Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31574 * 1 3 3 Si 1.86806 * 119.99738 * 2 1 4 4 H 1.48493 * 109.47310 * 270.00113 * 3 2 1 5 5 H 1.48503 * 109.47166 * 30.00386 * 3 2 1 6 6 H 1.48499 * 109.46918 * 149.99692 * 3 2 1 7 7 C 1.38621 * 120.00565 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99537 * 359.97438 * 7 2 1 9 9 O 1.34811 * 120.00392 * 180.02562 * 7 2 1 10 10 C 1.35648 * 116.99977 * 185.07868 * 9 7 2 11 11 C 1.38735 * 120.14218 * 354.39137 * 10 9 7 12 12 C 1.38126 * 120.06049 * 179.97438 * 11 10 9 13 13 C 1.38471 * 120.35107 * 0.02562 * 12 11 10 14 14 C 1.37967 * 120.29259 * 0.02562 * 13 12 11 15 15 C 1.39431 * 119.92861 * 359.97438 * 14 13 12 16 16 C 1.48019 * 120.17607 * 179.97438 * 15 14 13 17 17 C 1.38440 * 121.26835 * 65.01909 * 16 15 14 18 18 N 1.33387 * 120.04739 * 179.97438 * 17 16 15 19 19 C 1.30289 * 122.91369 * 0.02562 * 18 17 16 20 20 N 1.35846 * 122.00486 * 359.97438 * 19 18 17 21 21 C 1.35997 * 134.75120 * 179.97438 * 20 19 18 22 22 N 1.30807 * 107.47676 * 180.02562 * 21 20 19 23 23 N 1.28790 * 110.31479 * 359.97438 * 22 21 20 24 24 C 1.31475 * 109.49483 * 359.71690 * 23 22 21 25 25 H 0.96992 * 120.00346 * 359.97438 * 1 2 3 26 26 H 1.08003 * 119.97311 * 359.96085 * 11 10 9 27 27 H 1.07996 * 119.82025 * 179.72224 * 12 11 10 28 28 H 1.07999 * 119.85458 * 179.97438 * 13 12 11 29 29 H 1.07995 * 120.03672 * 180.02562 * 14 13 12 30 30 H 1.08009 * 119.97702 * 359.97438 * 17 16 15 31 31 H 1.08002 * 118.99322 * 179.97438 * 19 18 17 32 32 H 1.08005 * 126.25765 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4972 2.0466 -1.4000 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4403 0.7001 7 6 2.0090 -1.2004 -0.0005 8 1 1.4690 -2.1358 -0.0005 9 8 3.3571 -1.2004 0.0000 10 6 3.9730 -2.4042 -0.1076 11 6 3.2254 -3.5728 -0.0948 12 6 3.8543 -4.7977 -0.2050 13 6 5.2317 -4.8685 -0.3281 14 6 5.9893 -3.7155 -0.3414 15 6 5.3669 -2.4728 -0.2310 16 6 6.1745 -1.2324 -0.2441 17 6 6.8911 -0.8532 -1.3663 18 7 7.6105 0.2699 -1.3515 19 6 7.6799 1.0525 -0.3121 20 7 7.0175 0.7776 0.8416 21 6 6.9061 1.3898 2.0509 22 7 6.1190 0.6541 2.7927 23 7 5.7246 -0.3811 2.1358 24 6 6.2400 -0.3561 0.9265 25 1 -0.4850 0.8399 0.0004 26 1 2.1508 -3.5249 0.0016 27 1 3.2689 -5.7051 -0.1900 28 1 5.7151 -5.8305 -0.4133 29 1 7.0633 -3.7755 -0.4381 30 1 6.8675 -1.4673 -2.2545 31 1 8.2825 1.9469 -0.3696 32 1 7.3806 2.3145 2.3448 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588785.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = 129.167532 kcal Electronic energy + Delta-G solvation = -21476.028949 eV Core-core repulsion = 18211.898345 eV Total energy + Delta-G solvation = -3264.130603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -43.38855 -39.46755 -38.72857 -36.67327 -34.24939 -32.74353 -32.39861 -30.25644 -29.33871 -28.64721 -25.42279 -24.88213 -23.82900 -22.66384 -21.54152 -21.07614 -18.72550 -17.97191 -17.78183 -17.26570 -16.49098 -16.05431 -15.44062 -14.88761 -14.76838 -14.25707 -13.87074 -13.82762 -13.52454 -13.32853 -12.64566 -12.46054 -12.31078 -11.74838 -11.53982 -11.27845 -11.09997 -10.89570 -10.85947 -10.47942 -10.40932 -10.16799 -9.88737 -9.50509 -8.96636 -8.49814 -7.98765 -7.42520 -6.51339 -4.15389 0.43598 1.22965 1.82384 2.18348 2.33841 2.93655 3.14059 3.16382 3.32672 3.45793 3.92691 4.08398 4.15710 4.28817 4.38375 4.55707 4.68770 4.92126 5.00543 5.22022 5.46152 5.52158 5.63564 5.75493 5.93667 6.00380 6.09845 6.22156 6.39899 6.57378 6.71949 6.92167 7.03611 7.17734 7.47744 7.61885 7.68551 7.92795 8.69043 8.83978 9.44784 10.55901 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.010037 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.860359 B = 2789.071427 C = 4291.144157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.385 4.385 8 H 0.110 0.890 9 O -0.198 6.198 10 C 0.190 3.810 11 C -0.220 4.220 12 C -0.060 4.060 13 C -0.209 4.209 14 C -0.048 4.048 15 C -0.145 4.145 16 C 0.022 3.978 17 C 0.057 3.943 18 N -0.472 5.472 19 C 0.306 3.694 20 N -0.438 5.438 21 C 0.124 3.876 22 N -0.253 5.253 23 N -0.255 5.255 24 C 0.217 3.783 25 H 0.281 0.719 26 H 0.138 0.862 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.179 0.821 31 H 0.207 0.793 32 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.245 0.138 -2.057 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.134 4.134 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.460 4.460 8 H 0.127 0.873 9 O -0.101 6.101 10 C 0.135 3.865 11 C -0.239 4.239 12 C -0.078 4.078 13 C -0.228 4.228 14 C -0.066 4.066 15 C -0.147 4.147 16 C 0.016 3.984 17 C -0.082 4.082 18 N -0.183 5.183 19 C 0.023 3.977 20 N -0.127 5.127 21 C -0.161 4.161 22 N -0.092 5.092 23 N -0.098 5.098 24 C -0.037 4.037 25 H 0.091 0.909 26 H 0.155 0.845 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.134 0.866 30 H 0.196 0.804 31 H 0.224 0.776 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 14.626 0.159 -1.481 14.701 hybrid contribution 0.329 1.123 -0.311 1.211 sum 14.955 1.282 -1.792 15.116 Atomic orbital electron populations 1.69632 1.05442 1.28609 1.47148 1.24387 0.94935 0.98586 0.95457 0.86239 0.80594 0.81973 0.78544 1.20075 1.20486 1.18777 1.20786 0.76687 0.96736 1.51834 0.87261 1.83565 1.22741 1.25590 1.78234 1.18988 0.90201 0.85805 0.91483 1.21242 1.01306 0.91606 1.09713 1.20936 0.94370 0.96777 0.95758 1.20552 0.93945 0.97232 1.11039 1.20639 0.98419 0.90474 0.97090 1.17259 0.89657 0.90685 1.17142 1.19751 0.96499 0.93649 0.88486 1.22759 0.94886 0.93040 0.97524 1.67659 1.20389 1.06068 1.24225 1.24658 0.94217 0.99597 0.79240 1.45421 1.33892 1.20215 1.13138 1.26537 1.05039 1.03159 0.81324 1.74343 1.08687 1.00508 1.25648 1.74786 1.19722 1.14715 1.00593 1.23780 0.94587 0.88485 0.96854 0.90890 0.84488 0.86832 0.86904 0.86631 0.80422 0.77637 0.75484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.27 13.96 55.48 0.77 -24.50 16 2 C 0.07 2.01 5.49 -17.52 -0.10 1.92 16 3 Si 0.90 22.67 28.62 -169.99 -4.86 17.81 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.39 -10.85 9.94 30.87 0.31 -10.55 16 8 H 0.11 3.10 5.44 -52.49 -0.29 2.82 16 9 O -0.20 -5.24 7.88 0.42 0.00 -5.24 16 10 C 0.19 4.35 6.65 -38.70 -0.26 4.09 16 11 C -0.22 -4.63 9.16 -39.44 -0.36 -4.99 16 12 C -0.06 -1.04 10.03 -39.54 -0.40 -1.43 16 13 C -0.21 -3.29 10.03 -39.59 -0.40 -3.69 16 14 C -0.05 -0.79 9.75 -39.24 -0.38 -1.17 16 15 C -0.14 -2.84 5.45 -104.74 -0.57 -3.41 16 16 C 0.02 0.41 5.09 -102.54 -0.52 -0.11 16 17 C 0.06 0.88 11.00 -16.80 -0.18 0.69 16 18 N -0.47 -6.53 10.28 -13.77 -0.14 -6.67 16 19 C 0.31 3.69 12.19 -89.81 -1.10 2.59 16 20 N -0.44 -6.77 2.96 -63.71 -0.19 -6.96 16 21 C 0.12 1.77 13.01 -89.24 -1.16 0.61 16 22 N -0.25 -4.95 12.19 29.84 0.36 -4.59 16 23 N -0.26 -5.71 12.27 32.31 0.40 -5.32 16 24 C 0.22 4.31 7.81 -154.09 -1.20 3.11 16 25 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.14 3.02 5.64 -52.48 -0.30 2.72 16 27 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.18 2.27 8.06 -52.48 -0.42 1.85 16 31 H 0.21 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.23 1.79 8.06 -52.48 -0.42 1.37 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -34.67 292.81 -7.82 -42.49 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -2.25 Total: 0.89 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -6.32 Total: -12.33 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 1.20 Total: -48.03 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: 0.00 Total: -5.24 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.86 Total: 17.81 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.67 -7.82 -42.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588785.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.656 kcal (2) G-P(sol) polarization free energy of solvation -34.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds