Wall clock time and date at job start Tue Mar 31 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48497 * 109.47158 * 269.72678 * 3 2 1 5 5 H 1.48498 * 109.47316 * 29.73116 * 3 2 1 6 6 H 1.48508 * 109.47018 * 149.72586 * 3 2 1 7 7 C 1.37874 * 119.99763 * 179.72955 * 2 1 3 8 8 H 1.08006 * 120.00052 * 175.99609 * 7 2 1 9 9 C 1.50706 * 120.00269 * 355.99100 * 7 2 1 10 10 H 1.08998 * 109.46614 * 35.12973 * 9 7 2 11 11 C 1.53000 * 109.46906 * 155.12852 * 9 7 2 12 12 Cl 1.80306 * 109.46863 * 185.72076 * 11 9 7 13 13 O 1.42897 * 109.47135 * 275.12983 * 9 7 2 14 14 C 1.35696 * 116.99515 * 149.99515 * 13 9 7 15 15 C 1.39165 * 120.27042 * 179.72015 * 14 13 9 16 16 C 1.38962 * 118.07461 * 179.75066 * 15 14 13 17 17 C 1.38000 * 118.29696 * 0.29365 * 16 15 14 18 18 N 1.32510 * 119.44180 * 0.09321 * 17 16 15 19 19 N 1.28094 * 122.65475 * 359.73162 * 18 17 16 20 20 C 1.50585 * 122.30059 * 180.47209 * 17 16 15 21 21 C 1.52768 * 110.47760 * 342.03389 * 20 17 16 22 22 C 1.53304 * 108.56604 * 51.26831 * 21 20 17 23 23 C 1.50275 * 118.72203 * 179.97438 * 16 15 14 24 24 H 0.96995 * 119.99666 * 185.57690 * 1 2 3 25 25 H 1.08995 * 109.47136 * 305.72021 * 11 9 7 26 26 H 1.08999 * 109.47102 * 65.72265 * 11 9 7 27 27 H 1.08005 * 120.96533 * 359.97438 * 15 14 13 28 28 H 1.09004 * 109.29900 * 102.34357 * 20 17 16 29 29 H 1.08996 * 109.30516 * 221.72189 * 20 17 16 30 30 H 1.08996 * 109.62530 * 291.54046 * 21 20 17 31 31 H 1.09004 * 109.77333 * 171.07882 * 21 20 17 32 32 H 1.09006 * 109.64555 * 170.47181 * 22 21 20 33 33 H 1.09006 * 109.81869 * 49.94220 * 22 21 20 34 34 H 1.09005 * 109.30649 * 283.04969 * 23 16 15 35 35 H 1.08998 * 109.30946 * 42.45612 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5025 2.0431 -1.4000 5 1 1.4439 2.6543 0.6943 6 1 3.5439 1.4418 0.7059 7 6 2.0045 -1.1940 0.0056 8 1 3.0826 -1.1955 -0.0597 9 6 1.2538 -2.4972 0.1030 10 1 0.3100 -2.4138 -0.4359 11 6 2.0950 -3.6175 -0.5118 12 17 1.1319 -5.1414 -0.5480 13 8 0.9935 -2.7955 1.4761 14 6 -0.1286 -3.5076 1.7497 15 6 -0.4450 -3.8411 3.0632 16 6 -1.6078 -4.5668 3.2918 17 6 -2.3812 -4.9224 2.2056 18 7 -1.9968 -4.5673 0.9882 19 7 -0.9283 -3.8957 0.7691 20 6 -3.6631 -5.6992 2.3502 21 6 -3.7231 -6.3819 3.7155 22 6 -3.4353 -5.3351 4.7979 23 6 -1.9632 -4.9352 4.7047 24 1 -0.4849 -0.8361 0.0816 25 1 2.3790 -3.3430 -1.5276 26 1 2.9924 -3.7690 0.0881 27 1 0.1927 -3.5413 3.8817 28 1 -4.5095 -5.0196 2.2497 29 1 -3.7168 -6.4550 1.5667 30 1 -2.9743 -7.1726 3.7627 31 1 -4.7146 -6.8071 3.8720 32 1 -3.6382 -5.7594 5.7813 33 1 -4.0635 -4.4583 4.6404 34 1 -1.3418 -5.7711 5.0263 35 1 -1.7795 -4.0814 5.3568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226557828.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:22 Heat of formation + Delta-G solvation = -16.890810 kcal Electronic energy + Delta-G solvation = -20174.651626 eV Core-core repulsion = 17005.294951 eV Total energy + Delta-G solvation = -3169.356675 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.80160 -38.15436 -36.57920 -35.05614 -33.59175 -32.73240 -30.94195 -30.16225 -28.82479 -24.94412 -24.81442 -23.35666 -22.79202 -21.37994 -19.93203 -18.04798 -17.04335 -16.56170 -15.66423 -15.24077 -14.92514 -14.16805 -13.99307 -13.97524 -13.88648 -13.56900 -13.15384 -12.87208 -12.55745 -12.20184 -12.18514 -11.83343 -11.44195 -11.31501 -11.00702 -10.96773 -10.90438 -10.46304 -10.31127 -10.25280 -9.74627 -9.53151 -9.28005 -9.13518 -8.88853 -8.57757 -7.90957 -6.75807 -4.60454 1.31600 1.67306 3.07708 3.26599 3.32893 3.48246 3.87345 4.15598 4.29510 4.53229 4.65050 4.78699 4.81562 4.87652 5.08961 5.29483 5.34002 5.46178 5.49354 5.58323 5.66407 5.75485 5.84598 5.85710 5.88833 5.91727 6.00908 6.19253 6.20423 6.28583 6.54029 6.69329 6.86875 7.56972 8.02443 8.31549 8.43834 9.21206 9.41790 10.61431 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.005557 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.632462 B = 5037.645173 C = 5801.084671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.036 3.964 3 Si 1.079 2.921 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.598 4.598 8 H 0.065 0.935 9 C 0.178 3.822 10 H 0.072 0.928 11 C -0.029 4.029 12 Cl -0.208 7.208 13 O -0.301 6.301 14 C 0.278 3.722 15 C -0.161 4.161 16 C -0.052 4.052 17 C 0.012 3.988 18 N -0.206 5.206 19 N -0.273 5.273 20 C -0.054 4.054 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.078 4.078 24 H 0.278 0.722 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -9.647 8.263 13.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.175 4.175 3 Si 0.905 3.095 4 H -0.208 1.208 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.634 4.634 8 H 0.083 0.917 9 C 0.125 3.875 10 H 0.089 0.911 11 C -0.092 4.092 12 Cl -0.182 7.182 13 O -0.205 6.205 14 C 0.095 3.905 15 C -0.192 4.192 16 C -0.062 4.062 17 C -0.134 4.134 18 N -0.052 5.052 19 N -0.133 5.133 20 C -0.092 4.092 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.115 4.115 24 H 0.090 0.910 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.161 0.839 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.100 0.900 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.312 -7.986 6.708 11.286 hybrid contribution 0.640 -1.704 1.469 2.339 sum -3.672 -9.690 8.177 13.200 Atomic orbital electron populations 1.70728 1.07084 1.32089 1.40783 1.26212 0.96299 1.03334 0.91628 0.83409 0.74742 0.74034 0.77299 1.20759 1.20542 1.20876 1.21911 0.95240 0.89871 1.56389 0.91665 1.20759 0.97420 0.91615 0.77699 0.91052 1.25118 0.96212 0.83947 1.03898 1.98683 1.77000 1.43239 1.99260 1.86866 1.34654 1.63710 1.35292 1.21819 0.89168 0.88603 0.90882 1.21522 0.98748 1.02381 0.96538 1.20290 0.93541 0.95605 0.96778 1.22167 0.98937 1.01876 0.90373 1.72801 1.06980 1.05302 1.20115 1.73158 1.00635 1.11176 1.28284 1.20098 0.92911 0.98393 0.97847 1.21563 1.02015 0.97945 0.94114 1.21572 0.95654 0.99449 0.99042 1.20418 0.97270 1.02009 0.91832 0.90966 0.88419 0.90020 0.83856 0.90264 0.90052 0.91593 0.91005 0.91184 0.91341 0.90033 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.69 13.62 55.43 0.76 -24.93 16 2 C 0.04 0.97 5.46 -17.82 -0.10 0.87 16 3 Si 1.08 23.67 29.91 -169.99 -5.08 18.58 16 4 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.60 -16.00 8.69 -34.44 -0.30 -16.30 16 8 H 0.07 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.18 4.50 1.96 -27.88 -0.05 4.44 16 10 H 0.07 1.98 5.57 -51.93 -0.29 1.69 16 11 C -0.03 -0.62 6.31 37.16 0.23 -0.38 16 12 Cl -0.21 -4.36 25.96 -51.86 -1.35 -5.71 16 13 O -0.30 -7.52 9.75 -18.79 -0.18 -7.71 16 14 C 0.28 6.33 6.74 -16.99 -0.11 6.21 16 15 C -0.16 -3.03 9.79 -38.97 -0.38 -3.41 16 16 C -0.05 -0.83 5.74 -104.65 -0.60 -1.43 16 17 C 0.01 0.20 6.69 -82.44 -0.55 -0.35 16 18 N -0.21 -4.32 11.37 33.54 0.38 -3.94 16 19 N -0.27 -6.34 7.58 30.48 0.23 -6.11 16 20 C -0.05 -0.68 5.95 -28.06 -0.17 -0.84 16 21 C -0.12 -1.14 5.96 -26.69 -0.16 -1.29 16 22 C -0.12 -1.12 5.98 -26.66 -0.16 -1.28 16 23 C -0.08 -0.88 5.72 -28.18 -0.16 -1.04 16 24 H 0.28 8.41 6.67 -40.82 -0.27 8.14 16 25 H 0.10 1.97 8.14 -51.93 -0.42 1.54 16 26 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 27 H 0.14 2.36 8.06 -52.48 -0.42 1.94 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 303.92 15.07 4.58 4.58 Total: -1.00 -30.79 303.92 -7.59 -38.38 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.41 Total: 1.67 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.51 Total: -14.81 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 1.37 Total: -34.99 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -0.18 Total: -7.71 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.58 kcal Atomic # 17 Polarization: -4.36 SS G_CDS: -1.35 Total: -5.71 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.79 -7.59 -38.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226557828.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.490 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds