Wall clock time and date at job start Tue Mar 31 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48497 * 109.47158 * 269.72678 * 3 2 1 5 5 H 1.48498 * 109.47316 * 29.73116 * 3 2 1 6 6 H 1.48508 * 109.47018 * 149.72586 * 3 2 1 7 7 C 1.37874 * 119.99763 * 179.72955 * 2 1 3 8 8 H 1.08006 * 120.00052 * 175.99609 * 7 2 1 9 9 C 1.50706 * 120.00269 * 355.99100 * 7 2 1 10 10 H 1.08998 * 109.46614 * 35.12973 * 9 7 2 11 11 C 1.53000 * 109.46906 * 155.12852 * 9 7 2 12 12 Cl 1.80306 * 109.46863 * 185.72076 * 11 9 7 13 13 O 1.42897 * 109.47135 * 275.12983 * 9 7 2 14 14 C 1.35696 * 116.99515 * 149.99515 * 13 9 7 15 15 C 1.39165 * 120.27042 * 179.72015 * 14 13 9 16 16 C 1.38962 * 118.07461 * 179.75066 * 15 14 13 17 17 C 1.38000 * 118.29696 * 0.29365 * 16 15 14 18 18 N 1.32510 * 119.44180 * 0.09321 * 17 16 15 19 19 N 1.28094 * 122.65475 * 359.73162 * 18 17 16 20 20 C 1.50585 * 122.30059 * 180.47209 * 17 16 15 21 21 C 1.52768 * 110.47760 * 342.03389 * 20 17 16 22 22 C 1.53304 * 108.56604 * 51.26831 * 21 20 17 23 23 C 1.50275 * 118.72203 * 179.97438 * 16 15 14 24 24 H 0.96995 * 119.99666 * 185.57690 * 1 2 3 25 25 H 1.08995 * 109.47136 * 305.72021 * 11 9 7 26 26 H 1.08999 * 109.47102 * 65.72265 * 11 9 7 27 27 H 1.08005 * 120.96533 * 359.97438 * 15 14 13 28 28 H 1.09004 * 109.29900 * 102.34357 * 20 17 16 29 29 H 1.08996 * 109.30516 * 221.72189 * 20 17 16 30 30 H 1.08996 * 109.62530 * 291.54046 * 21 20 17 31 31 H 1.09004 * 109.77333 * 171.07882 * 21 20 17 32 32 H 1.09006 * 109.64555 * 170.47181 * 22 21 20 33 33 H 1.09006 * 109.81869 * 49.94220 * 22 21 20 34 34 H 1.09005 * 109.30649 * 283.04969 * 23 16 15 35 35 H 1.08998 * 109.30946 * 42.45612 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5025 2.0431 -1.4000 5 1 1.4439 2.6543 0.6943 6 1 3.5439 1.4418 0.7059 7 6 2.0045 -1.1940 0.0056 8 1 3.0826 -1.1955 -0.0597 9 6 1.2538 -2.4972 0.1030 10 1 0.3100 -2.4138 -0.4359 11 6 2.0950 -3.6175 -0.5118 12 17 1.1319 -5.1414 -0.5480 13 8 0.9935 -2.7955 1.4761 14 6 -0.1286 -3.5076 1.7497 15 6 -0.4450 -3.8411 3.0632 16 6 -1.6078 -4.5668 3.2918 17 6 -2.3812 -4.9224 2.2056 18 7 -1.9968 -4.5673 0.9882 19 7 -0.9283 -3.8957 0.7691 20 6 -3.6631 -5.6992 2.3502 21 6 -3.7231 -6.3819 3.7155 22 6 -3.4353 -5.3351 4.7979 23 6 -1.9632 -4.9352 4.7047 24 1 -0.4849 -0.8361 0.0816 25 1 2.3790 -3.3430 -1.5276 26 1 2.9924 -3.7690 0.0881 27 1 0.1927 -3.5413 3.8817 28 1 -4.5095 -5.0196 2.2497 29 1 -3.7168 -6.4550 1.5667 30 1 -2.9743 -7.1726 3.7627 31 1 -4.7146 -6.8071 3.8720 32 1 -3.6382 -5.7594 5.7813 33 1 -4.0635 -4.4583 4.6404 34 1 -1.3418 -5.7711 5.0263 35 1 -1.7795 -4.0814 5.3568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226557828.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:22 Heat of formation + Delta-G solvation = -36.463436 kcal Electronic energy + Delta-G solvation = -20175.500358 eV Core-core repulsion = 17005.294951 eV Total energy + Delta-G solvation = -3170.205407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.27559 -39.79347 -37.81806 -36.77111 -35.49417 -34.14744 -32.23500 -31.85124 -30.19618 -26.82476 -26.22140 -24.74085 -24.03696 -23.05599 -21.00725 -19.84340 -18.84236 -18.08544 -17.06614 -16.76893 -16.17688 -15.93962 -15.68658 -15.19880 -15.11729 -14.87106 -14.59042 -14.13477 -13.93742 -13.89215 -13.65883 -13.30764 -12.93395 -12.74039 -12.60397 -12.30015 -11.94266 -11.84336 -11.77881 -11.45361 -11.42081 -11.25088 -11.03446 -10.69555 -10.60178 -10.29855 -9.57866 -8.90330 -6.75281 -0.13327 0.17684 1.34489 1.51144 1.59160 1.78586 2.19621 2.49978 2.63135 3.09165 3.26189 3.50999 3.60567 3.78403 3.84704 4.01693 4.02930 4.11195 4.26730 4.39976 4.42855 4.56037 4.59356 4.68528 4.79512 4.90219 4.97534 5.01333 5.13056 5.22122 5.31792 5.44682 5.44926 5.56780 5.90412 6.23413 6.52289 7.16322 7.87480 8.45875 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.020726 B = 0.005557 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.632462 B = 5037.645173 C = 5801.084671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.013 4.013 3 Si 1.127 2.873 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.612 4.612 8 H 0.073 0.927 9 C 0.182 3.818 10 H 0.038 0.962 11 C -0.023 4.023 12 Cl -0.202 7.202 13 O -0.320 6.320 14 C 0.246 3.754 15 C -0.170 4.170 16 C -0.039 4.039 17 C 0.018 3.982 18 N -0.244 5.244 19 N -0.307 5.307 20 C -0.056 4.056 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.078 4.078 24 H 0.259 0.741 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.163 0.837 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.376 -10.762 10.534 15.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.215 4.215 3 Si 0.946 3.054 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.649 4.649 8 H 0.091 0.909 9 C 0.128 3.872 10 H 0.055 0.945 11 C -0.085 4.085 12 Cl -0.176 7.176 13 O -0.226 6.226 14 C 0.062 3.938 15 C -0.200 4.200 16 C -0.050 4.050 17 C -0.129 4.129 18 N -0.089 5.089 19 N -0.165 5.165 20 C -0.095 4.095 21 C -0.150 4.150 22 C -0.154 4.154 23 C -0.115 4.115 24 H 0.069 0.931 25 H 0.126 0.874 26 H 0.114 0.886 27 H 0.181 0.819 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.636 -9.140 8.958 13.612 hybrid contribution 0.599 -1.546 0.857 1.866 sum -4.037 -10.686 9.815 15.060 Atomic orbital electron populations 1.70864 1.08330 1.30853 1.44214 1.27751 0.96180 1.07188 0.90380 0.82843 0.74205 0.69941 0.78411 1.18892 1.20932 1.18664 1.22264 0.95749 0.90824 1.56019 0.90881 1.20513 0.96191 0.92673 0.77845 0.94451 1.24971 0.95827 0.83335 1.04407 1.98678 1.77075 1.42532 1.99270 1.86687 1.36222 1.65354 1.34324 1.22063 0.89042 0.90089 0.92596 1.21877 1.00103 1.02638 0.95395 1.20892 0.91636 0.93175 0.99277 1.23028 1.00068 1.00279 0.89534 1.72722 1.06965 1.06589 1.22580 1.73041 1.01655 1.12356 1.29405 1.20332 0.90525 0.98269 1.00376 1.21592 1.03927 0.97739 0.91752 1.21621 0.93775 0.99372 1.00654 1.20631 0.99260 1.03373 0.88245 0.93066 0.87367 0.88644 0.81902 0.89403 0.89908 0.91268 0.88087 0.87883 0.91761 0.87815 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.66 13.62 21.45 0.29 -55.37 16 2 C -0.01 -0.70 5.46 84.65 0.46 -0.24 16 3 Si 1.13 47.75 29.91 68.60 2.05 49.80 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 7 C -0.61 -33.52 8.69 25.60 0.22 -33.30 16 8 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 9 C 0.18 9.53 1.96 29.85 0.06 9.59 16 10 H 0.04 2.22 5.57 -2.39 -0.01 2.20 16 11 C -0.02 -0.99 6.31 71.98 0.45 -0.53 16 12 Cl -0.20 -8.63 25.96 -2.72 -0.07 -8.70 16 13 O -0.32 -16.64 9.75 -90.15 -0.88 -17.52 16 14 C 0.25 11.57 6.74 84.84 0.57 12.14 16 15 C -0.17 -6.37 9.79 22.67 0.22 -6.15 16 16 C -0.04 -1.20 5.74 -19.88 -0.11 -1.31 16 17 C 0.02 0.59 6.69 42.36 0.28 0.87 16 18 N -0.24 -10.53 11.37 -47.80 -0.54 -11.07 16 19 N -0.31 -14.89 7.58 -170.28 -1.29 -16.18 16 20 C -0.06 -1.30 5.95 29.73 0.18 -1.12 16 21 C -0.11 -1.68 5.96 30.62 0.18 -1.50 16 22 C -0.12 -1.65 5.98 30.64 0.18 -1.47 16 23 C -0.08 -1.46 5.72 29.66 0.17 -1.29 16 24 H 0.26 16.64 6.67 -92.71 -0.62 16.02 16 25 H 0.11 4.42 8.14 -2.39 -0.02 4.40 16 26 H 0.10 3.87 8.14 -2.39 -0.02 3.85 16 27 H 0.16 5.23 8.06 -2.91 -0.02 5.21 16 28 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.10 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 1.00 8.11 -2.38 -0.02 0.98 16 34 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.26 303.92 3.68 -67.58 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.25 Total: 15.78 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 2.87 Total: -24.31 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -1.54 Total: -82.63 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.88 Total: -17.52 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.05 Total: 49.80 kcal Atomic # 17 Polarization: -8.63 SS G_CDS: -0.07 Total: -8.70 kcal Total: -71.26 3.68 -67.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226557828.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.115 kcal (2) G-P(sol) polarization free energy of solvation -71.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds