327 -4.0492 1.0066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223220340.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:45 Heat of formation + Delta-G solvation = 15.486806 kcal Electronic energy + Delta-G solvation = -19745.621587 eV Core-core repulsion = 16577.668911 eV Total energy + Delta-G solvation = -3167.952676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72167 -38.34968 -36.22220 -36.07625 -33.44992 -32.34433 -31.03139 -29.21685 -27.36588 -27.00928 -24.69035 -23.30235 -22.31483 -20.37395 -20.09590 -18.27678 -17.20815 -16.59085 -15.87379 -15.59744 -14.90191 -14.63274 -14.31656 -14.06462 -13.86226 -13.63547 -13.32368 -12.96363 -12.66986 -12.38814 -12.19323 -11.97122 -11.51776 -10.97319 -10.80106 -10.71224 -10.45498 -10.37618 -10.25126 -10.09602 -9.88747 -9.85916 -9.65599 -9.49506 -8.62662 -8.40986 -6.84105 -5.71164 -3.07226 0.82731 1.22424 2.37567 3.17324 3.40754 3.46089 3.48523 3.75403 4.16941 4.48489 4.54161 4.60971 4.77369 5.02092 5.13767 5.25056 5.34926 5.42745 5.53682 5.57967 5.75367 5.79662 5.86925 5.99966 6.14808 6.33638 6.45425 6.47980 6.65587 6.74338 7.44979 7.50358 7.63765 7.79727 7.86559 8.24621 9.19663 9.80317 10.45543 11.39345 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.004177 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.005462 B = 6702.508628 C = 7469.987799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.175 3.825 11 C -0.137 4.137 12 C 0.074 3.926 13 H 0.095 0.905 14 O -0.291 6.291 15 C 0.354 3.646 16 N -0.533 5.533 17 C 0.153 3.847 18 C -0.224 4.224 19 C -0.024 4.024 20 C -0.191 4.191 21 C 0.026 3.974 22 Cl -0.182 7.182 23 C 0.126 3.874 24 H 0.253 0.747 25 H 0.066 0.934 26 H 0.035 0.965 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.160 0.840 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.045 0.955 35 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -19.810 -2.471 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.327 5.327 10 C 0.050 3.950 11 C -0.175 4.175 12 C 0.018 3.982 13 H 0.113 0.887 14 O -0.197 6.197 15 C 0.175 3.825 16 N -0.256 5.256 17 C -0.004 4.004 18 C -0.244 4.244 19 C -0.049 4.049 20 C -0.194 4.194 21 C -0.037 4.037 22 Cl -0.155 7.155 23 C -0.001 4.001 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.177 0.823 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.063 0.937 35 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 4.062 -18.779 -2.531 19.380 hybrid contribution 0.616 0.131 0.019 0.630 sum 4.679 -18.648 -2.512 19.390 Atomic orbital electron populations 1.69941 1.04952 1.25123 1.56747 1.24813 0.95682 0.97727 1.02118 0.86091 0.78700 0.83428 0.77496 1.21605 1.21585 1.20599 1.19050 0.90930 0.82416 1.43275 0.90416 1.44321 1.05472 0.99593 1.83357 1.21240 0.85689 0.87478 1.00573 1.23055 0.94140 0.98844 1.01478 1.23812 0.98450 0.76101 0.99860 0.88739 1.86265 1.51520 1.23810 1.58060 1.19712 0.87083 0.88014 0.87720 1.67503 1.08597 1.39303 1.10229 1.22558 0.92040 0.90285 0.95485 1.21914 1.03815 0.97207 1.01505 1.21274 0.91736 0.99193 0.92742 1.19693 1.02926 0.92551 1.04226 1.22866 0.85265 1.01143 0.94394 1.98729 1.42072 1.87832 1.86868 1.21800 0.95473 0.86472 0.96320 0.93688 0.91597 0.94682 0.91480 0.91188 0.82316 0.84548 0.84299 0.88155 0.87296 0.93715 0.95939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.22 10.48 55.49 0.58 -26.63 16 2 C -0.01 -0.20 5.45 -17.43 -0.09 -0.30 16 3 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -6.50 10.26 -15.06 -0.15 -6.66 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 9 N -0.60 -15.82 3.39 -170.07 -0.58 -16.40 16 10 C 0.17 4.33 5.43 -3.06 -0.02 4.31 16 11 C -0.14 -2.70 6.68 -24.89 -0.17 -2.87 16 12 C 0.07 1.44 3.23 -24.58 -0.08 1.37 16 13 H 0.09 1.89 7.16 -51.93 -0.37 1.52 16 14 O -0.29 -5.04 8.99 -18.72 -0.17 -5.21 16 15 C 0.35 5.45 7.46 -17.12 -0.13 5.32 16 16 N -0.53 -8.22 8.73 -13.33 -0.12 -8.34 16 17 C 0.15 1.77 11.18 -17.56 -0.20 1.57 16 18 C -0.22 -2.07 10.11 -39.43 -0.40 -2.47 16 19 C -0.02 -0.23 9.85 -39.31 -0.39 -0.61 16 20 C -0.19 -2.30 5.29 -104.32 -0.55 -2.86 16 21 C 0.03 0.27 6.58 36.00 0.24 0.51 16 22 Cl -0.18 -2.17 29.13 -51.86 -1.51 -3.68 16 23 C 0.13 2.81 6.97 -2.53 -0.02 2.79 16 24 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.07 1.80 6.99 -51.93 -0.36 1.43 16 26 H 0.03 0.93 7.91 -51.93 -0.41 0.52 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 32 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 33 H 0.11 1.21 7.55 -51.93 -0.39 0.82 16 34 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 310.69 15.07 4.68 4.68 Total: -1.00 -31.83 310.69 -8.55 -40.38 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.46 Total: -2.14 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.95 Total: 0.10 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.11 Total: -51.37 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.17 Total: -5.21 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -1.51 Total: -3.68 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.83 -8.55 -40.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223220340.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.866 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds