Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86801 * 120.00044 * 2 1 4 4 H 1.48499 * 109.47244 * 240.00352 * 3 2 1 5 5 H 1.48500 * 109.47061 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47473 * 119.99719 * 3 2 1 7 7 C 1.38641 * 120.00304 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00522 * 180.02562 * 7 2 1 9 9 O 1.34811 * 119.99744 * 359.97438 * 7 2 1 10 10 C 1.35676 * 117.00098 * 185.06341 * 9 7 2 11 11 C 1.38758 * 120.13385 * 354.40712 * 10 9 7 12 12 C 1.38110 * 120.04838 * 179.97438 * 11 10 9 13 13 C 1.38437 * 120.32383 * 359.97438 * 12 11 10 14 14 C 1.38030 * 120.26966 * 0.02562 * 13 12 11 15 15 C 1.39274 * 119.93906 * 359.97438 * 14 13 12 16 16 C 1.48314 * 120.15203 * 180.02562 * 15 14 13 17 17 C 1.39903 * 120.32528 * 129.72755 * 16 15 14 18 18 N 1.31370 * 121.17212 * 179.68879 * 17 16 15 19 19 C 1.32620 * 121.76908 * 0.59935 * 18 17 16 20 20 N 1.37330 * 133.44526 * 179.72039 * 19 18 17 21 21 H 0.96999 * 126.61818 * 359.95313 * 20 19 18 22 22 N 1.40198 * 106.76255 * 179.97438 * 20 19 18 23 23 N 1.28657 * 109.50045 * 0.02562 * 22 20 19 24 24 C 1.35290 * 110.05609 * 359.97438 * 23 22 20 25 25 C 1.39111 * 120.32886 * 309.99767 * 16 15 14 26 26 H 0.96998 * 119.99667 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.97297 * 0.02562 * 11 10 9 28 28 H 1.07999 * 119.84180 * 180.27960 * 12 11 10 29 29 H 1.08001 * 119.86941 * 180.02562 * 13 12 11 30 30 H 1.07996 * 120.02621 * 180.02562 * 14 13 12 31 31 H 1.08001 * 119.41400 * 359.97438 * 17 16 15 32 32 H 1.07996 * 120.94196 * 0.03193 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1034 1.6965 1.2125 7 6 2.0089 -1.2006 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3348 -2.3681 -0.0005 10 6 2.0697 -3.5037 0.1056 11 6 3.4558 -3.4403 0.0912 12 6 4.2021 -4.5973 0.1999 13 6 3.5744 -5.8249 0.3242 14 6 2.1964 -5.9033 0.3400 15 6 1.4329 -4.7436 0.2312 16 6 -0.0480 -4.8223 0.2482 17 6 -0.7892 -4.0021 1.1057 18 7 -2.1016 -4.0538 1.1301 19 6 -2.7821 -4.8888 0.3564 20 7 -4.1213 -5.1441 0.1910 21 1 -4.8543 -4.7140 0.6585 22 7 -4.2244 -6.1467 -0.7836 23 7 -3.0477 -6.4799 -1.1831 24 6 -2.1126 -5.7522 -0.5301 25 6 -0.7136 -5.7163 -0.5843 26 1 -0.4849 0.8401 0.0004 27 1 3.9513 -2.4854 -0.0042 28 1 5.2808 -4.5436 0.1929 29 1 4.1652 -6.7250 0.4091 30 1 1.7108 -6.8630 0.4376 31 1 -0.2734 -3.3110 1.7559 32 1 -0.1669 -6.3648 -1.2528 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584147.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = 122.664369 kcal Electronic energy + Delta-G solvation = -20790.488908 eV Core-core repulsion = 17526.076306 eV Total energy + Delta-G solvation = -3264.412602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.97325 -39.46156 -38.03606 -36.50346 -33.83025 -32.47342 -32.02785 -30.80233 -29.30167 -28.24530 -25.51890 -24.54043 -23.46947 -22.36318 -21.54582 -20.90965 -18.31846 -18.08269 -17.97889 -16.75978 -16.16992 -15.74860 -15.12914 -14.65787 -14.54754 -13.94030 -13.73447 -13.63260 -12.96608 -12.81572 -12.58434 -12.54237 -12.29331 -11.81659 -11.67721 -11.50533 -11.22328 -10.97419 -10.91353 -10.86713 -10.54957 -9.57180 -9.27328 -8.99857 -8.93582 -8.84971 -8.00947 -7.30687 -6.57342 -4.16782 0.55216 1.22384 2.09628 2.23458 2.30371 2.39577 3.06827 3.07355 3.10669 3.85028 3.92784 4.14179 4.40618 4.63323 4.67722 4.95767 5.02686 5.11027 5.22371 5.36465 5.53001 5.69004 5.84592 5.98129 6.00838 6.10771 6.37080 6.53312 6.61611 6.68046 6.93051 6.98059 7.07932 7.21366 7.24956 7.62527 7.85053 7.91408 8.09959 8.87147 9.51120 10.58493 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.006231 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.599164 B = 4492.933386 C = 6156.237629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.044 3.956 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.396 4.396 8 H 0.094 0.906 9 O -0.166 6.166 10 C 0.166 3.834 11 C -0.230 4.230 12 C -0.064 4.064 13 C -0.214 4.214 14 C -0.054 4.054 15 C -0.137 4.137 16 C -0.069 4.069 17 C 0.228 3.772 18 N -0.490 5.490 19 C 0.273 3.727 20 N -0.490 5.490 21 H 0.448 0.552 22 N -0.004 5.004 23 N -0.207 5.207 24 C -0.067 4.067 25 C 0.002 3.998 26 H 0.272 0.728 27 H 0.131 0.869 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.178 0.822 32 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -7.600 2.062 7.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.472 4.472 8 H 0.111 0.889 9 O -0.068 6.068 10 C 0.111 3.889 11 C -0.249 4.249 12 C -0.083 4.083 13 C -0.233 4.233 14 C -0.072 4.072 15 C -0.140 4.140 16 C -0.075 4.075 17 C 0.056 3.944 18 N -0.203 5.203 19 C 0.030 3.970 20 N -0.217 5.217 21 H 0.295 0.705 22 N 0.013 4.987 23 N -0.088 5.088 24 C -0.193 4.193 25 C -0.028 4.028 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.195 0.805 32 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.147 -7.768 1.717 8.038 hybrid contribution 1.114 1.364 0.218 1.774 sum -0.033 -6.404 1.934 6.690 Atomic orbital electron populations 1.70023 1.05873 1.28077 1.44596 1.25280 0.95835 0.98824 0.96241 0.85793 0.78770 0.79737 0.79264 1.19482 1.20273 1.19375 1.21288 0.91878 0.80544 1.53501 0.88903 1.83942 1.34306 1.11390 1.77201 1.19268 0.90168 0.87227 0.92240 1.21125 0.93380 0.99263 1.11166 1.20866 0.98706 0.92341 0.96348 1.20543 0.94076 0.97148 1.11504 1.20725 0.93541 0.95817 0.97153 1.17464 0.89430 0.91602 1.15471 1.19416 0.94071 0.96836 0.97143 1.23178 0.86296 0.92103 0.92850 1.66730 1.09570 1.20251 1.23786 1.19557 0.86152 0.95389 0.95935 1.47383 1.05291 1.33803 1.35226 0.70463 1.81545 1.15625 1.00871 1.00636 1.74714 0.95667 1.19372 1.19005 1.20352 0.95612 1.01440 1.01895 1.20906 0.89128 0.96736 0.95993 0.91771 0.85171 0.87263 0.87251 0.86671 0.80464 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.33 13.67 55.48 0.76 -22.57 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.29 29.55 -169.99 -5.02 14.27 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.40 -10.06 9.49 30.88 0.29 -9.76 16 8 H 0.09 2.17 5.21 -52.49 -0.27 1.90 16 9 O -0.17 -4.18 8.14 0.33 0.00 -4.18 16 10 C 0.17 3.55 6.56 -38.75 -0.25 3.30 16 11 C -0.23 -4.45 9.16 -39.44 -0.36 -4.81 16 12 C -0.06 -1.04 10.03 -39.56 -0.40 -1.44 16 13 C -0.21 -3.25 10.03 -39.58 -0.40 -3.64 16 14 C -0.05 -0.85 9.53 -39.27 -0.37 -1.23 16 15 C -0.14 -2.56 5.50 -104.73 -0.58 -3.14 16 16 C -0.07 -1.27 5.28 -104.80 -0.55 -1.82 16 17 C 0.23 4.40 9.95 -17.13 -0.17 4.23 16 18 N -0.49 -9.38 10.37 -12.06 -0.13 -9.50 16 19 C 0.27 4.90 8.49 -155.84 -1.32 3.58 16 20 N -0.49 -7.35 7.54 31.15 0.23 -7.11 16 21 H 0.45 5.05 8.96 -182.52 -1.64 3.41 16 22 N 0.00 -0.07 13.82 60.35 0.83 0.76 16 23 N -0.21 -3.60 12.40 32.17 0.40 -3.20 16 24 C -0.07 -1.20 7.28 -84.73 -0.62 -1.82 16 25 C 0.00 0.04 9.70 -38.58 -0.37 -0.33 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.13 2.51 5.64 -52.49 -0.30 2.22 16 28 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.52 8.04 -52.49 -0.42 1.10 16 31 H 0.18 3.51 7.70 -52.49 -0.40 3.11 16 32 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 291.32 15.07 4.39 4.39 Total: -1.00 -28.99 291.32 -7.16 -36.15 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.43 Total: 6.85 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -5.20 Total: -15.86 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 2.10 Total: -41.63 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: 0.00 Total: -4.18 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.99 -7.16 -36.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584147.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.819 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds