Wall clock time and date at job start Tue Mar 31 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86802 * 119.99639 * 2 1 4 4 H 1.48504 * 109.47193 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47324 * 300.00199 * 3 2 1 6 6 H 1.48499 * 109.46931 * 60.00456 * 3 2 1 7 7 C 1.38637 * 120.00620 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00528 * 179.97438 * 7 2 1 9 9 O 1.34818 * 119.99464 * 359.97438 * 7 2 1 10 10 C 1.35704 * 116.99772 * 185.05693 * 9 7 2 11 11 C 1.39003 * 119.94735 * 354.45376 * 10 9 7 12 12 C 1.37822 * 120.05409 * 180.02562 * 11 10 9 13 13 C 1.39454 * 119.94972 * 359.97438 * 12 11 10 14 14 C 1.48292 * 120.05669 * 179.97438 * 13 12 11 15 15 C 1.36463 * 119.55845 * 179.97438 * 14 13 12 16 16 N 1.35878 * 119.61523 * 179.97438 * 15 14 13 17 17 N 1.39919 * 134.27005 * 179.67980 * 16 15 14 18 18 C 1.31473 * 107.00572 * 179.97438 * 17 16 15 19 19 N 1.32441 * 109.64720 * 0.37403 * 18 17 16 20 20 C 1.32597 * 109.75063 * 359.75537 * 19 18 17 21 21 C 1.40802 * 133.64155 * 179.97438 * 20 19 18 22 22 N 1.31098 * 119.81369 * 180.02562 * 21 20 19 23 23 C 1.39457 * 119.88905 * 0.25249 * 13 12 11 24 24 C 1.37835 * 119.94336 * 359.48916 * 23 13 12 25 25 H 0.96998 * 120.00342 * 0.02562 * 1 2 3 26 26 H 1.08001 * 119.97374 * 0.02562 * 11 10 9 27 27 H 1.08000 * 120.02898 * 180.02562 * 12 11 10 28 28 H 1.07998 * 120.19082 * 0.02562 * 15 14 13 29 29 H 1.08001 * 125.17380 * 180.09220 * 18 17 16 30 30 H 1.07995 * 120.09319 * 0.05283 * 21 20 19 31 31 H 1.07993 * 120.02585 * 179.74697 * 23 13 12 32 32 H 1.07999 * 119.96638 * 180.22863 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3466 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8907 2.3964 1.2126 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2005 -0.0010 9 8 1.3348 -2.3681 -0.0005 10 6 2.0699 -3.5039 0.1055 11 6 3.4582 -3.4357 0.0915 12 6 4.2070 -4.5878 0.1985 13 6 3.5708 -5.8227 0.3215 14 6 4.3741 -7.0639 0.4362 15 6 3.7410 -8.2668 0.5566 16 7 4.4759 -9.4049 0.6613 17 7 4.1616 -10.7612 0.7999 18 6 5.3002 -11.4165 0.8513 19 7 6.3093 -10.5634 0.7625 20 6 5.8426 -9.3278 0.6455 21 6 6.4543 -8.0659 0.5199 22 7 5.7129 -6.9892 0.4203 23 6 2.1778 -5.8889 0.3305 24 6 1.4334 -4.7334 0.2286 25 1 -0.4850 0.8400 -0.0004 26 1 3.9506 -2.4791 -0.0033 27 1 5.2856 -4.5344 0.1880 28 1 2.6621 -8.3140 0.5678 29 1 5.3977 -12.4871 0.9551 30 1 7.5311 -7.9851 0.5052 31 1 1.6829 -6.8444 0.4215 32 1 0.3547 -4.7839 0.2392 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243590826.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:42 Heat of formation + Delta-G solvation = 137.068841 kcal Electronic energy + Delta-G solvation = -19948.223290 eV Core-core repulsion = 16684.435313 eV Total energy + Delta-G solvation = -3263.787977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.00948 -39.63308 -38.76756 -36.58216 -34.34895 -32.68475 -31.87285 -31.06760 -30.40475 -28.00107 -25.77920 -25.13141 -23.99630 -22.49400 -21.82649 -21.21688 -18.57391 -18.19667 -17.84133 -17.12757 -16.53614 -15.94601 -15.45785 -14.88504 -14.65970 -14.42590 -14.31178 -13.94009 -13.58114 -13.45626 -12.93291 -12.67050 -12.19785 -11.88592 -11.88036 -11.56212 -11.34498 -11.11287 -10.89146 -10.56677 -10.41639 -10.16149 -10.08489 -9.53100 -9.13994 -8.64976 -8.43824 -7.22446 -6.68785 -4.23700 0.25085 0.58970 1.79182 1.95840 2.06617 2.60472 3.00947 3.02965 3.08931 3.39312 3.60959 3.78930 3.83919 3.90248 4.42186 4.46096 4.82766 4.90963 4.98009 5.07320 5.13097 5.49762 5.56738 5.77571 5.96895 6.00284 6.07123 6.18194 6.26425 6.40691 6.68972 6.82215 6.95510 7.10949 7.20680 7.47153 7.54167 7.67185 7.76468 8.76017 9.41455 10.47679 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.049210 B = 0.003124 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.856717 B = 8961.014911 C = 9514.145770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.391 4.391 8 H 0.099 0.901 9 O -0.162 6.162 10 C 0.166 3.834 11 C -0.241 4.241 12 C -0.018 4.018 13 C -0.163 4.163 14 C 0.156 3.844 15 C 0.032 3.968 16 N -0.250 5.250 17 N -0.337 5.337 18 C 0.228 3.772 19 N -0.529 5.529 20 C 0.203 3.797 21 C 0.174 3.826 22 N -0.424 5.424 23 C -0.050 4.050 24 C -0.192 4.192 25 H 0.274 0.726 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.181 0.819 29 H 0.228 0.772 30 H 0.194 0.806 31 H 0.116 0.884 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.912 -13.075 0.998 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.116 0.884 9 O -0.062 6.062 10 C 0.110 3.890 11 C -0.260 4.260 12 C -0.037 4.037 13 C -0.165 4.165 14 C 0.034 3.966 15 C -0.100 4.100 16 N -0.027 5.027 17 N -0.171 5.171 18 C -0.073 4.073 19 N -0.260 5.260 20 C -0.053 4.053 21 C -0.009 4.009 22 N -0.136 5.136 23 C -0.070 4.070 24 C -0.211 4.211 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.142 0.858 28 H 0.198 0.802 29 H 0.244 0.756 30 H 0.211 0.789 31 H 0.133 0.867 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.316 -12.526 0.948 15.065 hybrid contribution 0.003 -0.008 0.071 0.071 sum 8.319 -12.534 1.019 15.078 Atomic orbital electron populations 1.70040 1.06143 1.28228 1.43962 1.25401 0.95920 0.99207 0.95988 0.85575 0.79273 0.79755 0.78483 1.18778 1.19910 1.19895 1.21534 0.92189 0.80501 1.52428 0.88373 1.83947 1.34952 1.11805 1.75527 1.19541 0.90387 0.87896 0.91214 1.21146 0.93548 0.99157 1.12148 1.20827 0.99390 0.90496 0.92980 1.17512 0.91572 0.89547 1.17911 1.19278 0.88601 0.91712 0.96973 1.22382 0.99855 0.81680 1.06043 1.47665 1.07395 1.06663 1.40933 1.78603 1.22797 0.83201 1.32473 1.26251 0.84570 1.01351 0.95087 1.70670 1.31346 0.96965 1.27059 1.23034 0.82912 0.96831 1.02505 1.22862 1.01373 0.81964 0.94713 1.68209 1.06049 1.29923 1.09416 1.20607 0.91955 0.97171 0.97222 1.20085 0.99809 0.89881 1.11354 0.91602 0.84901 0.85786 0.80218 0.75620 0.78898 0.86651 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.43 13.67 55.48 0.76 -22.67 16 2 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 3 Si 0.95 19.15 29.55 -169.99 -5.02 14.12 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 7 C -0.39 -10.13 9.48 30.88 0.29 -9.83 16 8 H 0.10 2.33 5.19 -52.49 -0.27 2.06 16 9 O -0.16 -4.26 9.75 0.23 0.00 -4.25 16 10 C 0.17 3.66 6.65 -39.02 -0.26 3.40 16 11 C -0.24 -4.78 9.15 -39.45 -0.36 -5.15 16 12 C -0.02 -0.31 9.56 -39.28 -0.38 -0.69 16 13 C -0.16 -2.64 5.88 -104.85 -0.62 -3.25 16 14 C 0.16 2.26 6.67 -83.38 -0.56 1.70 16 15 C 0.03 0.43 10.63 -16.40 -0.17 0.25 16 16 N -0.25 -3.52 3.95 -12.01 -0.05 -3.57 16 17 N -0.34 -4.60 12.80 29.28 0.37 -4.22 16 18 C 0.23 2.59 12.98 -91.87 -1.19 1.40 16 19 N -0.53 -6.88 11.23 -13.91 -0.16 -7.04 16 20 C 0.20 2.70 7.92 -156.23 -1.24 1.46 16 21 C 0.17 2.02 11.32 -16.90 -0.19 1.83 16 22 N -0.42 -5.79 9.47 -9.67 -0.09 -5.88 16 23 C -0.05 -0.80 9.39 -39.28 -0.37 -1.17 16 24 C -0.19 -3.63 9.98 -39.45 -0.39 -4.02 16 25 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.13 2.63 5.62 -52.49 -0.30 2.33 16 27 H 0.12 1.93 7.52 -52.49 -0.39 1.54 16 28 H 0.18 2.05 6.08 -52.49 -0.32 1.73 16 29 H 0.23 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 1.43 6.14 -52.49 -0.32 1.11 16 32 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 289.90 15.07 4.37 4.37 Total: -1.00 -30.46 289.90 -7.35 -37.81 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -2.01 Total: 4.43 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -5.53 Total: -13.10 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.84 Total: -43.38 kcal Atomic # 8 Polarization: -4.26 SS G_CDS: 0.00 Total: -4.25 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.46 -7.35 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243590826.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.883 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds