Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 119.99954 * 2 1 4 4 H 1.48497 * 109.46945 * 239.99651 * 3 2 1 5 5 H 1.48500 * 109.47184 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47120 * 119.99713 * 3 2 1 7 7 C 1.38714 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99721 * 180.02562 * 7 2 1 9 9 O 1.34794 * 120.00199 * 0.02562 * 7 2 1 10 10 C 1.35516 * 116.99944 * 185.06523 * 9 7 2 11 11 C 1.38814 * 120.16866 * 354.39467 * 10 9 7 12 12 C 1.38035 * 120.08280 * 180.02562 * 11 10 9 13 13 C 1.38597 * 120.41971 * 359.70782 * 12 11 10 14 14 C 1.37798 * 120.33413 * 0.55160 * 13 12 11 15 15 C 1.39763 * 119.90630 * 359.46974 * 14 13 12 16 16 C 1.47355 * 120.20217 * 180.22934 * 15 14 13 17 17 N 1.32302 * 119.06853 * 180.02562 * 16 15 14 18 18 C 1.32260 * 122.03853 * 180.02562 * 17 16 15 19 19 C 1.39542 * 119.61585 * 359.97438 * 18 17 16 20 20 N 1.34475 * 135.08403 * 179.97438 * 19 18 17 21 21 C 1.31587 * 108.21199 * 180.02562 * 20 19 18 22 22 N 1.32878 * 110.31164 * 0.02562 * 21 20 19 23 23 C 1.32366 * 108.75871 * 0.02562 * 22 21 20 24 24 N 1.35827 * 119.07184 * 359.73663 * 16 15 14 25 25 H 0.96991 * 120.30464 * 359.97331 * 24 16 15 26 26 H 0.97003 * 120.00111 * 0.02562 * 1 2 3 27 27 H 1.08009 * 119.95403 * 0.02918 * 11 10 9 28 28 H 1.08000 * 119.78984 * 179.97438 * 12 11 10 29 29 H 1.07998 * 119.83013 * 180.27983 * 13 12 11 30 30 H 1.07991 * 120.04982 * 179.74659 * 14 13 12 31 31 H 1.08001 * 120.19726 * 179.97438 * 18 17 16 32 32 H 1.07998 * 124.84257 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0086 -1.2013 0.0005 8 1 3.0886 -1.2013 0.0010 9 8 1.3346 -2.3687 0.0005 10 6 2.0685 -3.5028 0.1077 11 6 3.4552 -3.4403 0.0942 12 6 4.2010 -4.5967 0.2029 13 6 3.5746 -5.8263 0.3322 14 6 2.1991 -5.9089 0.3423 15 6 1.4304 -4.7468 0.2327 16 6 -0.0409 -4.8271 0.2478 17 7 -0.7466 -3.7130 0.1421 18 6 -2.0691 -3.7169 0.1495 19 6 -2.7545 -4.9262 0.2714 20 7 -4.0493 -5.2869 0.3139 21 6 -4.1078 -6.5952 0.4424 22 7 -2.8834 -7.1095 0.4866 23 6 -2.0043 -6.1250 0.3861 24 7 -0.6343 -6.0434 0.3639 25 1 -0.0949 -6.8463 0.4353 26 1 -0.4850 0.8401 -0.0004 27 1 3.9511 -2.4856 -0.0014 28 1 5.2796 -4.5426 0.1915 29 1 4.1675 -6.7245 0.4211 30 1 1.7158 -6.8697 0.4391 31 1 -2.6155 -2.7894 0.0617 32 1 -5.0207 -7.1689 0.5041 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243579890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = 122.779422 kcal Electronic energy + Delta-G solvation = -20939.696475 eV Core-core repulsion = 17675.288862 eV Total energy + Delta-G solvation = -3264.407613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82136 -39.77574 -38.51602 -36.79917 -34.57360 -32.80838 -31.65502 -30.39939 -29.53134 -28.33838 -25.82754 -24.80428 -23.49978 -21.88911 -21.47864 -20.71923 -18.46930 -17.89167 -17.75830 -17.11314 -16.30636 -15.44091 -15.28600 -14.97565 -14.68659 -14.18193 -14.11937 -14.00490 -13.51198 -13.02027 -12.94916 -12.82341 -12.04902 -11.67670 -11.38932 -11.32155 -11.16017 -11.15155 -10.73072 -10.20490 -9.84195 -9.48930 -9.23791 -9.00916 -8.99784 -8.44384 -8.02723 -7.40361 -6.87056 -4.36184 0.17229 1.48837 1.98145 2.35672 2.53922 2.91481 2.93627 2.96979 3.62928 3.80477 4.02003 4.19873 4.27401 4.59678 4.64275 4.77220 4.88196 5.11674 5.17331 5.27012 5.41164 5.66669 5.74632 6.01473 6.04935 6.16412 6.26439 6.59814 6.68239 6.72306 6.86716 6.93881 7.06501 7.30628 7.41956 7.52474 7.58199 8.16487 8.52122 8.79013 9.19686 10.24305 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.006221 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.000223 B = 4500.141028 C = 6254.794045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.047 3.953 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.390 4.390 8 H 0.100 0.900 9 O -0.094 6.094 10 C 0.182 3.818 11 C -0.222 4.222 12 C -0.045 4.045 13 C -0.216 4.216 14 C -0.038 4.038 15 C -0.185 4.185 16 C 0.448 3.552 17 N -0.465 5.465 18 C 0.281 3.719 19 C -0.097 4.097 20 N -0.514 5.514 21 C 0.201 3.799 22 N -0.564 5.564 23 C 0.229 3.771 24 N -0.538 5.538 25 H 0.415 0.585 26 H 0.279 0.721 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.178 0.822 32 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.904 -5.168 0.335 7.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.465 4.465 8 H 0.117 0.883 9 O 0.013 5.987 10 C 0.119 3.881 11 C -0.241 4.241 12 C -0.064 4.064 13 C -0.236 4.236 14 C -0.058 4.058 15 C -0.190 4.190 16 C 0.198 3.802 17 N -0.182 5.182 18 C 0.115 3.885 19 C -0.230 4.230 20 N -0.235 5.235 21 C -0.091 4.091 22 N -0.292 5.292 23 C -0.025 4.025 24 N -0.144 5.144 25 H 0.254 0.746 26 H 0.090 0.910 27 H 0.155 0.845 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.195 0.805 32 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 5.115 -4.462 0.263 6.793 hybrid contribution 0.618 -0.248 0.089 0.672 sum 5.733 -4.710 0.352 7.428 Atomic orbital electron populations 1.70046 1.06144 1.28899 1.38690 1.25478 0.95958 0.99296 0.95665 0.85703 0.78957 0.78915 0.79596 1.19067 1.19818 1.19059 1.21721 0.92366 0.80951 1.51449 0.88279 1.84173 1.33834 1.11085 1.69590 1.19048 0.89807 0.86822 0.92470 1.21204 0.93046 0.99641 1.10241 1.21008 0.99133 0.92106 0.94158 1.20465 0.93520 0.97618 1.11969 1.20644 0.94292 0.94945 0.95887 1.16953 0.85522 0.93013 1.23544 1.21548 0.93453 0.78770 0.86385 1.69006 1.06697 1.22315 1.20169 1.22974 0.88536 0.96697 0.80338 1.21053 0.92457 0.94493 1.15028 1.70670 1.16888 1.14211 1.21769 1.24987 0.94214 0.89105 1.00762 1.70118 0.99940 1.31314 1.27784 1.20182 0.83714 0.94630 1.03991 1.42135 1.04895 1.10590 1.56734 0.74637 0.91043 0.84528 0.86534 0.86538 0.87016 0.80480 0.78879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.18 13.67 55.48 0.76 -19.42 16 2 C 0.05 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.95 17.44 29.55 -169.99 -5.02 12.42 16 4 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 5 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 6 H -0.27 -4.79 7.11 56.52 0.40 -4.38 16 7 C -0.39 -9.09 9.49 30.91 0.29 -8.80 16 8 H 0.10 2.07 5.21 -52.48 -0.27 1.80 16 9 O -0.09 -2.23 7.54 0.87 0.01 -2.22 16 10 C 0.18 3.68 6.66 -38.57 -0.26 3.43 16 11 C -0.22 -3.86 9.16 -39.44 -0.36 -4.22 16 12 C -0.04 -0.64 10.03 -39.52 -0.40 -1.03 16 13 C -0.22 -2.89 10.02 -39.61 -0.40 -3.29 16 14 C -0.04 -0.54 9.52 -39.17 -0.37 -0.91 16 15 C -0.18 -3.33 5.89 -104.82 -0.62 -3.95 16 16 C 0.45 8.48 7.61 -154.74 -1.18 7.30 16 17 N -0.47 -9.88 8.04 -10.54 -0.08 -9.97 16 18 C 0.28 5.68 11.33 -16.88 -0.19 5.48 16 19 C -0.10 -2.04 7.31 -84.83 -0.62 -2.66 16 20 N -0.51 -10.81 11.38 -12.45 -0.14 -10.95 16 21 C 0.20 3.84 12.88 -91.39 -1.18 2.67 16 22 N -0.56 -11.33 11.31 -13.47 -0.15 -11.49 16 23 C 0.23 4.57 8.54 -155.66 -1.33 3.24 16 24 N -0.54 -9.19 5.34 -9.90 -0.05 -9.25 16 25 H 0.41 5.70 6.77 -40.82 -0.28 5.42 16 26 H 0.28 6.42 8.31 -40.82 -0.34 6.09 16 27 H 0.14 2.30 5.64 -52.48 -0.30 2.01 16 28 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 30 H 0.11 1.24 6.33 -52.49 -0.33 0.91 16 31 H 0.18 3.29 8.06 -52.49 -0.42 2.87 16 32 H 0.19 2.87 8.06 -52.49 -0.42 2.44 16 LS Contribution 286.59 15.07 4.32 4.32 Total: -1.00 -29.38 286.59 -9.08 -38.46 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -2.00 Total: 9.83 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -6.70 Total: -1.74 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.33 Total: -61.07 kcal Atomic # 8 Polarization: -2.23 SS G_CDS: 0.01 Total: -2.22 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.02 Total: 12.42 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.38 -9.08 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243579890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.237 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds