Wall clock time and date at job start Tue Mar 31 2020 05:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99947 * 2 1 4 4 C 1.50696 * 109.47093 * 125.00194 * 3 2 1 5 5 C 1.38258 * 119.92780 * 270.02207 * 4 3 2 6 6 C 1.38241 * 120.14635 * 179.97438 * 5 4 3 7 7 C 1.38565 * 120.00019 * 359.73089 * 6 5 4 8 8 O 1.35998 * 120.07689 * 180.27288 * 7 6 5 9 9 C 1.39158 * 119.85298 * 0.54508 * 7 6 5 10 10 O 1.35993 * 120.07229 * 179.72622 * 9 7 6 11 11 C 1.42904 * 116.99506 * 185.37383 * 10 9 7 12 12 H 1.08996 * 109.47309 * 21.05952 * 11 10 9 13 13 C 1.50704 * 109.46886 * 141.06167 * 11 10 9 14 14 H 1.08002 * 119.99863 * 34.97624 * 13 11 10 15 15 C 1.37874 * 119.99721 * 214.97939 * 13 11 10 16 16 N 1.31520 * 119.99877 * 184.74412 * 15 13 11 17 17 Si 1.86802 * 120.00387 * 4.73920 * 15 13 11 18 18 H 1.48493 * 109.46865 * 84.88442 * 17 15 13 19 19 H 1.48499 * 109.47063 * 204.88969 * 17 15 13 20 20 H 1.48499 * 109.46595 * 324.88961 * 17 15 13 21 21 C 1.52999 * 109.46974 * 261.05606 * 11 10 9 22 22 Cl 1.80303 * 109.46992 * 64.63513 * 21 11 10 23 23 C 1.38241 * 119.92974 * 90.00183 * 4 3 2 24 24 H 1.08004 * 120.00005 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00648 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00285 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46713 * 5.00414 * 3 2 1 28 28 H 1.09000 * 109.47455 * 245.00192 * 3 2 1 29 29 H 1.08000 * 119.92615 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.99747 * 180.02562 * 6 5 4 31 31 H 0.96701 * 113.99547 * 270.27587 * 8 7 6 32 32 H 0.96994 * 120.00100 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.47255 * 184.63444 * 21 11 10 34 34 H 1.09000 * 109.47594 * 304.63268 * 21 11 10 35 35 H 1.08002 * 119.99639 * 0.04804 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3326 1.1638 5 6 2.6083 1.8356 2.3839 6 6 3.4822 1.8625 3.4547 7 6 4.7727 1.3797 3.3081 8 8 5.6320 1.4003 4.3620 9 6 5.1893 0.8788 2.0784 10 8 6.4566 0.4089 1.9280 11 6 6.8522 0.0200 0.6110 12 1 6.2046 0.5033 -0.1205 13 6 8.2802 0.4380 0.3715 14 1 8.9935 0.4125 1.1821 15 6 8.6759 0.8529 -0.8824 16 7 9.9407 1.1284 -1.1151 17 14 7.4157 1.0238 -2.2507 18 1 6.7708 2.3587 -2.1657 19 1 8.0908 0.8829 -3.5658 20 1 6.3837 -0.0344 -2.1080 21 6 6.7352 -1.4991 0.4711 22 17 5.0055 -1.9851 0.6227 23 6 4.3083 0.8546 1.0093 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3584 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.6011 2.2074 2.5010 30 1 3.1576 2.2555 4.4069 31 1 6.1515 2.2131 4.4299 32 1 10.2190 1.4206 -1.9971 33 1 7.1142 -1.8044 -0.5042 34 1 7.3184 -1.9822 1.2550 35 1 4.6279 0.4627 0.0550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229338708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:13 Heat of formation + Delta-G solvation = -53.240307 kcal Electronic energy + Delta-G solvation = -20138.765615 eV Core-core repulsion = 16935.539957 eV Total energy + Delta-G solvation = -3203.225658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.95385 -37.52217 -36.79187 -35.18318 -34.34630 -33.25176 -30.74371 -30.33056 -29.06667 -25.81791 -25.40415 -23.03980 -21.38532 -20.44292 -19.76021 -18.40299 -17.19347 -16.84650 -15.79177 -15.26437 -15.15143 -14.70729 -14.39703 -14.03111 -13.72472 -13.56038 -13.37528 -12.94432 -12.86875 -12.35605 -12.07584 -11.81276 -11.63028 -11.43737 -11.18112 -11.12590 -10.88704 -10.64617 -10.20486 -10.12232 -9.84573 -9.59291 -9.42123 -9.29632 -8.94893 -8.28267 -7.44811 -6.50606 -4.58106 1.54481 1.84588 2.32407 2.91910 3.05228 3.08487 3.12236 3.98105 4.01180 4.02725 4.65152 4.85000 4.93967 5.09552 5.15732 5.26331 5.47062 5.54262 5.67285 5.77179 5.84351 5.85677 5.95505 5.99717 6.15422 6.23454 6.47834 6.56050 6.62233 6.70556 6.76149 6.91259 7.09390 7.16285 7.79639 8.07015 8.38735 8.64036 9.06190 10.59997 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.007278 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.714247 B = 3846.370244 C = 4504.435304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 C -0.055 4.055 4 C -0.052 4.052 5 C -0.154 4.154 6 C -0.110 4.110 7 C 0.054 3.946 8 O -0.488 6.488 9 C 0.136 3.864 10 O -0.291 6.291 11 C 0.173 3.827 12 H 0.050 0.950 13 C -0.525 4.525 14 H 0.091 0.909 15 C 0.087 3.913 16 N -0.869 5.869 17 Si 0.860 3.140 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.259 1.259 21 C -0.036 4.036 22 Cl -0.228 7.228 23 C -0.187 4.187 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.381 0.619 32 H 0.274 0.726 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.853 0.763 2.171 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.152 4.152 3 C -0.092 4.092 4 C -0.053 4.053 5 C -0.173 4.173 6 C -0.128 4.128 7 C 0.009 3.991 8 O -0.296 6.296 9 C 0.088 3.912 10 O -0.204 6.204 11 C 0.118 3.882 12 H 0.068 0.932 13 C -0.562 4.562 14 H 0.109 0.891 15 C -0.119 4.119 16 N -0.504 5.504 17 Si 0.685 3.315 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.183 1.183 21 C -0.099 4.099 22 Cl -0.202 7.202 23 C -0.205 4.205 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.127 0.873 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.235 0.765 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.869 0.187 2.282 14.056 hybrid contribution -0.368 0.406 -1.090 1.220 sum -14.237 0.593 1.192 14.299 Atomic orbital electron populations 1.23762 0.95729 1.01560 1.03009 1.22907 0.95773 0.98368 0.98109 1.19760 0.96957 0.95744 0.96756 1.19440 0.93510 0.97554 0.94748 1.20579 0.99464 1.04828 0.92417 1.21057 0.92823 0.99921 0.99026 1.17757 0.90490 1.05195 0.85699 1.84871 1.55470 1.43621 1.45644 1.19578 0.85848 0.93025 0.92739 1.86359 1.24271 1.75816 1.33916 1.20882 0.97440 0.89350 0.80547 0.93219 1.20734 0.91521 1.46016 0.97892 0.89129 1.24959 0.95417 0.93435 0.98139 1.69835 1.15054 1.42240 1.23270 0.87096 0.82169 0.80252 0.82031 1.18976 1.20165 1.18302 1.25916 0.79395 0.99788 1.04765 1.98668 1.29064 1.93621 1.98883 1.21250 0.93901 1.05587 0.99782 0.88673 0.88727 0.87261 0.90577 0.90084 0.86377 0.85561 0.76475 0.91570 0.88415 0.88702 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 14.32 29.02 0.42 -1.78 16 2 C -0.13 -1.70 9.50 -36.03 -0.34 -2.04 16 3 C -0.06 -0.72 5.78 -29.04 -0.17 -0.89 16 4 C -0.05 -0.82 5.12 -104.62 -0.54 -1.36 16 5 C -0.15 -2.24 9.69 -39.57 -0.38 -2.62 16 6 C -0.11 -1.67 9.98 -39.46 -0.39 -2.06 16 7 C 0.05 0.98 6.72 -39.12 -0.26 0.71 16 8 O -0.49 -8.44 13.29 -34.24 -0.46 -8.89 16 9 C 0.14 2.75 6.23 -39.12 -0.24 2.51 16 10 O -0.29 -6.64 9.46 -34.22 -0.32 -6.96 16 11 C 0.17 3.95 1.80 -27.88 -0.05 3.90 16 12 H 0.05 1.13 2.61 -51.93 -0.14 0.99 16 13 C -0.52 -13.79 9.24 -34.44 -0.32 -14.11 16 14 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 15 C 0.09 2.29 5.47 -17.82 -0.10 2.20 16 16 N -0.87 -24.25 13.96 55.43 0.77 -23.47 16 17 Si 0.86 19.22 26.99 -169.99 -4.59 14.64 16 18 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.26 -5.45 6.82 56.52 0.39 -5.07 16 21 C -0.04 -0.73 6.32 37.16 0.23 -0.49 16 22 Cl -0.23 -4.28 25.78 -51.86 -1.34 -5.62 16 23 C -0.19 -3.47 6.90 -39.46 -0.27 -3.74 16 24 H 0.09 0.93 8.06 -52.48 -0.42 0.50 16 25 H 0.09 0.89 7.84 -52.49 -0.41 0.48 16 26 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.08 0.84 7.74 -51.93 -0.40 0.44 16 28 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 31 H 0.38 4.95 9.06 45.56 0.41 5.36 16 32 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 34 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 35 H 0.13 2.61 4.87 -52.49 -0.26 2.35 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -28.74 312.67 -6.96 -35.69 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.32 Total: 9.70 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.42 Total: -19.79 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 0.77 Total: -23.47 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.78 Total: -15.86 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.59 Total: 14.64 kcal Atomic # 17 Polarization: -4.28 SS G_CDS: -1.34 Total: -5.62 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.74 -6.96 -35.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229338708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.548 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds