Wall clock time and date at job start Tue Mar 31 2020 06:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31547 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47204 * 240.00406 * 3 2 1 5 5 H 1.48500 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47381 * 120.00032 * 3 2 1 7 7 C 1.38655 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00193 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99557 * 359.97438 * 7 2 1 10 10 C 1.35632 * 116.99470 * 174.63049 * 9 7 2 11 11 C 1.38766 * 120.14353 * 354.01271 * 10 9 7 12 12 C 1.38096 * 120.05528 * 180.24804 * 11 10 9 13 13 C 1.38479 * 120.35085 * 0.04730 * 12 11 10 14 14 C 1.37969 * 120.28465 * 359.95312 * 13 12 11 15 15 C 1.39404 * 119.93402 * 0.02562 * 14 13 12 16 16 C 1.48074 * 120.17102 * 179.97438 * 15 14 13 17 17 N 1.32640 * 120.04583 * 131.87937 * 16 15 14 18 18 C 1.32154 * 122.29088 * 179.97438 * 17 16 15 19 19 C 1.36663 * 121.66613 * 0.02562 * 18 17 16 20 20 C 1.39982 * 118.98227 * 359.97438 * 19 18 17 21 21 N 1.34441 * 135.97440 * 180.02562 * 20 19 18 22 22 N 1.28775 * 109.18392 * 179.34807 * 21 20 19 23 23 N 1.28898 * 111.70467 * 0.56610 * 22 21 20 24 24 H 0.97001 * 125.90767 * 179.55154 * 23 22 21 25 25 C 1.36866 * 108.19054 * 359.51311 * 23 22 21 26 26 H 0.97004 * 120.00236 * 359.97438 * 1 2 3 27 27 H 1.07993 * 119.97303 * 0.27385 * 11 10 9 28 28 H 1.08007 * 119.82720 * 180.02562 * 12 11 10 29 29 H 1.08001 * 119.86016 * 179.97438 * 13 12 11 30 30 H 1.07997 * 120.03648 * 180.02562 * 14 13 12 31 31 H 1.07997 * 119.16669 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.50614 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2494 1.6178 0.0000 4 1 3.1031 1.6965 -1.2125 5 1 1.2844 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0689 -3.5030 -0.1142 11 6 3.4347 -3.4289 -0.3481 12 6 4.1795 -4.5855 -0.4686 13 6 3.5709 -5.8244 -0.3582 14 6 2.2139 -5.9148 -0.1257 15 6 1.4507 -4.7548 -0.0016 16 6 -0.0061 -4.8457 0.2474 17 7 -0.5628 -4.1169 1.2057 18 6 -1.8577 -4.1629 1.4656 19 6 -2.7034 -4.9697 0.7574 20 6 -2.1809 -5.7657 -0.2687 21 7 -2.6742 -6.6514 -1.1516 22 7 -1.7167 -7.0860 -1.8950 23 7 -0.5852 -6.5610 -1.5702 24 1 0.2694 -6.7466 -1.9899 25 6 -0.7981 -5.6956 -0.5315 26 1 -0.4851 0.8401 0.0004 27 1 3.9156 -2.4659 -0.4356 28 1 5.2424 -4.5235 -0.6502 29 1 4.1610 -6.7239 -0.4542 30 1 1.7435 -6.8831 -0.0399 31 1 -2.2576 -3.5479 2.2582 32 1 -3.7588 -4.9923 0.9855 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243580260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:32 Heat of formation + Delta-G solvation = 125.529968 kcal Electronic energy + Delta-G solvation = -21138.058352 eV Core-core repulsion = 17873.770012 eV Total energy + Delta-G solvation = -3264.288340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.10827 -39.44639 -38.36068 -36.56074 -33.92331 -32.47098 -31.67040 -31.18423 -29.45084 -28.63812 -25.52749 -24.63453 -23.42818 -22.82272 -21.70195 -20.90068 -18.39171 -18.18926 -18.11853 -16.91209 -16.16138 -15.79862 -15.25088 -14.73335 -14.50170 -14.36947 -13.87133 -13.73121 -13.23810 -12.97467 -12.67112 -12.38853 -11.93500 -11.80229 -11.53329 -11.18078 -11.14078 -10.98660 -10.90960 -10.81440 -10.55607 -9.62089 -9.26206 -9.20767 -8.98123 -8.73419 -8.00738 -7.32776 -6.57748 -4.14652 0.64493 1.41876 1.87563 2.17970 2.59110 2.67826 3.06051 3.07150 3.09986 3.85102 4.03223 4.14391 4.35532 4.57428 4.76789 4.93392 5.00733 5.08031 5.11989 5.41991 5.55376 5.61411 5.77170 5.96183 5.99673 6.14716 6.18445 6.44715 6.55846 6.74741 6.86165 6.90259 6.98950 7.15350 7.19872 7.56718 7.83497 8.31502 8.41737 8.85524 9.53429 10.57820 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016295 B = 0.006509 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.931455 B = 4300.662438 C = 5540.784913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.395 4.395 8 H 0.093 0.907 9 O -0.142 6.142 10 C 0.183 3.817 11 C -0.231 4.231 12 C -0.058 4.058 13 C -0.218 4.218 14 C -0.058 4.058 15 C -0.153 4.153 16 C 0.261 3.739 17 N -0.427 5.427 18 C 0.102 3.898 19 C -0.131 4.131 20 C 0.043 3.957 21 N -0.260 5.260 22 N -0.015 5.015 23 N -0.396 5.396 24 H 0.453 0.547 25 C -0.023 4.023 26 H 0.273 0.727 27 H 0.132 0.868 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.165 0.835 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 -8.313 -0.044 8.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.162 4.162 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.111 0.889 9 O -0.041 6.041 10 C 0.125 3.875 11 C -0.251 4.251 12 C -0.076 4.076 13 C -0.237 4.237 14 C -0.078 4.078 15 C -0.156 4.156 16 C 0.109 3.891 17 N -0.137 5.137 18 C -0.048 4.048 19 C -0.156 4.156 20 C -0.087 4.087 21 N -0.136 5.136 22 N 0.002 4.998 23 N -0.126 5.126 24 H 0.301 0.699 25 C -0.147 4.147 26 H 0.083 0.917 27 H 0.150 0.850 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.126 0.874 31 H 0.182 0.818 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.097 -8.410 -0.332 8.487 hybrid contribution 1.062 0.958 -0.152 1.439 sum 2.159 -7.451 -0.484 7.773 Atomic orbital electron populations 1.70042 1.05994 1.28052 1.43612 1.25319 0.95839 0.98913 0.96115 0.85780 0.78807 0.79593 0.79303 1.19438 1.20157 1.19291 1.21364 0.91877 0.80823 1.53011 0.88934 1.84040 1.33919 1.11191 1.74985 1.19214 0.89985 0.87135 0.91215 1.21180 0.93966 0.99329 1.10599 1.20888 0.98657 0.92220 0.95867 1.20455 0.94248 0.97094 1.11915 1.20597 0.93982 0.95250 0.97933 1.17412 0.89796 0.91724 1.16655 1.18895 0.92622 0.88523 0.89036 1.68050 1.13126 1.17559 1.14916 1.22331 0.88337 0.95681 0.98403 1.20956 1.01835 0.97539 0.95251 1.20000 0.90431 0.99223 0.99057 1.75262 1.21098 1.11916 1.05281 1.77973 0.87758 1.16023 1.18055 1.44733 1.10858 1.31337 1.25660 0.69947 1.20880 0.97516 1.00540 0.95728 0.91745 0.85015 0.87054 0.87072 0.87374 0.81781 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.68 13.67 55.48 0.76 -22.92 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 3 Si 0.94 19.59 29.55 -169.99 -5.02 14.56 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.39 -10.45 9.44 30.89 0.29 -10.16 16 8 H 0.09 2.24 5.30 -52.49 -0.28 1.96 16 9 O -0.14 -3.82 8.71 0.45 0.00 -3.81 16 10 C 0.18 4.16 6.62 -38.70 -0.26 3.91 16 11 C -0.23 -4.63 9.13 -39.44 -0.36 -4.99 16 12 C -0.06 -0.95 10.03 -39.54 -0.40 -1.34 16 13 C -0.22 -3.32 10.03 -39.59 -0.40 -3.72 16 14 C -0.06 -0.95 9.09 -39.25 -0.36 -1.30 16 15 C -0.15 -3.07 5.64 -104.74 -0.59 -3.66 16 16 C 0.26 5.27 6.07 -82.87 -0.50 4.77 16 17 N -0.43 -9.06 9.61 -10.04 -0.10 -9.15 16 18 C 0.10 1.79 11.08 -17.98 -0.20 1.59 16 19 C -0.13 -2.12 10.11 -39.50 -0.40 -2.52 16 20 C 0.04 0.78 7.43 -85.05 -0.63 0.15 16 21 N -0.26 -4.61 12.42 32.05 0.40 -4.21 16 22 N -0.01 -0.24 13.30 60.35 0.80 0.56 16 23 N -0.40 -5.98 6.98 32.46 0.23 -5.75 16 24 H 0.45 5.33 8.61 -190.18 -1.64 3.69 16 25 C -0.02 -0.42 6.88 -83.99 -0.58 -1.00 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.13 2.62 5.71 -52.49 -0.30 2.32 16 28 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 29 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.11 1.47 8.01 -52.49 -0.42 1.05 16 31 H 0.17 2.39 8.06 -52.49 -0.42 1.96 16 32 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -31.26 290.77 -6.48 -37.74 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.46 Total: 5.80 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -4.47 Total: -17.19 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 2.09 Total: -41.48 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: 0.00 Total: -3.81 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.26 -6.48 -37.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243580260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.273 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds