Wall clock time and date at job start Tue Mar 31 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48495 * 109.47318 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47195 * 300.00092 * 3 2 1 6 6 H 1.48508 * 109.47135 * 59.99860 * 3 2 1 7 7 C 1.38648 * 119.99678 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99686 * 180.02562 * 7 2 1 9 9 O 1.34810 * 119.99803 * 0.02562 * 7 2 1 10 10 C 1.35676 * 116.99696 * 185.05623 * 9 7 2 11 11 C 1.38752 * 120.13611 * 354.40912 * 10 9 7 12 12 C 1.38121 * 120.04904 * 180.29145 * 11 10 9 13 13 C 1.38437 * 120.31872 * 359.72466 * 12 11 10 14 14 C 1.38021 * 120.26725 * 359.97438 * 13 12 11 15 15 C 1.39266 * 119.94620 * 0.02562 * 14 13 12 16 16 C 1.48345 * 120.15794 * 180.02562 * 15 14 13 17 17 C 1.41062 * 120.51452 * 129.99848 * 16 15 14 18 18 N 1.31174 * 120.16778 * 179.97438 * 17 16 15 19 19 C 1.33893 * 121.04888 * 0.02562 * 18 17 16 20 20 N 1.32853 * 132.30049 * 179.97438 * 19 18 17 21 21 C 1.32611 * 109.77258 * 179.97438 * 20 19 18 22 22 N 1.31185 * 109.62391 * 359.97438 * 21 20 19 23 23 N 1.36655 * 120.50690 * 359.97438 * 19 18 17 24 24 C 1.35873 * 120.39850 * 359.97438 * 23 19 18 25 25 H 0.97003 * 119.99890 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.97511 * 0.02562 * 11 10 9 27 27 H 1.07998 * 119.84087 * 179.74577 * 12 11 10 28 28 H 1.08001 * 119.86696 * 179.97438 * 13 12 11 29 29 H 1.07996 * 120.03167 * 180.02562 * 14 13 12 30 30 H 1.08000 * 119.91991 * 359.70147 * 17 16 15 31 31 H 1.07999 * 125.19191 * 179.97438 * 21 20 19 32 32 H 1.08005 * 120.54698 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7097 1.3463 0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0695 -3.5037 0.1076 11 6 3.4555 -3.4405 0.0942 12 6 4.2017 -4.5981 0.1973 13 6 3.5737 -5.8258 0.3201 14 6 2.1959 -5.9033 0.3412 15 6 1.4326 -4.7430 0.2380 16 6 -0.0486 -4.8209 0.2607 17 6 -0.7962 -3.9933 1.1245 18 7 -2.1058 -4.0675 1.1386 19 6 -2.7577 -4.9229 0.3411 20 7 -4.0500 -5.1814 0.1736 21 6 -4.2033 -6.1254 -0.7451 22 7 -3.0283 -6.4993 -1.1928 23 7 -2.0686 -5.7410 -0.5094 24 6 -0.7114 -5.6965 -0.5573 25 1 -0.4850 0.8401 0.0004 26 1 3.9512 -2.4857 -0.0013 27 1 5.2803 -4.5454 0.1823 28 1 4.1644 -6.7264 0.3998 29 1 1.7099 -6.8630 0.4376 30 1 -0.2890 -3.3000 1.7790 31 1 -5.1509 -6.5253 -1.0745 32 1 -0.1644 -6.3422 -1.2283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243584209.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:49 Heat of formation + Delta-G solvation = 139.829302 kcal Electronic energy + Delta-G solvation = -20882.189744 eV Core-core repulsion = 17618.521470 eV Total energy + Delta-G solvation = -3263.668274 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.55270 -39.60077 -38.18600 -36.62967 -34.23404 -32.66313 -32.28186 -30.45755 -29.41589 -28.44281 -25.62188 -24.79378 -23.89245 -21.96406 -21.71132 -21.20959 -18.23718 -18.08395 -17.86003 -17.02581 -16.23161 -15.86479 -14.97398 -14.77135 -14.65269 -14.34369 -13.94776 -13.82433 -13.33319 -12.90297 -12.88804 -12.49688 -12.39268 -11.88058 -11.75700 -11.54015 -11.09468 -11.07159 -10.98351 -10.56093 -9.96718 -9.77030 -9.58282 -9.44235 -9.04109 -8.70644 -8.14064 -7.44310 -6.64737 -4.24765 0.72980 0.94363 1.84117 2.09552 2.20488 2.83954 3.02441 3.03895 3.09911 3.65474 3.77471 3.80970 4.21123 4.30266 4.60890 4.83689 4.91497 4.93781 5.12405 5.35422 5.42007 5.57745 5.64568 5.84934 6.03680 6.21452 6.31588 6.38238 6.42155 6.48933 6.59608 6.82090 6.93155 7.09290 7.15555 7.50018 7.76990 7.78269 8.18126 8.79221 9.40112 10.50766 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.014766 B = 0.006284 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.814782 B = 4454.797196 C = 6093.363894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.398 4.398 8 H 0.096 0.904 9 O -0.165 6.165 10 C 0.169 3.831 11 C -0.228 4.228 12 C -0.060 4.060 13 C -0.213 4.213 14 C -0.052 4.052 15 C -0.140 4.140 16 C -0.088 4.088 17 C 0.250 3.750 18 N -0.456 5.456 19 C 0.439 3.561 20 N -0.537 5.537 21 C 0.242 3.758 22 N -0.352 5.352 23 N -0.318 5.318 24 C 0.145 3.855 25 H 0.274 0.726 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.192 0.808 31 H 0.227 0.773 32 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -9.020 0.167 9.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.473 4.473 8 H 0.114 0.886 9 O -0.067 6.067 10 C 0.113 3.887 11 C -0.247 4.247 12 C -0.078 4.078 13 C -0.232 4.232 14 C -0.070 4.070 15 C -0.143 4.143 16 C -0.095 4.095 17 C 0.065 3.935 18 N -0.169 5.169 19 C 0.080 3.920 20 N -0.271 5.271 21 C -0.060 4.060 22 N -0.185 5.185 23 N -0.096 5.096 24 C 0.008 3.992 25 H 0.084 0.916 26 H 0.150 0.850 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.133 0.867 30 H 0.209 0.791 31 H 0.243 0.757 32 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.827 -8.749 0.231 8.941 hybrid contribution 1.171 0.486 -0.629 1.415 sum 2.998 -8.263 -0.397 8.799 Atomic orbital electron populations 1.70033 1.05910 1.28227 1.43884 1.25332 0.95874 0.98965 0.96067 0.85628 0.79130 0.80134 0.78467 1.18991 1.20085 1.19914 1.21407 0.91991 0.80325 1.53599 0.88619 1.83928 1.34551 1.11550 1.76644 1.19208 0.90214 0.87062 0.92222 1.21141 0.93251 0.99385 1.10904 1.20907 0.98854 0.92272 0.95780 1.20537 0.93956 0.97262 1.11487 1.20706 0.93694 0.95597 0.97033 1.17198 0.88068 0.91948 1.17100 1.19213 0.95185 0.97197 0.97874 1.23848 0.86974 0.91066 0.91620 1.68055 1.09994 1.17708 1.21175 1.22929 0.89307 0.90127 0.89677 1.70816 1.11576 1.21161 1.23537 1.26131 0.97383 0.91533 0.90905 1.78427 0.97040 1.20647 1.22425 1.48573 1.06868 1.26808 1.27304 1.22087 0.79351 0.99377 0.98386 0.91591 0.84959 0.87071 0.87086 0.86713 0.79090 0.75682 0.80489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.96 13.67 55.48 0.76 -22.20 16 2 C 0.04 1.11 5.49 -17.51 -0.10 1.01 16 3 Si 0.94 18.95 29.55 -169.99 -5.02 13.93 16 4 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.40 -9.80 9.49 30.88 0.29 -9.51 16 8 H 0.10 2.17 5.21 -52.49 -0.27 1.90 16 9 O -0.16 -4.01 8.18 0.33 0.00 -4.01 16 10 C 0.17 3.43 6.57 -38.75 -0.25 3.17 16 11 C -0.23 -4.17 9.16 -39.43 -0.36 -4.53 16 12 C -0.06 -0.91 10.03 -39.55 -0.40 -1.30 16 13 C -0.21 -3.02 10.03 -39.59 -0.40 -3.41 16 14 C -0.05 -0.76 9.51 -39.28 -0.37 -1.13 16 15 C -0.14 -2.45 5.50 -104.72 -0.58 -3.02 16 16 C -0.09 -1.54 5.24 -105.14 -0.55 -2.09 16 17 C 0.25 4.80 10.05 -16.76 -0.17 4.63 16 18 N -0.46 -9.47 10.46 -13.57 -0.14 -9.61 16 19 C 0.44 8.94 8.99 -323.02 -2.90 6.03 16 20 N -0.54 -10.40 11.25 -15.64 -0.18 -10.58 16 21 C 0.24 3.78 12.98 -91.97 -1.19 2.59 16 22 N -0.35 -6.04 12.78 29.26 0.37 -5.66 16 23 N -0.32 -5.85 3.90 -13.57 -0.05 -5.90 16 24 C 0.14 2.38 10.79 -16.24 -0.18 2.20 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.13 2.44 5.64 -52.48 -0.30 2.14 16 27 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.11 1.37 8.04 -52.49 -0.42 0.95 16 30 H 0.19 3.61 7.77 -52.49 -0.41 3.21 16 31 H 0.23 2.25 8.06 -52.49 -0.42 1.83 16 32 H 0.18 2.34 8.05 -52.48 -0.42 1.91 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -30.29 292.15 -9.24 -39.53 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -2.22 Total: 5.47 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -7.16 Total: -5.37 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.76 Total: -53.96 kcal Atomic # 8 Polarization: -4.01 SS G_CDS: 0.00 Total: -4.01 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.29 -9.24 -39.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243584209.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.357 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds