Wall clock time and date at job start Tue Mar 31 2020 05:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20756 * 120.00313 * 2 1 4 4 C 1.50704 * 119.99864 * 180.02562 * 2 1 3 5 5 C 1.50698 * 109.46946 * 180.02562 * 4 2 1 6 6 C 1.38262 * 119.94829 * 89.99918 * 5 4 2 7 7 C 1.38141 * 120.06092 * 179.97438 * 6 5 4 8 8 C 1.38734 * 119.93991 * 0.24880 * 7 6 5 9 9 O 1.35905 * 120.05472 * 179.74458 * 8 7 6 10 10 C 1.42905 * 116.99686 * 355.96219 * 9 8 7 11 11 H 1.08990 * 109.47494 * 27.93823 * 10 9 8 12 12 C 1.50697 * 109.47154 * 147.94282 * 10 9 8 13 13 H 1.08004 * 120.00179 * 5.07397 * 12 10 9 14 14 C 1.37878 * 120.00288 * 185.08197 * 12 10 9 15 15 N 1.31513 * 119.99777 * 5.52423 * 14 12 10 16 16 Si 1.86800 * 120.00071 * 185.52379 * 14 12 10 17 17 H 1.48502 * 109.46921 * 94.99940 * 16 14 12 18 18 H 1.48499 * 109.47048 * 214.99641 * 16 14 12 19 19 H 1.48500 * 109.47204 * 334.99872 * 16 14 12 20 20 C 1.53001 * 109.46623 * 267.93535 * 10 9 8 21 21 Cl 1.80305 * 109.46924 * 65.64024 * 20 10 9 22 22 C 1.38727 * 119.89253 * 359.47621 * 8 7 6 23 23 C 1.38153 * 119.94131 * 0.54751 * 22 8 7 24 24 H 1.09000 * 109.47604 * 269.99696 * 1 2 3 25 25 H 1.09002 * 109.47215 * 30.00072 * 1 2 3 26 26 H 1.09008 * 109.47380 * 149.99931 * 1 2 3 27 27 H 1.09003 * 109.47397 * 60.00228 * 4 2 1 28 28 H 1.08998 * 109.46994 * 299.99970 * 4 2 1 29 29 H 1.08004 * 119.97168 * 359.95934 * 6 5 4 30 30 H 1.08005 * 120.02920 * 179.97438 * 7 6 5 31 31 H 0.96998 * 119.99626 * 179.97438 * 15 14 12 32 32 H 1.09010 * 109.46998 * 185.63400 * 20 10 9 33 33 H 1.08993 * 109.47519 * 305.63660 * 20 10 9 34 34 H 1.08001 * 120.03426 * 180.24291 * 22 8 7 35 35 H 1.07999 * 119.96973 * 179.72263 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 -0.0006 5 6 3.7421 -1.0298 0.0002 6 6 4.4202 -0.9044 1.1985 7 6 5.7784 -0.6525 1.2019 8 6 6.4611 -0.5202 0.0015 9 8 7.7964 -0.2672 0.0021 10 6 8.4171 -0.0615 1.2728 11 1 7.8641 -0.6042 2.0394 12 6 9.8366 -0.5651 1.2259 13 1 10.2521 -0.9233 0.2955 14 6 10.6050 -0.5690 2.3707 15 7 10.0680 -0.2363 3.5242 16 14 12.4088 -1.0466 2.2833 17 1 13.2394 0.1777 2.1553 18 1 12.7884 -1.7751 3.5204 19 1 12.6325 -1.9221 1.1049 20 6 8.4166 1.4321 1.6047 21 17 6.7189 1.9985 1.8240 22 6 5.7796 -0.6520 -1.1996 23 6 4.4211 -0.9035 -1.1976 24 1 -0.3634 -0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3634 -0.8900 -0.5139 27 1 1.9972 -1.8764 -0.8909 28 1 1.9971 -1.8771 0.8891 29 1 3.8875 -1.0033 2.1328 30 1 6.3076 -0.5543 2.1384 31 1 10.6085 -0.2394 4.3296 32 1 8.9773 1.6001 2.5243 33 1 8.8819 1.9857 0.7892 34 1 6.3095 -0.5533 -2.1355 35 1 3.8893 -1.0017 -2.1324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226847607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:01 Heat of formation + Delta-G solvation = -86.810349 kcal Electronic energy + Delta-G solvation = -19581.037520 eV Core-core repulsion = 16376.356155 eV Total energy + Delta-G solvation = -3204.681364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13877 -40.24063 -38.38747 -36.63961 -35.36490 -33.30462 -32.02096 -31.38381 -30.70202 -27.42527 -27.16399 -24.46441 -23.09972 -21.86313 -20.40345 -19.17887 -18.65072 -17.15007 -16.72043 -16.62283 -16.41886 -16.13222 -15.88829 -15.56756 -14.98513 -14.97927 -14.34467 -14.24249 -14.01574 -13.68807 -13.30450 -13.05590 -13.01272 -12.99314 -12.78249 -12.65164 -12.39484 -12.31270 -12.14495 -11.78564 -11.40724 -11.18296 -11.01381 -10.59626 -10.51997 -9.75538 -8.74676 -8.39411 -6.54949 0.54735 0.61586 1.16252 1.37496 1.41691 1.52399 1.56078 2.27065 2.73683 2.89056 2.95034 3.47049 3.87685 3.98964 4.07725 4.26038 4.34355 4.37881 4.43510 4.52759 4.60213 4.75198 4.75724 4.85621 4.89273 4.97149 5.13513 5.20914 5.27964 5.48353 5.51568 5.63138 5.72502 5.84057 6.05451 6.48541 6.74962 6.85897 7.18092 8.68507 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.031470 B = 0.004325 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.530055 B = 6472.377346 C = 6822.530281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.350 3.650 3 O -0.507 6.507 4 C -0.122 4.122 5 C -0.128 4.128 6 C -0.083 4.083 7 C -0.203 4.203 8 C 0.118 3.882 9 O -0.333 6.333 10 C 0.211 3.789 11 H 0.034 0.966 12 C -0.551 4.551 13 H 0.066 0.934 14 C 0.027 3.973 15 N -0.909 5.909 16 Si 0.978 3.022 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.268 1.268 20 C -0.023 4.023 21 Cl -0.218 7.218 22 C -0.177 4.177 23 C -0.076 4.076 24 H 0.108 0.892 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.275 0.725 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.350 -3.560 -5.524 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.229 3.771 3 O -0.384 6.384 4 C -0.158 4.158 5 C -0.128 4.128 6 C -0.101 4.101 7 C -0.222 4.222 8 C 0.073 3.927 9 O -0.247 6.247 10 C 0.156 3.844 11 H 0.052 0.948 12 C -0.588 4.588 13 H 0.084 0.916 14 C -0.175 4.175 15 N -0.545 5.545 16 Si 0.801 3.199 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.192 1.192 20 C -0.086 4.086 21 Cl -0.192 7.192 22 C -0.195 4.195 23 C -0.093 4.093 24 H 0.126 0.874 25 H 0.096 0.904 26 H 0.136 0.864 27 H 0.157 0.843 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.148 0.852 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.984 -2.926 -5.463 17.143 hybrid contribution 1.231 0.160 0.631 1.393 sum -14.753 -2.765 -4.831 15.768 Atomic orbital electron populations 1.22303 0.91180 1.05978 1.05821 1.25344 0.93481 0.89777 0.68544 1.90482 1.73354 1.36982 1.37612 1.21244 0.89099 0.97591 1.07904 1.19655 0.96446 1.04266 0.92475 1.20927 0.92730 0.97815 0.98666 1.21344 0.96559 1.07054 0.97257 1.19470 0.83638 0.94637 0.94982 1.86049 1.18972 1.84684 1.34985 1.20230 0.93166 0.90681 0.80365 0.94812 1.21218 0.96231 1.44657 0.96709 0.91616 1.25770 1.03724 0.94006 0.93965 1.70006 1.38170 1.47079 0.99269 0.85235 0.77854 0.78746 0.78075 1.19286 1.20042 1.19232 1.25322 0.80755 0.98332 1.04160 1.98655 1.30820 1.91437 1.98279 1.20597 0.95334 1.07938 0.95657 1.21012 0.92280 0.97333 0.98722 0.87392 0.90435 0.86397 0.84288 0.85246 0.85219 0.87096 0.91526 0.87892 0.90271 0.85227 0.82928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 10.25 71.23 0.73 -1.29 16 2 C 0.35 7.04 7.26 29.10 0.21 7.25 16 3 O -0.51 -16.58 16.77 -1.44 -0.02 -16.60 16 4 C -0.12 -2.05 5.75 29.10 0.17 -1.89 16 5 C -0.13 -3.67 4.38 -19.85 -0.09 -3.76 16 6 C -0.08 -2.87 9.69 22.25 0.22 -2.65 16 7 C -0.20 -8.63 6.98 22.37 0.16 -8.47 16 8 C 0.12 5.25 5.96 22.51 0.13 5.39 16 9 O -0.33 -16.75 9.74 -92.48 -0.90 -17.65 16 10 C 0.21 11.03 2.07 29.85 0.06 11.09 16 11 H 0.03 1.91 5.41 -2.39 -0.01 1.90 16 12 C -0.55 -30.24 8.82 25.60 0.23 -30.02 16 13 H 0.07 3.64 7.82 -2.91 -0.02 3.62 16 14 C 0.03 1.42 5.22 84.65 0.44 1.86 16 15 N -0.91 -49.19 11.95 21.45 0.26 -48.93 16 16 Si 0.98 41.41 29.54 68.60 2.03 43.44 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 19 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 20 C -0.02 -1.10 6.22 71.98 0.45 -0.65 16 21 Cl -0.22 -9.81 25.50 -2.72 -0.07 -9.88 16 22 C -0.18 -6.57 9.99 22.37 0.22 -6.34 16 23 C -0.08 -2.26 9.69 22.26 0.22 -2.05 16 24 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.12 0.43 8.12 -2.38 -0.02 0.41 16 27 H 0.14 1.36 8.08 -2.39 -0.02 1.34 16 28 H 0.13 1.53 8.08 -2.39 -0.02 1.51 16 29 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 30 H 0.11 5.21 5.08 -2.91 -0.01 5.20 16 31 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 32 H 0.10 5.28 6.60 -2.38 -0.02 5.27 16 33 H 0.08 3.72 8.14 -2.39 -0.02 3.70 16 34 H 0.13 4.45 8.06 -2.91 -0.02 4.43 16 35 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -68.57 313.22 5.53 -63.03 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 1.10 Total: 18.12 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 3.14 Total: -31.53 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.26 Total: -48.93 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.92 Total: -34.25 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 17 Polarization: -9.81 SS G_CDS: -0.07 Total: -9.88 kcal Total: -68.57 5.53 -63.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226847607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.776 kcal (2) G-P(sol) polarization free energy of solvation -68.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds