Wall clock time and date at job start Tue Mar 31 2020 06:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31554 * 1 3 3 Si 1.86800 * 119.99806 * 2 1 4 4 H 1.48503 * 109.46962 * 239.99926 * 3 2 1 5 5 H 1.48499 * 109.47122 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47163 * 120.00040 * 3 2 1 7 7 C 1.38660 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99609 * 180.02562 * 7 2 1 9 9 O 1.34805 * 120.00033 * 0.02562 * 7 2 1 10 10 C 1.35675 * 116.99987 * 185.05787 * 9 7 2 11 11 C 1.39032 * 119.93892 * 354.44802 * 10 9 7 12 12 C 1.37787 * 120.06117 * 180.02562 * 11 10 9 13 13 C 1.39539 * 119.93766 * 359.97013 * 12 11 10 14 14 C 1.48121 * 120.05997 * 180.02562 * 13 12 11 15 15 N 1.32624 * 120.04556 * 325.00645 * 14 13 12 16 16 C 1.32155 * 122.29483 * 179.72620 * 15 14 13 17 17 C 1.36665 * 121.66825 * 0.02562 * 16 15 14 18 18 C 1.39986 * 118.97015 * 359.97438 * 17 16 15 19 19 N 1.34443 * 135.96773 * 179.97438 * 18 17 16 20 20 N 1.28770 * 109.17878 * 179.97438 * 19 18 17 21 21 N 1.28896 * 111.70874 * 0.07839 * 20 19 18 22 22 H 0.97003 * 125.89712 * 179.97438 * 21 20 19 23 23 C 1.36852 * 108.19544 * 359.94029 * 21 20 19 24 24 C 1.39540 * 119.88013 * 0.28317 * 13 12 11 25 25 C 1.37788 * 119.93855 * 359.46106 * 24 13 12 26 26 H 0.96998 * 119.99984 * 359.97438 * 1 2 3 27 27 H 1.08001 * 119.96680 * 359.97438 * 11 10 9 28 28 H 1.08001 * 120.03245 * 180.02562 * 12 11 10 29 29 H 1.07998 * 119.16853 * 179.97438 * 16 15 14 30 30 H 1.07988 * 120.51515 * 179.97438 * 17 16 15 31 31 H 1.08002 * 120.02656 * 179.72738 * 24 13 12 32 32 H 1.07999 * 119.96690 * 180.22624 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2845 2.7464 -0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2008 0.0010 9 8 1.3348 -2.3683 0.0005 10 6 2.0696 -3.5038 0.1077 11 6 3.4582 -3.4355 0.0946 12 6 4.2069 -4.5871 0.2027 13 6 3.5703 -5.8226 0.3260 14 6 4.3725 -7.0623 0.4429 15 7 5.5196 -7.1752 -0.2130 16 6 6.2730 -8.2583 -0.1366 17 6 5.9107 -9.3319 0.6276 18 6 4.7106 -9.2784 1.3462 19 7 4.0421 -10.1005 2.1738 20 7 2.9574 -9.5229 2.5586 21 7 2.8346 -8.3476 2.0439 22 1 2.0977 -7.7350 2.1942 23 6 3.9240 -8.1131 1.2494 24 6 2.1765 -5.8888 0.3335 25 6 1.4326 -4.7335 0.2304 26 1 -0.4850 0.8400 0.0004 27 1 3.9504 -2.4789 -0.0012 28 1 5.2856 -4.5335 0.1929 29 1 7.1981 -8.2964 -0.6926 30 1 6.5404 -10.2078 0.6762 31 1 1.6812 -6.8442 0.4244 32 1 0.3539 -4.7838 0.2398 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243588849.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:36 Heat of formation + Delta-G solvation = 121.797533 kcal Electronic energy + Delta-G solvation = -20281.445708 eV Core-core repulsion = 17016.995517 eV Total energy + Delta-G solvation = -3264.450191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.43634 -39.53695 -38.85343 -36.75472 -34.07113 -32.59743 -31.65950 -31.42859 -30.41666 -28.46207 -25.74864 -24.74362 -23.82565 -22.86238 -22.01558 -21.04557 -18.79370 -18.41577 -18.11508 -17.16664 -16.46257 -16.26821 -15.30117 -14.82597 -14.69735 -14.54466 -13.91842 -13.82307 -13.46414 -13.11292 -12.98902 -12.58508 -12.26668 -11.90096 -11.75123 -11.54388 -11.34476 -11.11874 -11.00887 -10.91321 -10.61760 -9.77500 -9.63500 -9.58898 -9.15800 -8.69797 -8.50520 -7.33271 -6.70172 -4.26089 0.26436 1.04889 1.81964 1.98627 2.36097 2.41441 3.01216 3.02041 3.05277 3.64889 3.77833 3.81838 4.15101 4.32224 4.42286 4.65872 4.78649 4.87077 4.94679 5.17903 5.33410 5.47679 5.56003 5.73973 5.81342 5.93624 6.12140 6.30997 6.36439 6.57777 6.64359 6.77822 6.90787 7.09594 7.16741 7.48538 7.74322 7.89209 8.06722 8.74298 9.39024 10.46101 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034261 B = 0.003636 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.063428 B = 7698.229810 C = 8289.910390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.098 0.902 9 O -0.161 6.161 10 C 0.165 3.835 11 C -0.238 4.238 12 C -0.014 4.014 13 C -0.176 4.176 14 C 0.267 3.733 15 N -0.469 5.469 16 C 0.095 3.905 17 C -0.135 4.135 18 C 0.048 3.952 19 N -0.260 5.260 20 N -0.007 5.007 21 N -0.392 5.392 22 H 0.456 0.544 23 C -0.029 4.029 24 C -0.060 4.060 25 C -0.189 4.189 26 H 0.275 0.725 27 H 0.134 0.866 28 H 0.120 0.880 29 H 0.166 0.834 30 H 0.145 0.855 31 H 0.105 0.895 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.038 -11.232 1.244 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.062 6.062 10 C 0.109 3.891 11 C -0.257 4.257 12 C -0.034 4.034 13 C -0.178 4.178 14 C 0.116 3.884 15 N -0.180 5.180 16 C -0.054 4.054 17 C -0.160 4.160 18 C -0.083 4.083 19 N -0.136 5.136 20 N 0.010 4.990 21 N -0.123 5.123 22 H 0.305 0.695 23 C -0.153 4.153 24 C -0.080 4.080 25 C -0.208 4.208 26 H 0.085 0.915 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.183 0.817 30 H 0.162 0.838 31 H 0.123 0.877 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.405 -11.495 1.580 13.764 hybrid contribution 0.163 1.177 -0.091 1.192 sum 7.568 -10.317 1.488 12.882 Atomic orbital electron populations 1.70019 1.06143 1.28464 1.43765 1.25394 0.95912 0.99175 0.95910 0.85711 0.78785 0.79148 0.79503 1.19175 1.20059 1.19206 1.21432 0.92125 0.80510 1.52830 0.88499 1.83935 1.34881 1.11762 1.75599 1.19508 0.90352 0.87894 0.91385 1.21152 0.93565 0.99188 1.11835 1.20791 0.99050 0.90552 0.92982 1.17828 0.91789 0.90513 1.17700 1.19150 0.90353 0.90341 0.88517 1.67949 1.04408 1.25559 1.20113 1.22278 0.98807 0.88037 0.96281 1.20923 0.94733 1.01542 0.98780 1.20079 0.97531 0.91060 0.99619 1.75327 1.00776 1.24377 1.13074 1.78053 1.14133 0.92345 1.14489 1.44973 1.19370 1.14359 1.33566 0.69467 1.20858 0.91963 1.00511 1.01968 1.20493 0.91997 0.96621 0.98866 1.20062 0.99730 0.89874 1.11166 0.91484 0.84857 0.86235 0.81674 0.83763 0.87698 0.85784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.32 13.67 55.48 0.76 -22.56 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 19.05 29.55 -169.99 -5.02 14.03 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.39 -10.15 9.48 30.89 0.29 -9.85 16 8 H 0.10 2.28 5.19 -52.49 -0.27 2.01 16 9 O -0.16 -4.22 9.75 0.35 0.00 -4.21 16 10 C 0.17 3.61 6.65 -38.99 -0.26 3.35 16 11 C -0.24 -4.71 9.15 -39.45 -0.36 -5.08 16 12 C -0.01 -0.25 9.58 -39.26 -0.38 -0.63 16 13 C -0.18 -2.89 5.74 -104.87 -0.60 -3.50 16 14 C 0.27 4.05 6.49 -82.87 -0.54 3.51 16 15 N -0.47 -6.81 9.96 -10.03 -0.10 -6.91 16 16 C 0.10 1.08 11.08 -17.98 -0.20 0.88 16 17 C -0.14 -1.54 10.12 -39.50 -0.40 -1.94 16 18 C 0.05 0.68 7.43 -85.05 -0.63 0.05 16 19 N -0.26 -3.86 12.42 32.06 0.40 -3.46 16 20 N -0.01 -0.10 13.30 60.35 0.80 0.71 16 21 N -0.39 -4.93 6.58 32.46 0.21 -4.71 16 22 H 0.46 4.56 7.43 -190.18 -1.41 3.15 16 23 C -0.03 -0.42 6.73 -84.00 -0.57 -0.98 16 24 C -0.06 -0.95 8.82 -39.26 -0.35 -1.30 16 25 C -0.19 -3.51 9.98 -39.45 -0.39 -3.91 16 26 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.13 2.62 5.62 -52.49 -0.30 2.33 16 28 H 0.12 1.89 7.97 -52.49 -0.42 1.48 16 29 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.11 1.35 6.51 -52.49 -0.34 1.00 16 32 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 288.49 15.07 4.35 4.35 Total: -1.00 -29.71 288.49 -6.22 -35.93 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -3.14 Total: 5.24 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -4.48 Total: -18.39 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 2.07 Total: -36.94 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: 0.00 Total: -4.21 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.71 -6.22 -35.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588849.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.729 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds