Wall clock time and date at job start Tue Mar 31 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30807 * 1 3 3 Si 1.86799 * 120.00019 * 2 1 4 4 H 1.48492 * 109.47082 * 275.26425 * 3 2 1 5 5 H 1.48500 * 109.47130 * 35.26871 * 3 2 1 6 6 H 1.48500 * 109.47040 * 155.26226 * 3 2 1 7 7 C 1.40054 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99981 * 340.87759 * 7 2 1 9 9 C 1.40795 * 119.99517 * 160.87458 * 7 2 1 10 10 C 1.41029 * 120.34617 * 316.24563 * 9 7 2 11 11 F 1.35100 * 120.10259 * 359.97438 * 10 9 7 12 12 C 1.37725 * 119.79829 * 180.02562 * 10 9 7 13 13 C 1.38823 * 120.52703 * 0.02562 * 12 10 9 14 14 C 1.38130 * 120.71168 * 359.97438 * 13 12 10 15 15 C 1.39075 * 120.17748 * 0.26223 * 14 13 12 16 16 C 1.47873 * 120.25806 * 179.74029 * 15 14 13 17 17 C 1.40093 * 120.02606 * 129.72809 * 16 15 14 18 18 C 1.36466 * 120.68822 * 179.68569 * 17 16 15 19 19 C 1.39142 * 120.27910 * 0.60658 * 18 17 16 20 20 O 1.34835 * 133.24908 * 179.70340 * 19 18 17 21 21 C 1.34435 * 110.93589 * 179.97438 * 20 19 18 22 22 C 1.33964 * 110.19306 * 359.97438 * 21 20 19 23 23 C 1.40629 * 119.54850 * 359.67562 * 19 18 17 24 24 C 1.39160 * 120.20316 * 0.02562 * 23 19 18 25 25 H 0.97003 * 119.99696 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.73965 * 180.02562 * 12 10 9 27 27 H 1.07997 * 119.64690 * 179.97438 * 13 12 10 28 28 H 1.07998 * 119.90767 * 179.97438 * 14 13 12 29 29 H 1.08002 * 119.65825 * 359.97438 * 17 16 15 30 30 H 1.07998 * 119.86200 * 180.25485 * 18 17 16 31 31 H 1.08005 * 124.90510 * 180.02562 * 21 20 19 32 32 H 1.08004 * 126.92155 * 179.97438 * 22 21 20 33 33 H 1.07999 * 120.33136 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 2.3783 2.1106 -1.3941 5 1 1.4996 2.6180 0.8084 6 1 3.5908 1.4106 0.5859 7 6 2.0083 -1.2129 0.0005 8 1 1.5130 -2.1222 0.3073 9 6 3.3580 -1.2467 -0.3990 10 6 3.7811 -0.5351 -1.5407 11 9 2.8913 0.1841 -2.2592 12 6 5.1040 -0.5764 -1.9216 13 6 6.0255 -1.3139 -1.1907 14 6 5.6345 -2.0188 -0.0690 15 6 4.3051 -2.0017 0.3393 16 6 3.8835 -2.7603 1.5365 17 6 3.1282 -2.1315 2.5348 18 6 2.7265 -2.8204 3.6422 19 6 3.0741 -4.1584 3.8004 20 8 2.8312 -5.0681 4.7656 21 6 3.3876 -6.2531 4.4598 22 6 4.0202 -6.1766 3.2814 23 6 3.8370 -4.7988 2.8077 24 6 4.2418 -4.0986 1.6753 25 1 -0.4850 0.8401 -0.0004 26 1 5.4270 -0.0308 -2.7958 27 1 7.0592 -1.3367 -1.5025 28 1 6.3622 -2.5886 0.4897 29 1 2.8570 -1.0919 2.4248 30 1 2.1411 -2.3236 4.4017 31 1 3.3320 -7.1391 5.0749 32 1 4.5578 -6.9685 2.7810 33 1 4.8281 -4.5883 0.9119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240425152.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:54 Heat of formation + Delta-G solvation = 4.972463 kcal Electronic energy + Delta-G solvation = -21030.307980 eV Core-core repulsion = 17708.579162 eV Total energy + Delta-G solvation = -3321.728818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.080 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.71593 -41.99415 -38.42209 -36.57333 -33.71805 -32.44828 -31.46099 -30.32036 -28.87882 -27.97079 -25.36291 -23.19715 -21.96554 -21.14768 -20.81370 -20.18124 -17.86598 -17.00265 -16.90837 -16.00695 -15.73815 -15.63879 -14.95100 -14.44716 -14.30423 -14.07367 -13.70507 -13.39199 -13.02158 -12.76110 -12.51339 -12.28933 -12.00912 -11.77567 -11.52782 -11.44131 -11.09146 -10.71482 -10.50523 -10.31877 -10.19793 -9.84989 -9.67972 -9.21976 -8.33371 -7.85849 -7.60047 -7.37667 -6.98129 -4.58050 1.40520 1.64892 2.36312 2.44739 2.72897 3.14611 3.14752 3.17855 3.24256 3.96841 4.21249 4.40105 4.77535 5.03449 5.06471 5.40678 5.41403 5.60768 5.63873 5.78165 5.83900 5.97990 5.99824 6.17803 6.23421 6.31653 6.55936 6.68309 6.75049 6.77561 7.03068 7.08809 7.13133 7.16846 7.33387 7.41190 7.57049 7.65088 7.88573 8.23452 8.44784 8.64165 10.01939 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.006228 C = 0.005156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.471331 B = 4494.433230 C = 5428.839193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.093 3.907 3 Si 0.898 3.102 4 H -0.258 1.258 5 H -0.289 1.289 6 H -0.250 1.250 7 C -0.452 4.452 8 H 0.100 0.900 9 C 0.082 3.918 10 C -0.016 4.016 11 F -0.146 7.146 12 C -0.114 4.114 13 C -0.211 4.211 14 C -0.076 4.076 15 C -0.135 4.135 16 C -0.003 4.003 17 C -0.051 4.051 18 C -0.116 4.116 19 C 0.037 3.963 20 O -0.201 6.201 21 C -0.010 4.010 22 C -0.209 4.209 23 C -0.136 4.136 24 C -0.083 4.083 25 H 0.286 0.714 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.200 0.800 32 H 0.151 0.849 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.845 -5.749 5.408 10.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.128 4.128 3 Si 0.723 3.277 4 H -0.182 1.182 5 H -0.216 1.216 6 H -0.173 1.173 7 C -0.479 4.479 8 H 0.118 0.882 9 C 0.078 3.922 10 C -0.036 4.036 11 F -0.125 7.125 12 C -0.133 4.133 13 C -0.230 4.230 14 C -0.094 4.094 15 C -0.136 4.136 16 C -0.003 4.003 17 C -0.069 4.069 18 C -0.135 4.135 19 C -0.010 4.010 20 O -0.103 6.103 21 C -0.075 4.075 22 C -0.228 4.228 23 C -0.137 4.137 24 C -0.101 4.101 25 H 0.097 0.903 26 H 0.126 0.874 27 H 0.124 0.876 28 H 0.122 0.878 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.217 0.783 32 H 0.169 0.831 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.360 -5.558 5.624 10.147 hybrid contribution 0.105 0.644 -0.372 0.751 sum 6.465 -4.914 5.252 9.671 Atomic orbital electron populations 1.69679 1.08123 1.30358 1.33763 1.26071 0.94673 1.01362 0.90672 0.86618 0.81141 0.80457 0.79450 1.18233 1.21647 1.17309 1.19164 0.92787 0.96601 1.39382 0.88228 1.17633 0.93820 0.90915 0.89834 1.17942 0.87035 1.04285 0.94368 1.91233 1.68293 1.75905 1.77030 1.20713 0.92028 1.00515 1.00081 1.20188 0.98049 1.05343 0.99418 1.20784 0.94576 0.98075 0.95959 1.18485 0.92273 1.06813 0.96060 1.18525 0.96325 0.91971 0.93469 1.20937 0.94486 1.00725 0.90758 1.19554 1.04333 0.89324 1.00246 1.19712 1.01133 0.91681 0.88477 1.83936 1.64494 1.18804 1.43104 1.23745 0.98161 0.87733 0.97899 1.22454 1.06560 0.96325 0.97493 1.19782 1.03098 0.93806 0.97039 1.20614 1.00649 0.93051 0.95811 0.90331 0.87437 0.87602 0.87777 0.84130 0.85728 0.78313 0.83097 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.96 13.93 55.55 0.77 -20.18 16 2 C 0.09 2.39 4.98 -17.31 -0.09 2.30 16 3 Si 0.90 20.81 24.72 -169.99 -4.20 16.61 16 4 H -0.26 -6.05 6.30 56.52 0.36 -5.69 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.25 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.45 -11.72 6.89 -37.93 -0.26 -11.98 16 8 H 0.10 2.77 7.76 -52.49 -0.41 2.36 16 9 C 0.08 1.98 4.68 -106.49 -0.50 1.49 16 10 C -0.02 -0.39 5.65 -38.71 -0.22 -0.61 16 11 F -0.15 -3.64 12.92 2.25 0.03 -3.61 16 12 C -0.11 -2.36 9.99 -39.55 -0.40 -2.76 16 13 C -0.21 -3.99 10.03 -39.40 -0.40 -4.39 16 14 C -0.08 -1.47 9.49 -39.31 -0.37 -1.84 16 15 C -0.13 -2.93 5.52 -104.26 -0.58 -3.51 16 16 C 0.00 -0.06 5.03 -104.89 -0.53 -0.58 16 17 C -0.05 -1.01 8.29 -39.53 -0.33 -1.34 16 18 C -0.12 -2.10 9.99 -39.89 -0.40 -2.50 16 19 C 0.04 0.66 7.42 -38.34 -0.28 0.37 16 20 O -0.20 -3.24 10.58 3.87 0.04 -3.20 16 21 C -0.01 -0.13 11.95 29.23 0.35 0.22 16 22 C -0.21 -2.91 11.14 -37.61 -0.42 -3.33 16 23 C -0.14 -2.40 6.39 -105.18 -0.67 -3.07 16 24 C -0.08 -1.53 9.57 -38.87 -0.37 -1.90 16 25 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 26 H 0.11 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.10 1.75 8.03 -52.49 -0.42 1.32 16 29 H 0.14 2.88 7.29 -52.49 -0.38 2.49 16 30 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.20 1.52 8.06 -52.48 -0.42 1.09 16 32 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.12 2.03 8.04 -52.49 -0.42 1.61 16 LS Contribution 289.35 15.07 4.36 4.36 Total: -1.00 -28.15 289.35 -7.38 -35.53 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -2.93 Total: 3.91 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: -5.45 Total: -33.41 kcal Atomic # 7 Polarization: -20.96 SS G_CDS: 0.77 Total: -20.18 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: 0.04 Total: -3.20 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.03 Total: -3.61 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.20 Total: 16.61 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.15 -7.38 -35.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240425152.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.498 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds