Wall clock time and date at job start Tue Mar 31 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31585 * 1 3 3 Si 1.86807 * 119.99799 * 2 1 4 4 H 1.48502 * 109.46759 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47316 * 300.00229 * 3 2 1 6 6 H 1.48494 * 109.47002 * 60.00373 * 3 2 1 7 7 C 1.38594 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00510 * 179.97438 * 7 2 1 9 9 O 1.34809 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.35739 * 117.00305 * 185.05797 * 9 7 2 11 11 C 1.39535 * 120.35976 * 354.54559 * 10 9 7 12 12 C 1.38080 * 118.48690 * 179.70543 * 11 10 9 13 13 C 1.39675 * 119.13134 * 0.52975 * 12 11 10 14 14 C 1.47870 * 119.67648 * 179.72753 * 13 12 11 15 15 C 1.40033 * 126.42018 * 359.75948 * 14 13 12 16 16 N 1.31039 * 108.84075 * 179.97438 * 15 14 13 17 17 N 1.39908 * 109.29833 * 359.97438 * 16 15 14 18 18 C 1.36508 * 132.33622 * 180.29823 * 17 16 15 19 19 C 1.35618 * 119.12892 * 180.17783 * 18 17 16 20 20 C 1.40138 * 119.41134 * 359.49739 * 19 18 17 21 21 N 1.31364 * 120.20276 * 0.25633 * 20 19 18 22 22 C 1.33586 * 120.84816 * 359.97438 * 21 20 19 23 23 N 1.32844 * 120.65012 * 359.46127 * 13 12 11 24 24 C 1.31746 * 121.64387 * 0.26584 * 23 13 12 25 25 H 0.97002 * 120.00466 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.75495 * 359.94696 * 11 10 9 27 27 H 1.08000 * 120.43770 * 180.28237 * 12 11 10 28 28 H 1.08000 * 125.57351 * 359.97215 * 15 14 13 29 29 H 1.08002 * 120.43820 * 359.92656 * 18 17 16 30 30 H 1.07997 * 120.29224 * 179.78294 * 19 18 17 31 31 H 1.07998 * 119.89898 * 180.23468 * 20 19 18 32 32 H 1.08005 * 119.59263 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 3.7098 1.3464 -0.0006 5 1 1.8910 2.3966 -1.2124 6 1 1.8911 2.3964 1.2125 7 6 2.0089 -1.2002 -0.0005 8 1 3.0889 -1.2003 -0.0010 9 8 1.3349 -2.3677 -0.0005 10 6 2.0701 -3.5038 0.1056 11 6 3.4641 -3.4453 0.0944 12 6 4.1737 -4.6241 0.2110 13 6 3.4765 -5.8291 0.3241 14 6 4.2243 -7.0992 0.4435 15 6 5.6168 -7.2464 0.4527 16 7 5.9071 -8.5184 0.5744 17 7 4.7219 -9.2579 0.6507 18 6 4.4793 -10.5944 0.7861 19 6 3.1962 -11.0315 0.8282 20 6 2.1498 -10.1032 0.7427 21 7 2.4116 -8.8220 0.6178 22 6 3.6719 -8.3818 0.5707 23 7 2.1482 -5.8449 0.3308 24 6 1.4432 -4.7368 0.2269 25 1 -0.4851 0.8400 0.0004 26 1 3.9765 -2.4992 0.0007 27 1 5.2537 -4.6150 0.2106 28 1 6.3341 -6.4429 0.3725 29 1 5.2984 -11.2950 0.8546 30 1 2.9827 -12.0851 0.9313 31 1 1.1251 -10.4422 0.7793 32 1 0.3644 -4.7880 0.2365 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240929678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:07 Heat of formation + Delta-G solvation = 133.298305 kcal Electronic energy + Delta-G solvation = -20158.155642 eV Core-core repulsion = 16894.204162 eV Total energy + Delta-G solvation = -3263.951480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21241 -39.41617 -38.02273 -37.02130 -34.03731 -32.45353 -31.48700 -30.90096 -30.53323 -27.67555 -25.54301 -24.80844 -23.60243 -22.70544 -21.99589 -20.57147 -18.24116 -18.02433 -17.38747 -16.86049 -16.34902 -15.97838 -15.40895 -14.96788 -14.53153 -14.21522 -13.95129 -13.89033 -13.26575 -13.02284 -12.87328 -12.62102 -12.33911 -12.28756 -11.78245 -11.59688 -11.25251 -11.03344 -11.00066 -10.52939 -9.73272 -9.69418 -9.54844 -9.07411 -8.88046 -8.60682 -8.26438 -6.84134 -6.55764 -4.11709 0.49477 0.81704 1.94304 2.04205 2.19400 2.85027 3.08314 3.09424 3.14559 3.55486 3.88122 3.95316 4.06470 4.32621 4.72817 4.77923 4.90612 5.01338 5.05748 5.25549 5.27881 5.35813 5.51681 5.58736 5.90032 5.94497 6.09024 6.25525 6.32371 6.47448 6.69356 6.87956 7.05922 7.23950 7.43159 7.54273 7.78543 7.87092 8.87099 8.93007 9.55654 10.61011 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.040595 B = 0.003480 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.571526 B = 8043.232527 C = 8716.818188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.164 6.164 10 C 0.102 3.898 11 C -0.198 4.198 12 C -0.109 4.109 13 C 0.090 3.910 14 C -0.141 4.141 15 C 0.096 3.904 16 N -0.316 5.316 17 N -0.317 5.317 18 C 0.153 3.847 19 C -0.225 4.225 20 C 0.156 3.844 21 N -0.416 5.416 22 C 0.263 3.737 23 N -0.417 5.417 24 C 0.035 3.965 25 H 0.272 0.728 26 H 0.137 0.863 27 H 0.118 0.882 28 H 0.199 0.801 29 H 0.174 0.826 30 H 0.163 0.837 31 H 0.176 0.824 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 -17.522 1.447 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.065 6.065 10 C 0.045 3.955 11 C -0.224 4.224 12 C -0.129 4.129 13 C -0.046 4.046 14 C -0.154 4.154 15 C -0.083 4.083 16 N -0.139 5.139 17 N -0.089 5.089 18 C 0.018 3.982 19 C -0.249 4.249 20 C -0.030 4.030 21 N -0.126 5.126 22 C 0.035 3.965 23 N -0.126 5.126 24 C -0.129 4.129 25 H 0.082 0.918 26 H 0.155 0.845 27 H 0.136 0.864 28 H 0.216 0.784 29 H 0.191 0.809 30 H 0.180 0.820 31 H 0.193 0.807 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.874 -18.029 1.491 19.730 hybrid contribution 0.971 1.550 -0.074 1.831 sum 8.845 -16.479 1.417 18.756 Atomic orbital electron populations 1.70057 1.06008 1.27916 1.44851 1.25333 0.95896 0.98984 0.96258 0.85609 0.79156 0.80079 0.78381 1.18986 1.20013 1.20000 1.21414 0.91948 0.80725 1.52716 0.88871 1.83971 1.34192 1.11355 1.76980 1.20577 0.91003 0.89419 0.94472 1.21413 0.93883 0.98850 1.08247 1.21537 0.99506 0.91990 0.99868 1.18126 0.89133 0.89294 1.08026 1.18092 0.91269 0.89525 1.16532 1.23886 0.94869 0.93921 0.95665 1.77583 1.01126 1.04218 1.31003 1.46938 1.07950 1.06319 1.47662 1.21926 0.99036 0.82112 0.95086 1.21808 0.91468 1.02947 1.08699 1.23459 1.00557 0.87619 0.91321 1.68295 1.16338 1.16089 1.11829 1.20447 0.83251 0.91071 1.01733 1.67603 1.06740 1.29087 1.09146 1.21795 0.99733 0.85254 1.06099 0.91798 0.84532 0.86408 0.78427 0.80865 0.81979 0.80658 0.83188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.41 13.67 55.48 0.76 -23.65 16 2 C 0.04 1.09 5.49 -17.53 -0.10 0.99 16 3 Si 0.94 19.90 29.55 -169.99 -5.02 14.88 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.39 -10.62 9.49 30.86 0.29 -10.32 16 8 H 0.09 2.32 5.25 -52.49 -0.28 2.04 16 9 O -0.16 -4.57 9.76 0.14 0.00 -4.57 16 10 C 0.10 2.47 6.67 -38.87 -0.26 2.21 16 11 C -0.20 -4.23 9.25 -39.16 -0.36 -4.60 16 12 C -0.11 -2.03 9.61 -39.10 -0.38 -2.41 16 13 C 0.09 1.81 6.75 -82.95 -0.56 1.25 16 14 C -0.14 -2.50 6.14 -104.54 -0.64 -3.15 16 15 C 0.10 1.39 11.35 -17.22 -0.20 1.19 16 16 N -0.32 -4.64 12.61 30.69 0.39 -4.25 16 17 N -0.32 -4.49 3.89 -11.97 -0.05 -4.54 16 18 C 0.15 1.44 11.30 -16.41 -0.19 1.26 16 19 C -0.22 -1.69 10.05 -39.81 -0.40 -2.09 16 20 C 0.16 1.62 11.28 -17.04 -0.19 1.42 16 21 N -0.42 -6.64 10.15 -11.99 -0.12 -6.76 16 22 C 0.26 4.45 7.73 -155.51 -1.20 3.25 16 23 N -0.42 -9.11 9.81 -9.65 -0.09 -9.21 16 24 C 0.03 0.78 11.13 -17.36 -0.19 0.59 16 25 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 26 H 0.14 2.81 5.75 -52.49 -0.30 2.51 16 27 H 0.12 1.72 7.01 -52.49 -0.37 1.36 16 28 H 0.20 2.12 7.29 -52.49 -0.38 1.74 16 29 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.16 0.50 8.06 -52.49 -0.42 0.08 16 31 H 0.18 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.15 3.20 8.06 -52.48 -0.42 2.78 16 LS Contribution 292.84 15.07 4.41 4.41 Total: -1.00 -34.80 292.84 -6.25 -41.05 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -2.15 Total: 3.04 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -4.37 Total: -10.40 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.88 Total: -48.41 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: 0.00 Total: -4.57 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.80 -6.25 -41.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240929678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.348 kcal (2) G-P(sol) polarization free energy of solvation -34.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds