Wall clock time and date at job start Tue Mar 31 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20756 * 120.00313 * 2 1 4 4 C 1.50704 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.50698 * 109.46946 * 180.02562 * 4 2 1 6 6 C 1.38262 * 119.94829 * 89.99918 * 5 4 2 7 7 C 1.38141 * 120.06092 * 179.97438 * 6 5 4 8 8 C 1.38734 * 119.93991 * 0.24880 * 7 6 5 9 9 O 1.35905 * 120.05472 * 179.74458 * 8 7 6 10 10 C 1.42905 * 116.99686 * 355.96219 * 9 8 7 11 11 H 1.08990 * 109.47494 * 27.93823 * 10 9 8 12 12 C 1.50697 * 109.47154 * 147.94282 * 10 9 8 13 13 H 1.08004 * 120.00179 * 5.07397 * 12 10 9 14 14 C 1.37878 * 120.00288 * 185.08197 * 12 10 9 15 15 N 1.31513 * 119.99777 * 5.52423 * 14 12 10 16 16 Si 1.86800 * 120.00071 * 185.52379 * 14 12 10 17 17 H 1.48502 * 109.46921 * 94.99940 * 16 14 12 18 18 H 1.48499 * 109.47048 * 214.99641 * 16 14 12 19 19 H 1.48500 * 109.47204 * 334.99872 * 16 14 12 20 20 C 1.53001 * 109.46623 * 267.93535 * 10 9 8 21 21 Cl 1.80305 * 109.46924 * 65.64024 * 20 10 9 22 22 C 1.38727 * 119.89253 * 359.47621 * 8 7 6 23 23 C 1.38153 * 119.94131 * 0.54751 * 22 8 7 24 24 H 1.09000 * 109.47604 * 269.99696 * 1 2 3 25 25 H 1.09002 * 109.47215 * 30.00072 * 1 2 3 26 26 H 1.09008 * 109.47380 * 149.99931 * 1 2 3 27 27 H 1.09003 * 109.47397 * 60.00228 * 4 2 1 28 28 H 1.08998 * 109.46994 * 299.99970 * 4 2 1 29 29 H 1.08004 * 119.97168 * 359.95934 * 6 5 4 30 30 H 1.08005 * 120.02920 * 179.97438 * 7 6 5 31 31 H 0.96998 * 119.99626 * 179.97438 * 15 14 12 32 32 H 1.09010 * 109.46998 * 185.63400 * 20 10 9 33 33 H 1.08993 * 109.47519 * 305.63660 * 20 10 9 34 34 H 1.08001 * 120.03426 * 180.24291 * 22 8 7 35 35 H 1.07999 * 119.96973 * 179.72263 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 -0.0006 5 6 3.7421 -1.0298 0.0002 6 6 4.4202 -0.9044 1.1985 7 6 5.7784 -0.6525 1.2019 8 6 6.4611 -0.5202 0.0015 9 8 7.7964 -0.2672 0.0021 10 6 8.4171 -0.0615 1.2728 11 1 7.8641 -0.6042 2.0394 12 6 9.8366 -0.5651 1.2259 13 1 10.2521 -0.9233 0.2955 14 6 10.6050 -0.5690 2.3707 15 7 10.0680 -0.2363 3.5242 16 14 12.4088 -1.0466 2.2833 17 1 13.2394 0.1777 2.1553 18 1 12.7884 -1.7751 3.5204 19 1 12.6325 -1.9221 1.1049 20 6 8.4166 1.4321 1.6047 21 17 6.7189 1.9985 1.8240 22 6 5.7796 -0.6520 -1.1996 23 6 4.4211 -0.9035 -1.1976 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.9972 -1.8764 -0.8909 28 1 1.9971 -1.8771 0.8891 29 1 3.8875 -1.0033 2.1328 30 1 6.3076 -0.5543 2.1384 31 1 10.6085 -0.2394 4.3296 32 1 8.9773 1.6001 2.5243 33 1 8.8819 1.9857 0.7892 34 1 6.3095 -0.5533 -2.1355 35 1 3.8893 -1.0017 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226847607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:01 Heat of formation + Delta-G solvation = -70.260262 kcal Electronic energy + Delta-G solvation = -19580.319854 eV Core-core repulsion = 16376.356155 eV Total energy + Delta-G solvation = -3203.963699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81949 -38.95382 -36.88218 -34.82213 -33.45423 -32.11664 -30.55835 -30.12952 -29.26880 -26.19213 -25.26558 -22.86455 -21.63045 -20.34616 -19.41666 -17.47989 -16.78938 -15.73298 -15.58832 -15.54550 -14.98207 -14.52830 -14.42792 -14.12153 -13.66943 -13.34642 -12.94227 -12.68504 -12.55954 -12.43955 -12.15562 -12.01852 -11.68859 -11.40564 -11.19425 -11.09331 -10.98278 -10.66733 -10.50733 -10.12713 -9.68535 -9.53660 -9.35674 -9.14310 -8.65044 -8.32723 -7.22361 -6.42422 -4.48920 1.97051 2.01834 2.02694 3.13047 3.21614 3.25698 3.40234 4.03606 4.07678 4.45471 4.52245 4.89378 4.93806 5.01320 5.06505 5.27535 5.39404 5.47051 5.58914 5.59412 5.85314 5.92596 6.08325 6.13254 6.28287 6.35094 6.58503 6.66874 6.89089 6.98517 7.07994 7.20021 7.43536 7.56807 7.59375 7.77791 8.38233 8.72113 9.18528 10.65747 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.031470 B = 0.004325 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.530055 B = 6472.377346 C = 6822.530281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.346 3.654 3 O -0.442 6.442 4 C -0.120 4.120 5 C -0.140 4.140 6 C -0.072 4.072 7 C -0.188 4.188 8 C 0.159 3.841 9 O -0.312 6.312 10 C 0.204 3.796 11 H 0.057 0.943 12 C -0.523 4.523 13 H 0.076 0.924 14 C 0.065 3.935 15 N -0.885 5.885 16 Si 0.913 3.087 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.033 4.033 21 Cl -0.232 7.232 22 C -0.168 4.168 23 C -0.077 4.077 24 H 0.092 0.908 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.137 0.863 31 H 0.271 0.729 32 H 0.117 0.883 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.153 -2.453 -4.678 15.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.220 3.780 3 O -0.314 6.314 4 C -0.157 4.157 5 C -0.140 4.140 6 C -0.091 4.091 7 C -0.206 4.206 8 C 0.112 3.888 9 O -0.225 6.225 10 C 0.149 3.851 11 H 0.074 0.926 12 C -0.561 4.561 13 H 0.094 0.906 14 C -0.139 4.139 15 N -0.522 5.522 16 Si 0.740 3.260 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.096 4.096 21 Cl -0.206 7.206 22 C -0.187 4.187 23 C -0.095 4.095 24 H 0.110 0.890 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.747 -1.801 -4.613 14.611 hybrid contribution 0.761 -0.135 0.394 0.868 sum -12.985 -1.936 -4.218 13.790 Atomic orbital electron populations 1.22306 0.94947 1.04428 1.04415 1.24693 0.91417 0.90699 0.71221 1.90473 1.71823 1.34942 1.34142 1.21017 0.93072 0.97108 1.04547 1.19072 0.93602 1.07664 0.93667 1.20609 0.93777 0.98030 0.96645 1.21459 0.95192 1.05374 0.98592 1.19130 0.84478 0.91697 0.93471 1.86125 1.17131 1.83452 1.35822 1.20507 0.93974 0.90389 0.80260 0.92567 1.20992 0.95048 1.43424 0.96634 0.90609 1.24993 0.99816 0.94484 0.94600 1.69919 1.36673 1.46858 0.98732 0.86213 0.82966 0.78825 0.78024 1.20206 1.20782 1.19341 1.25634 0.80113 0.98856 1.04987 1.98664 1.31955 1.91662 1.98309 1.20287 0.93981 1.08138 0.96320 1.20522 0.93306 0.98941 0.96713 0.88952 0.90016 0.89880 0.88214 0.88174 0.87072 0.84511 0.91917 0.86438 0.90569 0.86035 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 10.25 36.00 0.37 -1.12 16 2 C 0.35 4.05 7.26 -29.04 -0.21 3.84 16 3 O -0.44 -7.51 16.77 6.00 0.10 -7.41 16 4 C -0.12 -1.29 5.75 -29.03 -0.17 -1.45 16 5 C -0.14 -2.17 4.38 -104.60 -0.46 -2.63 16 6 C -0.07 -1.27 9.69 -39.61 -0.38 -1.65 16 7 C -0.19 -3.84 6.98 -39.43 -0.28 -4.11 16 8 C 0.16 3.41 5.96 -39.22 -0.23 3.18 16 9 O -0.31 -7.47 9.74 -19.44 -0.19 -7.66 16 10 C 0.20 5.05 2.07 -27.88 -0.06 5.00 16 11 H 0.06 1.48 5.41 -51.93 -0.28 1.20 16 12 C -0.52 -13.81 8.82 -34.44 -0.30 -14.12 16 13 H 0.08 2.02 7.82 -52.48 -0.41 1.60 16 14 C 0.06 1.67 5.22 -17.82 -0.09 1.58 16 15 N -0.89 -23.38 11.95 55.43 0.66 -22.71 16 16 Si 0.91 20.02 29.54 -169.99 -5.02 15.00 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 C -0.03 -0.77 6.22 37.16 0.23 -0.54 16 21 Cl -0.23 -5.05 25.50 -51.86 -1.32 -6.38 16 22 C -0.17 -3.14 9.99 -39.43 -0.39 -3.54 16 23 C -0.08 -1.23 9.69 -39.60 -0.38 -1.62 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.40 8.12 -51.92 -0.42 -0.02 16 27 H 0.10 0.81 8.08 -51.93 -0.42 0.39 16 28 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 30 H 0.14 3.00 5.08 -52.48 -0.27 2.74 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 32 H 0.12 2.88 6.60 -51.92 -0.34 2.54 16 33 H 0.08 1.72 8.14 -51.93 -0.42 1.29 16 34 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -29.80 313.22 -7.64 -37.44 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -4.23 Total: 4.18 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -2.36 Total: -17.17 kcal Atomic # 7 Polarization: -23.38 SS G_CDS: 0.66 Total: -22.71 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.09 Total: -15.07 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 17 Polarization: -5.05 SS G_CDS: -1.32 Total: -6.38 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.80 -7.64 -37.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226847607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.819 kcal (2) G-P(sol) polarization free energy of solvation -29.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds