Wall clock time and date at job start Tue Mar 31 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86800 * 119.99634 * 2 1 4 4 H 1.48504 * 109.46865 * 239.99898 * 3 2 1 5 5 H 1.48500 * 109.47218 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47354 * 119.99929 * 3 2 1 7 7 C 1.38619 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00406 * 180.02562 * 7 2 1 9 9 O 1.34810 * 119.99946 * 0.02562 * 7 2 1 10 10 C 1.35601 * 116.99833 * 185.31152 * 9 7 2 11 11 C 1.38743 * 120.15700 * 5.92591 * 10 9 7 12 12 C 1.38112 * 120.07580 * 179.97438 * 11 10 9 13 13 C 1.38537 * 120.40023 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.31304 * 359.97438 * 13 12 11 15 15 C 1.39653 * 119.91510 * 0.02562 * 14 13 12 16 16 C 1.47508 * 120.19412 * 180.02562 * 15 14 13 17 17 C 1.36599 * 120.31090 * 130.28029 * 16 15 14 18 18 N 1.33133 * 121.12196 * 179.79078 * 17 16 15 19 19 C 1.31320 * 121.58673 * 0.46814 * 18 17 16 20 20 C 1.40700 * 119.90004 * 359.77556 * 19 18 17 21 21 N 1.32104 * 134.32362 * 179.97438 * 20 19 18 22 22 N 1.28776 * 109.31794 * 180.02562 * 21 20 19 23 23 C 1.31058 * 110.22108 * 0.02562 * 22 21 20 24 24 N 1.34793 * 107.62416 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00643 * 0.02562 * 1 2 3 26 26 H 1.07995 * 119.96223 * 359.97438 * 11 10 9 27 27 H 1.07995 * 119.79645 * 180.27096 * 12 11 10 28 28 H 1.07995 * 119.84409 * 179.97438 * 13 12 11 29 29 H 1.08003 * 120.04190 * 180.02562 * 14 13 12 30 30 H 1.07997 * 119.44072 * 359.97438 * 17 16 15 31 31 H 1.08000 * 120.04640 * 179.75008 * 19 18 17 32 32 H 1.08005 * 126.19162 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0088 -1.2004 0.0005 8 1 3.0889 -1.2005 0.0010 9 8 1.3348 -2.3680 0.0005 10 6 2.0689 -3.5025 0.1129 11 6 3.4349 -3.4288 0.3444 12 6 4.1809 -4.5855 0.4591 13 6 3.5739 -5.8255 0.3439 14 6 2.2175 -5.9177 0.1139 15 6 1.4506 -4.7565 -0.0043 16 6 -0.0010 -4.8480 -0.2499 17 6 -0.8767 -4.1383 0.5217 18 7 -2.1897 -4.2056 0.3116 19 6 -2.6969 -4.9605 -0.6357 20 6 -1.8451 -5.7187 -1.4598 21 7 -2.0364 -6.5503 -2.4683 22 7 -0.8978 -6.9872 -2.8821 23 6 0.0725 -6.4672 -2.1709 24 7 -0.4854 -5.6527 -1.2532 25 1 -0.4851 0.8400 -0.0004 26 1 3.9154 -2.4659 0.4350 27 1 5.2431 -4.5229 0.6436 28 1 4.1659 -6.7241 0.4347 29 1 1.7488 -6.8866 0.0252 30 1 -0.4975 -3.5096 1.3136 31 1 -3.7662 -4.9995 -0.7817 32 1 1.1283 -6.6564 -2.2978 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243587547.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:00 Heat of formation + Delta-G solvation = 124.404346 kcal Electronic energy + Delta-G solvation = -21240.423883 eV Core-core repulsion = 17976.086733 eV Total energy + Delta-G solvation = -3264.337151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.46707 -39.66723 -38.53299 -36.81631 -34.64848 -32.67396 -31.82888 -30.57560 -29.64115 -28.49247 -25.74379 -24.86736 -23.74634 -22.80749 -21.91028 -20.89426 -18.49145 -18.36823 -17.82158 -17.11547 -16.43929 -15.88882 -15.42490 -14.87663 -14.80286 -14.47027 -14.11432 -13.91805 -13.38216 -12.99778 -12.86958 -12.78226 -11.96477 -11.92512 -11.64339 -11.52704 -11.27383 -11.12602 -11.07546 -10.66648 -10.59225 -9.90500 -9.69407 -9.60592 -9.13833 -8.79451 -7.97638 -7.45005 -6.75234 -4.34852 0.52835 1.34510 1.66582 1.98876 2.47759 2.90327 2.96662 2.97503 3.01647 3.69003 3.72796 4.16968 4.20018 4.40922 4.47872 4.71821 4.80458 4.80990 4.99876 5.24212 5.35251 5.46269 5.74026 5.77381 5.84353 5.98323 6.10767 6.26067 6.33459 6.41376 6.67076 6.79139 6.89400 6.98537 7.04421 7.36528 7.65458 7.92465 8.59567 8.67379 9.26666 10.39507 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.016103 B = 0.006604 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.416008 B = 4238.622035 C = 5456.001006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.046 3.954 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.399 4.399 8 H 0.097 0.903 9 O -0.155 6.155 10 C 0.176 3.824 11 C -0.225 4.225 12 C -0.053 4.053 13 C -0.212 4.212 14 C -0.048 4.048 15 C -0.168 4.168 16 C 0.135 3.865 17 C 0.069 3.931 18 N -0.430 5.430 19 C 0.163 3.837 20 C 0.136 3.864 21 N -0.275 5.275 22 N -0.258 5.258 23 C 0.126 3.874 24 N -0.366 5.366 25 H 0.277 0.723 26 H 0.136 0.864 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.185 0.815 31 H 0.189 0.811 32 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -6.665 1.723 7.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.162 4.162 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.474 4.474 8 H 0.114 0.886 9 O -0.056 6.056 10 C 0.118 3.882 11 C -0.244 4.244 12 C -0.071 4.071 13 C -0.231 4.231 14 C -0.067 4.067 15 C -0.172 4.172 16 C 0.030 3.970 17 C -0.071 4.071 18 N -0.140 5.140 19 C -0.021 4.021 20 C -0.115 4.115 21 N -0.125 5.125 22 N -0.100 5.100 23 C -0.157 4.157 24 N -0.046 5.046 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.201 0.799 31 H 0.205 0.795 32 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.059 -6.754 1.173 7.157 hybrid contribution 1.934 1.158 0.350 2.282 sum 3.993 -5.596 1.523 7.041 Atomic orbital electron populations 1.70018 1.05980 1.28650 1.42723 1.25368 0.95934 0.99083 0.95802 0.85730 0.78832 0.79271 0.79429 1.19300 1.19973 1.19169 1.21371 0.92029 0.80318 1.53693 0.88603 1.83943 1.34534 1.11613 1.75491 1.19180 0.90345 0.86680 0.91974 1.21159 0.93585 0.99518 1.10156 1.20980 0.98902 0.92147 0.95100 1.20529 0.94233 0.97260 1.11127 1.20756 0.93808 0.95519 0.96573 1.17220 0.88692 0.92027 1.19217 1.19702 0.94909 0.93530 0.88890 1.22446 0.86521 0.98148 1.00001 1.68040 1.14589 1.14906 1.16507 1.22732 0.99943 0.90492 0.88913 1.23625 0.83290 1.03684 1.00922 1.74836 1.17184 1.11566 1.08925 1.74346 0.94602 1.19906 1.21123 1.26203 1.02089 0.96305 0.91152 1.44007 1.08977 1.29260 1.22352 0.91318 0.84685 0.86726 0.86758 0.86894 0.79863 0.79457 0.76134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.50 13.67 55.48 0.76 -21.74 16 2 C 0.05 1.14 5.49 -17.52 -0.10 1.04 16 3 Si 0.94 18.69 29.55 -169.99 -5.02 13.67 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.40 -9.87 9.44 30.87 0.29 -9.58 16 8 H 0.10 2.16 5.30 -52.48 -0.28 1.89 16 9 O -0.16 -3.84 8.06 0.56 0.00 -3.83 16 10 C 0.18 3.67 6.53 -38.62 -0.25 3.41 16 11 C -0.23 -4.15 9.12 -39.44 -0.36 -4.51 16 12 C -0.05 -0.80 10.03 -39.52 -0.40 -1.20 16 13 C -0.21 -3.05 10.03 -39.60 -0.40 -3.45 16 14 C -0.05 -0.74 8.71 -39.18 -0.34 -1.08 16 15 C -0.17 -3.12 5.41 -104.81 -0.57 -3.69 16 16 C 0.14 2.57 6.13 -82.17 -0.50 2.06 16 17 C 0.07 1.35 9.83 -17.58 -0.17 1.17 16 18 N -0.43 -7.95 10.40 -12.85 -0.13 -8.09 16 19 C 0.16 2.67 11.32 -16.84 -0.19 2.48 16 20 C 0.14 2.45 7.95 -155.94 -1.24 1.21 16 21 N -0.27 -5.15 12.31 31.15 0.38 -4.77 16 22 N -0.26 -4.70 12.21 29.65 0.36 -4.34 16 23 C 0.13 2.09 11.86 -90.13 -1.07 1.02 16 24 N -0.37 -6.64 2.97 -60.44 -0.18 -6.82 16 25 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.14 2.47 5.71 -52.49 -0.30 2.17 16 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 29 H 0.11 1.53 7.75 -52.48 -0.41 1.12 16 30 H 0.18 3.72 7.57 -52.49 -0.40 3.32 16 31 H 0.19 2.29 8.06 -52.49 -0.42 1.87 16 32 H 0.22 2.91 7.58 -52.48 -0.40 2.51 16 LS Contribution 288.76 15.07 4.35 4.35 Total: -1.00 -28.90 288.76 -6.96 -35.86 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -2.18 Total: 6.81 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -5.30 Total: -11.09 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 1.19 Total: -45.76 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: 0.00 Total: -3.83 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.90 -6.96 -35.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243587547.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.260 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds