Wall clock time and date at job start Tue Mar 31 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50698 * 119.99947 * 2 1 4 4 C 1.50696 * 109.47093 * 125.00194 * 3 2 1 5 5 C 1.38258 * 119.92780 * 270.02207 * 4 3 2 6 6 C 1.38241 * 120.14635 * 179.97438 * 5 4 3 7 7 C 1.38565 * 120.00019 * 359.73089 * 6 5 4 8 8 O 1.35998 * 120.07689 * 180.27288 * 7 6 5 9 9 C 1.39158 * 119.85298 * 0.54508 * 7 6 5 10 10 O 1.35993 * 120.07229 * 179.72622 * 9 7 6 11 11 C 1.42904 * 116.99506 * 185.37383 * 10 9 7 12 12 H 1.08996 * 109.47309 * 21.05952 * 11 10 9 13 13 C 1.50704 * 109.46886 * 141.06167 * 11 10 9 14 14 H 1.08002 * 119.99863 * 34.97624 * 13 11 10 15 15 C 1.37874 * 119.99721 * 214.97939 * 13 11 10 16 16 N 1.31520 * 119.99877 * 184.74412 * 15 13 11 17 17 Si 1.86802 * 120.00387 * 4.73920 * 15 13 11 18 18 H 1.48493 * 109.46865 * 84.88442 * 17 15 13 19 19 H 1.48499 * 109.47063 * 204.88969 * 17 15 13 20 20 H 1.48499 * 109.46595 * 324.88961 * 17 15 13 21 21 C 1.52999 * 109.46974 * 261.05606 * 11 10 9 22 22 Cl 1.80303 * 109.46992 * 64.63513 * 21 11 10 23 23 C 1.38241 * 119.92974 * 90.00183 * 4 3 2 24 24 H 1.08004 * 120.00005 * 180.02562 * 1 2 3 25 25 H 1.08002 * 120.00648 * 359.97438 * 1 2 3 26 26 H 1.08002 * 120.00285 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46713 * 5.00414 * 3 2 1 28 28 H 1.09000 * 109.47455 * 245.00192 * 3 2 1 29 29 H 1.08000 * 119.92615 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.99747 * 180.02562 * 6 5 4 31 31 H 0.96701 * 113.99547 * 270.27587 * 8 7 6 32 32 H 0.96994 * 120.00100 * 180.02562 * 16 15 13 33 33 H 1.08999 * 109.47255 * 184.63444 * 21 11 10 34 34 H 1.09000 * 109.47594 * 304.63268 * 21 11 10 35 35 H 1.08002 * 119.99639 * 0.04804 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3326 1.1638 5 6 2.6083 1.8356 2.3839 6 6 3.4822 1.8625 3.4547 7 6 4.7727 1.3797 3.3081 8 8 5.6320 1.4003 4.3620 9 6 5.1893 0.8788 2.0784 10 8 6.4566 0.4089 1.9280 11 6 6.8522 0.0200 0.6110 12 1 6.2046 0.5033 -0.1205 13 6 8.2802 0.4380 0.3715 14 1 8.9935 0.4125 1.1821 15 6 8.6759 0.8529 -0.8824 16 7 9.9407 1.1284 -1.1151 17 14 7.4157 1.0238 -2.2507 18 1 6.7708 2.3587 -2.1657 19 1 8.0908 0.8829 -3.5658 20 1 6.3837 -0.0344 -2.1080 21 6 6.7352 -1.4991 0.4711 22 17 5.0055 -1.9851 0.6227 23 6 4.3083 0.8546 1.0093 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3584 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 1.6011 2.2074 2.5010 30 1 3.1576 2.2555 4.4069 31 1 6.1515 2.2131 4.4299 32 1 10.2190 1.4206 -1.9971 33 1 7.1142 -1.8044 -0.5042 34 1 7.3184 -1.9822 1.2550 35 1 4.6279 0.4627 0.0550 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229338708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:12 Heat of formation + Delta-G solvation = -70.604757 kcal Electronic energy + Delta-G solvation = -20139.518594 eV Core-core repulsion = 16935.539957 eV Total energy + Delta-G solvation = -3203.978637 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.081 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34797 -39.03068 -38.01816 -36.76804 -35.46308 -35.12030 -32.48433 -31.51367 -30.41778 -27.30693 -26.92871 -24.49426 -22.66585 -22.04819 -20.70281 -19.90802 -18.92428 -18.39574 -17.20360 -16.65288 -16.59942 -16.01745 -15.83937 -15.37030 -15.09789 -14.97834 -14.76593 -14.56279 -14.40846 -13.67169 -13.42254 -13.31405 -13.03219 -12.88852 -12.74949 -12.33866 -12.23079 -11.95513 -11.88373 -11.58042 -11.48698 -11.19893 -11.09548 -10.87920 -10.22968 -9.56161 -8.85578 -8.53181 -6.67166 0.28831 0.54211 1.20796 1.26787 1.34860 1.35996 1.43897 2.14210 2.43451 2.72077 2.89514 3.39696 3.90312 3.91960 3.96722 4.10820 4.15707 4.19606 4.33555 4.44284 4.49253 4.68291 4.77172 4.86509 4.87572 5.05651 5.09873 5.15627 5.35199 5.42260 5.63691 5.75505 5.82846 5.90823 5.99588 6.43575 6.61392 6.96464 7.04926 8.61810 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.007278 C = 0.006215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.714247 B = 3846.370244 C = 4504.435304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C -0.052 4.052 4 C -0.053 4.053 5 C -0.141 4.141 6 C -0.103 4.103 7 C 0.038 3.962 8 O -0.502 6.502 9 C 0.096 3.904 10 O -0.318 6.318 11 C 0.181 3.819 12 H 0.054 0.946 13 C -0.537 4.537 14 H 0.044 0.956 15 C 0.041 3.959 16 N -0.916 5.916 17 Si 0.919 3.081 18 H -0.259 1.259 19 H -0.268 1.268 20 H -0.238 1.238 21 C -0.034 4.034 22 Cl -0.206 7.206 23 C -0.198 4.198 24 H 0.104 0.896 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.396 0.604 32 H 0.278 0.722 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 1.363 1.787 18.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.179 4.179 3 C -0.089 4.089 4 C -0.053 4.053 5 C -0.159 4.159 6 C -0.121 4.121 7 C -0.007 4.007 8 O -0.313 6.313 9 C 0.049 3.951 10 O -0.232 6.232 11 C 0.126 3.874 12 H 0.072 0.928 13 C -0.575 4.575 14 H 0.062 0.938 15 C -0.162 4.162 16 N -0.553 5.553 17 Si 0.740 3.260 18 H -0.184 1.184 19 H -0.192 1.192 20 H -0.162 1.162 21 C -0.097 4.097 22 Cl -0.180 7.180 23 C -0.217 4.217 24 H 0.122 0.878 25 H 0.134 0.866 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.175 0.825 30 H 0.175 0.825 31 H 0.253 0.747 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.928 0.786 1.916 18.048 hybrid contribution 0.755 0.243 -0.818 1.139 sum -17.174 1.029 1.098 17.240 Atomic orbital electron populations 1.24006 0.94972 1.03036 0.99596 1.22760 0.96463 0.97407 1.01270 1.19800 0.96840 0.96952 0.95304 1.19815 0.92757 0.96313 0.96455 1.21042 1.00804 1.02758 0.91282 1.21414 0.91364 0.98639 1.00683 1.18107 0.91783 1.05677 0.85140 1.84812 1.55959 1.45092 1.45421 1.19965 0.85168 0.95405 0.94514 1.86260 1.26470 1.77139 1.33319 1.20628 0.95134 0.90536 0.81126 0.92802 1.20819 0.92906 1.46754 0.96974 0.93796 1.25737 0.97236 0.92730 1.00504 1.69958 1.17208 1.43831 1.24281 0.86153 0.80064 0.80987 0.78835 1.18356 1.19241 1.16163 1.25576 0.80640 0.98375 1.05118 1.98663 1.27168 1.93303 1.98888 1.21232 0.95141 1.06653 0.98697 0.87758 0.86630 0.89302 0.87790 0.90647 0.82533 0.82462 0.74731 0.91190 0.87670 0.88935 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.11 14.32 67.78 0.97 -2.14 16 2 C -0.16 -3.62 9.50 25.65 0.24 -3.37 16 3 C -0.05 -1.19 5.78 29.10 0.17 -1.02 16 4 C -0.05 -1.53 5.12 -19.86 -0.10 -1.63 16 5 C -0.14 -3.51 9.69 22.28 0.22 -3.29 16 6 C -0.10 -2.81 9.98 22.35 0.22 -2.58 16 7 C 0.04 1.35 6.72 22.57 0.15 1.50 16 8 O -0.50 -17.30 13.29 -79.66 -1.06 -18.36 16 9 C 0.10 3.89 6.23 22.57 0.14 4.03 16 10 O -0.32 -15.03 9.46 -79.60 -0.75 -15.78 16 11 C 0.18 8.48 1.80 29.85 0.05 8.54 16 12 H 0.05 2.46 2.61 -2.39 -0.01 2.45 16 13 C -0.54 -29.70 9.24 25.60 0.24 -29.46 16 14 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 15 C 0.04 2.20 5.47 84.65 0.46 2.66 16 16 N -0.92 -53.11 13.96 21.45 0.30 -52.81 16 17 Si 0.92 39.71 26.99 68.60 1.85 41.56 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 20 H -0.24 -9.44 6.82 99.48 0.68 -8.76 16 21 C -0.03 -1.40 6.32 71.98 0.45 -0.95 16 22 Cl -0.21 -7.61 25.78 -2.72 -0.07 -7.68 16 23 C -0.20 -7.21 6.90 22.35 0.15 -7.06 16 24 H 0.10 1.62 8.06 -2.91 -0.02 1.59 16 25 H 0.12 1.54 7.84 -2.91 -0.02 1.52 16 26 H 0.09 2.34 8.06 -2.91 -0.02 2.32 16 27 H 0.10 1.77 7.74 -2.38 -0.02 1.76 16 28 H 0.08 1.79 8.08 -2.39 -0.02 1.77 16 29 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 30 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.40 10.37 9.06 -74.06 -0.67 9.70 16 32 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 33 H 0.10 4.13 8.14 -2.39 -0.02 4.11 16 34 H 0.09 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.12 4.62 4.87 -2.91 -0.01 4.60 16 Total: -1.00 -64.92 312.67 4.06 -60.87 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.41 Total: 27.00 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 3.37 Total: -34.79 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.30 Total: -52.81 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.81 Total: -34.15 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.85 Total: 41.56 kcal Atomic # 17 Polarization: -7.61 SS G_CDS: -0.07 Total: -7.68 kcal Total: -64.92 4.06 -60.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229338708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.739 kcal (2) G-P(sol) polarization free energy of solvation -64.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds