Wall clock time and date at job start Tue Mar 31 2020 06:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86805 * 119.99827 * 2 1 4 4 H 1.48496 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47193 * 300.00465 * 3 2 1 6 6 H 1.48500 * 109.46898 * 60.00448 * 3 2 1 7 7 C 1.38712 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00152 * 179.97438 * 7 2 1 9 9 O 1.34793 * 120.00137 * 359.97438 * 7 2 1 10 10 C 1.35583 * 117.00296 * 185.06052 * 9 7 2 11 11 C 1.39146 * 119.91883 * 354.44246 * 10 9 7 12 12 C 1.37657 * 120.08000 * 180.02562 * 11 10 9 13 13 C 1.39806 * 119.91680 * 0.02562 * 12 11 10 14 14 C 1.47626 * 120.07557 * 180.02562 * 13 12 11 15 15 N 1.33817 * 120.45495 * 324.97547 * 14 13 12 16 16 C 1.30782 * 121.94917 * 180.02562 * 15 14 13 17 17 N 1.34351 * 122.43833 * 359.75256 * 16 15 14 18 18 H 0.97001 * 120.08710 * 180.02562 * 17 16 15 19 19 C 1.37326 * 119.81613 * 0.48674 * 17 16 15 20 20 N 1.32440 * 135.17585 * 179.85158 * 19 17 16 21 21 C 1.32827 * 108.72171 * 179.71307 * 20 19 17 22 22 N 1.31668 * 110.24880 * 359.97438 * 21 20 19 23 23 C 1.34204 * 108.21754 * 0.02562 * 22 21 20 24 24 C 1.39803 * 119.84322 * 0.27107 * 13 12 11 25 25 C 1.37660 * 119.91886 * 359.43068 * 24 13 12 26 26 H 0.96999 * 120.00230 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.95802 * 359.97438 * 11 10 9 28 28 H 1.08000 * 120.03913 * 180.02562 * 12 11 10 29 29 H 1.08000 * 118.78072 * 179.97438 * 16 15 14 30 30 H 1.08007 * 124.87833 * 180.02562 * 21 20 19 31 31 H 1.08000 * 120.03461 * 179.72383 * 24 13 12 32 32 H 1.07995 * 119.95543 * 180.29564 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0087 -1.2012 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3348 -2.3686 -0.0005 10 6 2.0692 -3.5034 0.1055 11 6 3.4589 -3.4345 0.0912 12 6 4.2078 -4.5846 0.1981 13 6 3.5704 -5.8229 0.3206 14 6 4.3701 -7.0584 0.4360 15 7 5.5285 -7.1806 -0.2228 16 6 6.2598 -8.2618 -0.1420 17 7 5.9039 -9.3182 0.6079 18 1 6.4728 -10.1031 0.6433 19 6 4.7281 -9.2874 1.3166 20 7 4.0956 -10.1254 2.1239 21 6 2.9715 -9.5518 2.5381 22 7 2.8546 -8.3487 2.0160 23 6 3.9253 -8.1226 1.2391 24 6 2.1740 -5.8888 0.3283 25 6 1.4315 -4.7340 0.2271 26 1 -0.4850 0.8400 0.0004 27 1 3.9505 -2.4777 -0.0046 28 1 5.2864 -4.5304 0.1874 29 1 7.1860 -8.3057 -0.6959 30 1 2.2563 -10.0065 3.2076 31 1 1.6784 -6.8441 0.4182 32 1 0.3528 -4.7838 0.2378 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588680.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:46 Heat of formation + Delta-G solvation = 113.502398 kcal Electronic energy + Delta-G solvation = -20231.239823 eV Core-core repulsion = 16966.429928 eV Total energy + Delta-G solvation = -3264.809895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25083 -39.37524 -39.08904 -36.95309 -34.84333 -32.58419 -31.08707 -30.52635 -30.21582 -28.49145 -25.82965 -24.58672 -23.68924 -21.90798 -21.70874 -20.79886 -18.52171 -18.11411 -17.68059 -17.25035 -17.01536 -15.85045 -15.48100 -14.72876 -14.66090 -14.28585 -13.85875 -13.69632 -13.59019 -13.35389 -12.88003 -12.68905 -12.11783 -11.88107 -11.45607 -11.33834 -10.90435 -10.81805 -10.70740 -10.56854 -10.06410 -9.54074 -9.27179 -9.09822 -8.86989 -8.44324 -8.33672 -7.24182 -6.72040 -4.23163 -0.19154 1.47428 2.14788 2.18589 2.20723 3.00645 3.02023 3.08214 3.47242 3.66940 3.74863 3.77956 4.18234 4.36374 4.53763 4.73404 4.88484 4.93373 5.06163 5.41353 5.56877 5.60385 5.76774 6.07162 6.24500 6.26878 6.53555 6.58250 6.76779 6.84259 7.06070 7.12705 7.16034 7.22791 7.25565 7.56441 7.62383 7.74249 8.49921 8.72074 9.39166 10.43944 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034615 B = 0.003612 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.707681 B = 7751.130899 C = 8338.810286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.041 3.959 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.388 4.388 8 H 0.101 0.899 9 O -0.155 6.155 10 C 0.175 3.825 11 C -0.247 4.247 12 C -0.009 4.009 13 C -0.188 4.188 14 C 0.356 3.644 15 N -0.526 5.526 16 C 0.367 3.633 17 N -0.533 5.533 18 H 0.422 0.578 19 C 0.211 3.789 20 N -0.554 5.554 21 C 0.206 3.794 22 N -0.496 5.496 23 C -0.066 4.066 24 C -0.005 4.005 25 C -0.201 4.201 26 H 0.276 0.724 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.220 0.780 30 H 0.199 0.801 31 H 0.127 0.873 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 -12.365 -1.405 17.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.166 4.166 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.464 4.464 8 H 0.118 0.882 9 O -0.054 6.054 10 C 0.117 3.883 11 C -0.267 4.267 12 C -0.028 4.028 13 C -0.191 4.191 14 C 0.224 3.776 15 N -0.247 5.247 16 C 0.083 3.917 17 N -0.138 5.138 18 H 0.259 0.741 19 C -0.042 4.042 20 N -0.281 5.281 21 C -0.085 4.085 22 N -0.216 5.216 23 C -0.200 4.200 24 C -0.025 4.025 25 C -0.221 4.221 26 H 0.086 0.914 27 H 0.151 0.849 28 H 0.136 0.864 29 H 0.236 0.764 30 H 0.216 0.784 31 H 0.145 0.855 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 11.888 -11.696 -1.411 16.737 hybrid contribution 0.889 -0.179 0.264 0.944 sum 12.777 -11.875 -1.147 17.481 Atomic orbital electron populations 1.70023 1.06224 1.28433 1.42963 1.25455 0.95937 0.99311 0.95891 0.85548 0.79266 0.79578 0.78544 1.18735 1.19829 1.19811 1.21627 0.92310 0.80486 1.51957 0.88194 1.83905 1.35252 1.11940 1.74296 1.19641 0.90345 0.87728 0.90585 1.21069 0.93517 0.99074 1.13009 1.20837 0.98788 0.90763 0.92427 1.17809 0.92434 0.89727 1.19105 1.19914 0.85938 0.90545 0.81227 1.68447 1.08176 1.22109 1.25990 1.25117 0.97839 0.81077 0.87694 1.41983 1.17926 1.18125 1.35778 0.74090 1.20283 0.89097 0.95808 0.99023 1.70176 1.09638 1.32166 1.16084 1.25172 0.93782 0.89428 1.00086 1.70702 1.21834 1.17555 1.11495 1.20732 0.97411 0.95918 1.05937 1.20835 0.91672 0.97751 0.92197 1.20136 0.99974 0.89706 1.12252 0.91434 0.84876 0.86417 0.76376 0.78446 0.85535 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.32 13.67 55.48 0.76 -22.56 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.95 19.12 29.55 -169.99 -5.02 14.10 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.39 -10.16 9.48 30.91 0.29 -9.86 16 8 H 0.10 2.39 5.19 -52.48 -0.27 2.11 16 9 O -0.15 -4.17 9.75 0.67 0.01 -4.16 16 10 C 0.17 4.05 6.66 -38.91 -0.26 3.79 16 11 C -0.25 -5.12 9.15 -39.46 -0.36 -5.48 16 12 C -0.01 -0.16 9.60 -39.21 -0.38 -0.54 16 13 C -0.19 -3.50 5.75 -104.89 -0.60 -4.10 16 14 C 0.36 5.90 6.52 -82.30 -0.54 5.36 16 15 N -0.53 -6.72 10.01 -10.59 -0.11 -6.83 16 16 C 0.37 2.80 12.30 -90.77 -1.12 1.68 16 17 N -0.53 -4.71 5.34 -13.35 -0.07 -4.78 16 18 H 0.42 2.00 8.93 -40.82 -0.36 1.63 16 19 C 0.21 3.16 8.54 -155.62 -1.33 1.83 16 20 N -0.55 -9.08 11.32 -13.48 -0.15 -9.23 16 21 C 0.21 3.41 12.89 -91.37 -1.18 2.23 16 22 N -0.50 -9.29 10.24 -12.31 -0.13 -9.42 16 23 C -0.07 -1.15 6.64 -84.65 -0.56 -1.71 16 24 C 0.00 -0.10 9.23 -39.21 -0.36 -0.46 16 25 C -0.20 -4.24 9.97 -39.46 -0.39 -4.64 16 26 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 28 H 0.12 1.86 7.98 -52.49 -0.42 1.44 16 29 H 0.22 0.25 8.06 -52.49 -0.42 -0.17 16 30 H 0.20 2.54 8.06 -52.48 -0.42 2.12 16 31 H 0.13 2.38 7.02 -52.49 -0.37 2.01 16 32 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 290.62 15.07 4.38 4.38 Total: -1.00 -34.59 290.62 -9.34 -43.93 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -2.12 Total: 5.51 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -6.88 Total: -10.93 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: 0.30 Total: -52.82 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: 0.01 Total: -4.16 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.59 -9.34 -43.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588680.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.429 kcal (2) G-P(sol) polarization free energy of solvation -34.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds