Wall clock time and date at job start Tue Mar 31 2020 06:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38199 * 119.55225 * 2 1 4 4 C 1.38592 * 119.24753 * 179.73275 * 3 2 1 5 5 C 1.39057 * 118.39030 * 0.52702 * 4 3 2 6 6 O 1.35931 * 120.47957 * 179.70851 * 5 4 3 7 7 C 1.42899 * 116.99878 * 5.92995 * 6 5 4 8 8 C 1.53935 * 113.73414 * 254.37586 * 7 6 5 9 9 N 1.47957 * 86.18156 * 221.92153 * 8 7 6 10 10 C 1.46905 * 111.00122 * 137.58278 * 9 8 7 11 11 C 1.50702 * 109.46649 * 70.64160 * 10 9 8 12 12 H 1.07999 * 120.00070 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99678 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00019 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99645 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47399 * 60.00102 * 15 13 11 17 17 H 1.48505 * 109.46736 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.47198 * 299.99643 * 15 13 11 19 19 C 1.47964 * 90.76545 * 24.69473 * 9 8 7 20 20 C 1.38864 * 119.04031 * 359.73676 * 5 4 3 21 21 Cl 1.73609 * 119.66840 * 179.97438 * 20 5 4 22 22 N 1.31882 * 119.54850 * 180.27320 * 2 1 3 23 23 H 1.09000 * 109.47265 * 269.73361 * 1 2 3 24 24 H 1.09007 * 109.46903 * 29.72527 * 1 2 3 25 25 H 1.08996 * 109.47624 * 149.73027 * 1 2 3 26 26 H 1.08004 * 120.37415 * 359.97438 * 3 2 1 27 27 H 1.07998 * 120.81145 * 180.23706 * 4 3 2 28 28 H 1.08997 * 112.94088 * 26.08860 * 7 6 5 29 29 H 1.08993 * 113.76094 * 336.24502 * 8 7 6 30 30 H 1.09001 * 113.75520 * 107.60327 * 8 7 6 31 31 H 1.08992 * 109.47367 * 190.63888 * 10 9 8 32 32 H 1.09001 * 109.46937 * 310.64789 * 10 9 8 33 33 H 0.96997 * 119.99942 * 180.02562 * 14 13 11 34 34 H 1.08997 * 113.75645 * 220.99856 * 19 9 8 35 35 H 1.08999 * 113.76314 * 89.62235 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2022 0.0000 4 6 3.5745 1.1948 0.0056 5 6 4.2293 -0.0320 -0.0001 6 8 5.5874 -0.0887 -0.0009 7 6 6.2885 1.1490 0.1359 8 6 6.9285 1.6465 -1.1727 9 7 8.1020 2.0055 -0.3463 10 6 9.3538 1.6372 -1.0212 11 6 9.5766 2.5502 -2.1993 12 1 8.8598 3.3261 -2.4244 13 6 10.6950 2.3942 -2.9905 14 7 11.5670 1.4484 -2.7173 15 14 10.9716 3.5264 -4.4504 16 1 11.0597 4.9313 -3.9776 17 1 12.2369 3.1539 -5.1328 18 1 9.8384 3.3941 -5.4010 19 6 7.7261 0.9916 0.6636 20 6 3.4755 -1.1982 -0.0057 21 17 4.2761 -2.7387 -0.0136 22 7 2.1574 -1.1473 -0.0055 23 1 -0.3634 -0.0048 1.0276 24 1 -0.3633 0.8925 -0.5096 25 1 -0.3634 -0.8875 -0.5180 26 1 1.6474 2.1369 -0.0004 27 1 4.1326 2.1194 0.0096 28 1 5.7096 1.9094 0.6600 29 1 7.1254 0.8538 -1.8943 30 1 6.4206 2.5056 -1.6109 31 1 10.1853 1.7351 -0.3234 32 1 9.2897 0.6058 -1.3679 33 1 12.3540 1.3390 -3.2737 34 1 7.8554 1.3275 1.6924 35 1 8.1563 0.0072 0.4790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229430563.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:21 Heat of formation + Delta-G solvation = 28.226351 kcal Electronic energy + Delta-G solvation = -19224.036888 eV Core-core repulsion = 16056.636640 eV Total energy + Delta-G solvation = -3167.400248 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.95230 -39.53037 -37.31863 -36.60135 -32.96568 -32.43870 -32.23247 -29.43812 -27.36222 -25.89297 -25.15250 -23.93910 -22.73631 -21.29177 -19.49280 -18.54755 -17.30323 -16.62952 -16.33034 -15.70460 -15.15639 -14.98863 -14.46165 -14.34304 -14.30242 -13.63388 -13.34901 -12.80276 -12.66838 -12.46155 -12.21682 -12.09419 -11.98114 -11.52450 -11.47976 -11.22694 -10.96330 -10.76407 -10.41781 -10.36574 -9.93232 -9.82004 -9.76482 -9.26239 -8.56312 -8.32490 -7.98380 -6.10837 -4.13671 0.74856 0.96016 1.80490 2.98946 3.28898 3.33234 3.35752 3.37820 4.17941 4.35381 4.39763 4.50763 4.64193 4.67753 4.74375 4.97190 5.01966 5.25264 5.31809 5.33973 5.52577 5.62700 5.75514 5.78247 5.93093 5.99052 6.13984 6.24591 6.27816 6.49144 7.10510 7.19033 7.52599 7.56532 7.76443 7.99327 8.30582 8.92560 9.51082 11.00324 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.003651 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.009239 B = 7666.878345 C = 8085.835829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.095 3.905 3 C -0.125 4.125 4 C -0.152 4.152 5 C 0.105 3.895 6 O -0.285 6.285 7 C 0.038 3.962 8 C 0.009 3.991 9 N -0.472 5.472 10 C 0.163 3.837 11 C -0.515 4.515 12 H 0.062 0.938 13 C 0.058 3.942 14 N -0.896 5.896 15 Si 0.900 3.100 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.276 1.276 19 C 0.010 3.990 20 C 0.143 3.857 21 Cl -0.020 7.020 22 N -0.444 5.444 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.154 0.846 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.036 0.964 32 H 0.003 0.997 33 H 0.263 0.737 34 H 0.090 0.910 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.930 -2.249 6.906 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.043 4.043 3 C -0.145 4.145 4 C -0.179 4.179 5 C 0.055 3.945 6 O -0.196 6.196 7 C -0.019 4.019 8 C -0.120 4.120 9 N -0.197 5.197 10 C 0.037 3.963 11 C -0.554 4.554 12 H 0.080 0.920 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.202 1.202 19 C -0.119 4.119 20 C -0.022 4.022 21 Cl 0.009 6.991 22 N -0.156 5.156 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.162 0.838 27 H 0.171 0.829 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.856 -2.733 7.006 21.232 hybrid contribution 0.891 0.538 -1.124 1.532 sum -18.965 -2.194 5.882 19.977 Atomic orbital electron populations 1.20641 0.88070 1.03573 1.03103 1.21032 0.97016 0.87090 0.99192 1.21888 0.93801 0.99514 0.99295 1.21816 0.95421 0.97452 1.03190 1.19620 0.85208 0.92940 0.96731 1.86349 1.13117 1.34322 1.85788 1.25139 0.92383 0.84318 1.00039 1.24244 0.93081 1.00043 0.94661 1.68624 1.03839 1.39206 1.08046 1.20229 0.86463 0.95385 0.94196 1.21018 1.07337 1.16285 1.10720 0.92014 1.24990 0.95839 0.95617 0.97991 1.69938 1.11918 1.32157 1.39469 0.86529 0.77453 0.81018 0.82255 1.20090 1.21226 1.20206 1.24172 0.90734 0.97579 0.99449 1.20877 0.88809 0.86674 1.05885 1.98410 1.76884 1.27253 1.96562 1.66844 1.06698 1.30252 1.11837 0.90478 0.90534 0.90437 0.83842 0.82868 0.87920 0.90166 0.89784 0.94622 0.97939 0.92689 0.89207 0.90463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.68 10.17 36.01 0.37 -0.31 16 2 C 0.09 1.01 6.78 -82.58 -0.56 0.45 16 3 C -0.13 -1.20 9.73 -39.47 -0.38 -1.58 16 4 C -0.15 -1.73 9.11 -39.15 -0.36 -2.08 16 5 C 0.11 1.47 6.69 -39.05 -0.26 1.21 16 6 O -0.29 -4.42 9.63 -19.52 -0.19 -4.61 16 7 C 0.04 0.57 3.87 -25.79 -0.10 0.47 16 8 C 0.01 0.16 7.29 -2.77 -0.02 0.14 16 9 N -0.47 -9.81 6.25 -239.97 -1.50 -11.31 16 10 C 0.16 4.18 4.58 -4.97 -0.02 4.16 16 11 C -0.52 -14.31 8.84 -34.44 -0.30 -14.61 16 12 H 0.06 1.69 7.80 -52.49 -0.41 1.28 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 15 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.01 0.16 7.81 -2.76 -0.02 0.14 16 20 C 0.14 2.07 7.29 -17.29 -0.13 1.94 16 21 Cl -0.02 -0.28 28.66 -51.86 -1.49 -1.77 16 22 N -0.44 -5.99 10.25 -6.50 -0.07 -6.06 16 23 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 27 H 0.15 1.50 6.07 -52.49 -0.32 1.18 16 28 H 0.10 1.29 6.06 -51.93 -0.31 0.98 16 29 H 0.08 1.62 7.78 -51.93 -0.40 1.21 16 30 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.00 0.08 7.69 -51.93 -0.40 -0.32 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.38 7.79 -51.93 -0.40 0.98 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -30.90 314.88 -9.01 -39.91 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -4.34 Total: -3.07 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -1.89 Total: -8.56 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.83 Total: -43.07 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.19 Total: -4.61 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.49 Total: -1.77 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.90 -9.01 -39.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229430563.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.139 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds