Wall clock time and date at job start Tue Mar 31 2020 06:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.37966 * 119.58069 * 2 1 4 4 C 1.39284 * 119.12244 * 180.02562 * 3 2 1 5 5 O 1.35739 * 120.83753 * 179.97438 * 4 3 2 6 6 C 1.42900 * 116.99613 * 185.82989 * 5 4 3 7 7 C 1.53935 * 113.73680 * 254.32480 * 6 5 4 8 8 N 1.47955 * 86.18112 * 221.92625 * 7 6 5 9 9 C 1.46899 * 111.00209 * 137.58403 * 8 7 6 10 10 C 1.50703 * 109.47234 * 70.63608 * 9 8 7 11 11 H 1.08001 * 119.99718 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99840 * 180.02562 * 10 9 8 13 13 N 1.31517 * 120.00292 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99859 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47045 * 59.99995 * 14 12 10 16 16 H 1.48506 * 109.47474 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47454 * 300.00414 * 14 12 10 18 18 C 1.47957 * 90.76603 * 24.68934 * 8 7 6 19 19 C 1.39219 * 118.32034 * 359.97438 * 4 3 2 20 20 C 1.38123 * 119.08681 * 0.25504 * 19 4 3 21 21 Cl 1.73599 * 119.60756 * 179.72182 * 20 19 4 22 22 N 1.31966 * 119.58526 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47525 * 90.00069 * 1 2 3 24 24 H 1.09004 * 109.47429 * 210.00104 * 1 2 3 25 25 H 1.09007 * 109.47564 * 330.00065 * 1 2 3 26 26 H 1.07997 * 120.43446 * 0.03654 * 3 2 1 27 27 H 1.08997 * 112.93783 * 26.03540 * 6 5 4 28 28 H 1.09002 * 113.75551 * 336.23971 * 7 6 5 29 29 H 1.08996 * 113.75875 * 107.60386 * 7 6 5 30 30 H 1.08996 * 109.47508 * 190.64045 * 9 8 7 31 31 H 1.09001 * 109.47160 * 310.63625 * 9 8 7 32 32 H 0.97001 * 120.00122 * 179.97438 * 13 12 10 33 33 H 1.09005 * 113.76149 * 220.99612 * 18 8 7 34 34 H 1.09003 * 113.76103 * 89.62987 * 18 8 7 35 35 H 1.08003 * 120.45908 * 179.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1880 1.1998 0.0000 4 6 3.5808 1.1887 -0.0005 5 8 4.2859 2.3486 -0.0011 6 6 5.7052 2.2448 -0.1310 7 6 6.4682 2.5078 1.1799 8 7 7.4216 3.2812 0.3540 9 6 7.8063 4.5303 1.0247 10 6 8.6842 4.2151 2.2084 11 1 8.9319 3.1895 2.4391 12 6 9.1710 5.2361 2.9968 13 7 8.8689 6.4850 2.7162 14 14 10.2586 4.8454 4.4644 15 1 11.4786 4.1365 4.0016 16 1 10.6466 6.1080 5.1432 17 1 9.5148 3.9810 5.4157 18 6 6.3740 3.5257 -0.6618 19 6 4.2314 -0.0421 -0.0005 20 6 3.4781 -1.1998 -0.0053 21 17 4.2755 -2.7419 -0.0127 22 7 2.1585 -1.1476 -0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8900 0.5138 26 1 1.6482 2.1353 0.0006 27 1 6.0192 1.3389 -0.6492 28 1 5.9145 3.1149 1.8960 29 1 6.8994 1.6109 1.6245 30 1 8.3520 5.1646 0.3263 31 1 6.9109 5.0508 1.3648 32 1 9.2111 7.2032 3.2711 33 1 6.7299 3.4421 -1.6887 34 1 5.7927 4.4306 -0.4842 35 1 5.3103 -0.0910 -0.0013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234619342.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:24 Heat of formation + Delta-G solvation = 25.080430 kcal Electronic energy + Delta-G solvation = -19108.398118 eV Core-core repulsion = 15940.861453 eV Total energy + Delta-G solvation = -3167.536665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.97642 -39.56851 -37.44840 -36.79714 -32.97616 -32.81786 -31.58667 -29.36466 -27.97493 -25.87764 -25.26625 -23.66331 -22.85221 -21.25454 -19.61411 -18.46390 -17.10792 -16.52427 -15.99175 -15.82668 -15.65758 -15.10829 -14.56312 -14.46235 -14.09981 -13.74757 -13.29876 -13.06812 -12.87451 -12.61633 -12.26252 -12.07738 -11.88673 -11.53140 -11.50730 -11.32001 -10.97551 -10.77889 -10.48363 -10.38732 -9.91375 -9.83132 -9.28395 -9.13716 -8.94672 -8.57925 -8.01383 -6.12621 -4.15470 0.69373 1.06001 1.60105 2.93329 3.28383 3.32567 3.35514 3.38905 4.07044 4.34367 4.49393 4.53807 4.64356 4.73345 4.85770 4.98632 5.08630 5.22444 5.23618 5.31411 5.43549 5.64481 5.70978 5.79884 5.89086 5.96194 6.14342 6.22786 6.25622 6.46634 7.06779 7.18732 7.50272 7.56756 7.74166 7.96977 8.28478 8.90940 9.49549 10.98504 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022608 B = 0.003519 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.175387 B = 7954.900152 C = 8477.632576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.177 3.823 3 C -0.209 4.209 4 C 0.197 3.803 5 O -0.291 6.291 6 C 0.036 3.964 7 C 0.009 3.991 8 N -0.471 5.471 9 C 0.163 3.837 10 C -0.515 4.515 11 H 0.062 0.938 12 C 0.058 3.942 13 N -0.897 5.897 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.009 3.991 19 C -0.252 4.252 20 C 0.218 3.782 21 Cl -0.031 7.031 22 N -0.509 5.509 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.149 0.851 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.002 0.998 32 H 0.264 0.736 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 -12.515 -6.911 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.040 3.960 3 C -0.230 4.230 4 C 0.143 3.857 5 O -0.200 6.200 6 C -0.020 4.020 7 C -0.120 4.120 8 N -0.196 5.196 9 C 0.037 3.963 10 C -0.554 4.554 11 H 0.080 0.920 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.728 3.272 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.120 4.120 19 C -0.274 4.274 20 C 0.054 3.946 21 Cl -0.002 7.002 22 N -0.226 5.226 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.166 0.834 27 H 0.124 0.876 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.054 0.946 31 H 0.020 0.980 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.442 -13.241 -7.011 20.810 hybrid contribution 0.769 0.884 1.122 1.622 sum -13.673 -12.357 -5.890 19.347 Atomic orbital electron populations 1.20746 0.87703 1.03970 1.03532 1.20923 0.96851 0.86216 0.91972 1.21385 0.91495 1.00517 1.09578 1.19228 0.91599 0.85452 0.89466 1.86258 1.21580 1.26921 1.85281 1.25207 0.75303 1.01216 1.00290 1.24249 0.92988 1.00223 0.94553 1.68630 1.23473 1.19739 1.07794 1.20232 0.96006 0.85725 0.94291 1.21023 1.30433 0.93463 1.10467 0.91963 1.24986 0.96507 0.94895 0.98018 1.69940 1.45253 0.98872 1.39483 0.86526 0.80893 0.77559 0.82265 1.20050 1.21216 1.20189 1.24186 0.92873 0.95362 0.99542 1.21931 1.02516 0.90991 1.11994 1.21229 0.89522 0.87061 0.96811 1.98409 1.77075 1.28401 1.96324 1.66857 1.07976 1.30109 1.17628 0.89889 0.90036 0.90095 0.83372 0.87615 0.90183 0.89586 0.94582 0.97997 0.92686 0.89107 0.90526 0.82933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 10.17 36.00 0.37 -0.37 16 2 C 0.18 1.95 6.78 -82.64 -0.56 1.39 16 3 C -0.21 -2.39 9.70 -39.29 -0.38 -2.77 16 4 C 0.20 2.62 6.73 -38.83 -0.26 2.36 16 5 O -0.29 -4.29 10.17 -18.93 -0.19 -4.48 16 6 C 0.04 0.54 3.88 -25.80 -0.10 0.44 16 7 C 0.01 0.16 7.29 -2.77 -0.02 0.14 16 8 N -0.47 -9.77 6.25 -239.99 -1.50 -11.27 16 9 C 0.16 4.15 4.58 -4.97 -0.02 4.13 16 10 C -0.52 -14.27 8.84 -34.44 -0.30 -14.58 16 11 H 0.06 1.70 7.80 -52.49 -0.41 1.30 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 14 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.01 0.16 7.81 -2.77 -0.02 0.13 16 19 C -0.25 -3.23 8.84 -39.26 -0.35 -3.58 16 20 C 0.22 2.82 7.27 -17.49 -0.13 2.69 16 21 Cl -0.03 -0.36 29.10 -51.86 -1.51 -1.87 16 22 N -0.51 -6.60 10.25 -6.69 -0.07 -6.67 16 23 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.44 8.08 -51.93 -0.42 0.03 16 26 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 27 H 0.11 1.39 6.07 -51.93 -0.32 1.08 16 28 H 0.08 1.58 7.78 -51.93 -0.40 1.18 16 29 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.00 0.06 7.69 -51.93 -0.40 -0.34 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 1.32 7.79 -51.93 -0.40 0.92 16 35 H 0.15 1.82 6.07 -52.48 -0.32 1.50 16 LS Contribution 315.63 15.07 4.76 4.76 Total: -1.00 -30.24 315.63 -9.02 -39.26 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.34 Total: -2.07 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.88 Total: -8.50 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.83 Total: -43.46 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.19 Total: -4.48 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.51 Total: -1.87 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.24 -9.02 -39.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234619342.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.336 kcal (2) G-P(sol) polarization free energy of solvation -30.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds