Wall clock time and date at job start Tue Mar 31 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86801 * 120.00236 * 2 1 4 4 H 1.48502 * 109.47255 * 270.00755 * 3 2 1 5 5 H 1.48509 * 109.46784 * 30.00454 * 3 2 1 6 6 H 1.48493 * 109.46969 * 150.00129 * 3 2 1 7 7 C 1.38662 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99983 * 179.97438 * 7 2 1 9 9 O 1.34817 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.35669 * 117.00112 * 185.05901 * 9 7 2 11 11 C 1.39017 * 119.94727 * 354.44771 * 10 9 7 12 12 C 1.37810 * 120.05832 * 179.97438 * 11 10 9 13 13 C 1.39468 * 119.94442 * 359.97438 * 12 11 10 14 14 C 1.48267 * 120.05635 * 179.97438 * 13 12 11 15 15 C 1.41145 * 119.61741 * 180.20476 * 14 13 12 16 16 C 1.35891 * 120.09641 * 180.24594 * 15 14 13 17 17 C 1.40801 * 119.17438 * 359.52617 * 16 15 14 18 18 N 1.32296 * 133.78224 * 180.23084 * 17 16 15 19 19 N 1.28737 * 109.27592 * 180.02562 * 18 17 16 20 20 C 1.30985 * 110.22576 * 0.02562 * 19 18 17 21 21 N 1.35093 * 107.66139 * 359.97438 * 20 19 18 22 22 N 1.31529 * 119.61330 * 0.02562 * 14 13 12 23 23 C 1.39468 * 119.89520 * 0.27762 * 13 12 11 24 24 C 1.37819 * 119.93712 * 359.46172 * 23 13 12 25 25 H 0.97001 * 119.99854 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.97387 * 359.97438 * 11 10 9 27 27 H 1.08001 * 120.03008 * 180.02562 * 12 11 10 28 28 H 1.07995 * 119.95408 * 0.04612 * 15 14 13 29 29 H 1.08000 * 120.41623 * 179.79269 * 16 15 14 30 30 H 1.08001 * 126.16847 * 180.02562 * 20 19 18 31 31 H 1.08000 * 120.03413 * 179.72786 * 23 13 12 32 32 H 1.08005 * 119.97036 * 180.25646 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4400 0.7000 7 6 2.0088 -1.2009 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0696 -3.5039 0.1055 11 6 3.4580 -3.4359 0.0914 12 6 4.2067 -4.5878 0.1995 13 6 3.5703 -5.8226 0.3237 14 6 4.3734 -7.0636 0.4396 15 6 3.7197 -8.3087 0.5605 16 6 4.4461 -9.4517 0.6724 17 6 5.8520 -9.3758 0.6557 18 7 6.8183 -10.2757 0.7374 19 7 7.9587 -9.6818 0.6724 20 6 7.7895 -8.3889 0.5479 21 7 6.4601 -8.1491 0.5326 22 7 5.6866 -6.9916 0.4250 23 6 2.1772 -5.8889 0.3323 24 6 1.4330 -4.7335 0.2293 25 1 -0.4850 0.8401 0.0004 26 1 3.9504 -2.4794 -0.0043 27 1 5.2853 -4.5344 0.1890 28 1 2.6407 -8.3528 0.5673 29 1 3.9513 -10.4068 0.7685 30 1 8.5718 -7.6483 0.4706 31 1 1.6821 -6.8444 0.4239 32 1 0.3542 -4.7839 0.2401 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592205.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:27 Heat of formation + Delta-G solvation = 142.535106 kcal Electronic energy + Delta-G solvation = -19954.831630 eV Core-core repulsion = 16691.280688 eV Total energy + Delta-G solvation = -3263.550942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.29274 -39.63947 -38.62415 -36.61356 -33.97188 -32.86625 -32.21981 -30.73667 -29.93984 -28.91575 -25.83287 -24.84227 -23.88975 -22.31089 -22.01615 -21.25687 -18.88278 -18.23312 -17.67655 -17.30418 -16.56881 -16.33164 -15.13175 -14.76030 -14.61529 -14.33099 -14.05020 -13.90938 -13.41065 -13.33720 -12.95321 -12.83082 -12.27199 -11.96610 -11.75023 -11.52206 -11.41554 -11.15087 -11.04583 -10.87843 -10.65050 -10.33126 -10.08528 -9.65173 -9.10674 -8.74479 -8.55643 -7.50445 -6.79710 -4.34073 0.17296 0.86741 1.75404 1.94067 1.99317 2.65336 2.94948 2.96812 3.02134 3.16271 3.70831 3.84453 3.91861 4.27929 4.29851 4.60660 4.73178 4.80398 4.92317 5.11010 5.32851 5.37329 5.43762 5.53224 5.61400 5.81980 5.87161 6.02864 6.18960 6.30005 6.57008 6.69804 6.86096 6.99290 7.09651 7.41245 7.50164 7.65274 8.33732 8.64522 9.28124 10.36028 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038396 B = 0.003233 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.067619 B = 8658.607711 C = 9373.285563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.392 4.392 8 H 0.100 0.900 9 O -0.155 6.155 10 C 0.171 3.829 11 C -0.243 4.243 12 C -0.013 4.013 13 C -0.179 4.179 14 C 0.243 3.757 15 C -0.145 4.145 16 C -0.019 4.019 17 C 0.131 3.869 18 N -0.265 5.265 19 N -0.272 5.272 20 C 0.174 3.826 21 N -0.292 5.292 22 N -0.287 5.287 23 C -0.033 4.033 24 C -0.194 4.194 25 H 0.276 0.724 26 H 0.134 0.866 27 H 0.121 0.879 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.227 0.773 31 H 0.122 0.878 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.223 -9.828 0.735 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.467 4.467 8 H 0.117 0.883 9 O -0.054 6.054 10 C 0.113 3.887 11 C -0.262 4.262 12 C -0.033 4.033 13 C -0.184 4.184 14 C 0.075 3.925 15 C -0.171 4.171 16 C -0.047 4.047 17 C -0.124 4.124 18 N -0.114 5.114 19 N -0.115 5.115 20 C -0.112 4.112 21 N -0.066 5.066 22 N -0.102 5.102 23 C -0.053 4.053 24 C -0.214 4.214 25 H 0.087 0.913 26 H 0.152 0.848 27 H 0.139 0.861 28 H 0.179 0.821 29 H 0.183 0.817 30 H 0.243 0.757 31 H 0.140 0.860 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.363 -10.274 0.772 12.109 hybrid contribution -0.595 1.461 -0.075 1.579 sum 5.768 -8.813 0.697 10.556 Atomic orbital electron populations 1.70026 1.06198 1.28603 1.42950 1.25440 0.95947 0.99312 0.95737 0.85618 0.79061 0.79245 0.79094 1.19488 1.19917 1.18807 1.21541 0.92259 0.80419 1.52497 0.88272 1.83931 1.35120 1.11909 1.74486 1.19570 0.90345 0.87905 0.90896 1.21124 0.93570 0.99140 1.12403 1.20876 0.99234 0.90815 0.92415 1.17503 0.91741 0.89045 1.20075 1.21107 0.88776 0.94680 0.87892 1.21800 1.02852 0.90949 1.01539 1.20429 0.87704 1.00829 0.95690 1.22631 0.96845 0.83911 1.08965 1.74887 0.93627 1.23884 1.18996 1.74483 1.17457 1.02514 1.17046 1.26144 0.82542 0.96400 1.06088 1.47768 1.07453 1.05633 1.45745 1.76067 1.05976 1.02518 1.25655 1.20635 0.91527 0.97426 0.95719 1.20118 0.99947 0.89783 1.11518 0.91349 0.84824 0.86120 0.82085 0.81739 0.75671 0.85996 0.85528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.53 13.67 55.48 0.76 -21.77 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.95 18.53 29.55 -169.99 -5.02 13.51 16 4 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.39 -9.80 9.48 30.89 0.29 -9.50 16 8 H 0.10 2.27 5.19 -52.49 -0.27 1.99 16 9 O -0.16 -3.92 9.75 0.34 0.00 -3.92 16 10 C 0.17 3.58 6.65 -39.01 -0.26 3.32 16 11 C -0.24 -4.63 9.15 -39.45 -0.36 -4.99 16 12 C -0.01 -0.23 9.56 -39.28 -0.38 -0.60 16 13 C -0.18 -2.73 5.88 -104.86 -0.62 -3.35 16 14 C 0.24 3.41 6.83 -82.77 -0.57 2.84 16 15 C -0.15 -1.57 9.38 -39.32 -0.37 -1.94 16 16 C -0.02 -0.21 10.10 -39.45 -0.40 -0.61 16 17 C 0.13 1.89 7.99 -155.95 -1.25 0.65 16 18 N -0.27 -4.21 12.32 31.16 0.38 -3.82 16 19 N -0.27 -4.16 12.20 29.69 0.36 -3.79 16 20 C 0.17 2.30 13.16 -89.92 -1.18 1.11 16 21 N -0.29 -4.32 4.03 -13.36 -0.05 -4.37 16 22 N -0.29 -4.35 10.99 33.44 0.37 -3.99 16 23 C -0.03 -0.47 9.41 -39.28 -0.37 -0.84 16 24 C -0.19 -3.40 9.98 -39.45 -0.39 -3.79 16 25 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.13 2.54 5.62 -52.48 -0.30 2.25 16 27 H 0.12 1.87 7.53 -52.49 -0.40 1.47 16 28 H 0.16 1.20 6.17 -52.49 -0.32 0.88 16 29 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.23 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.12 1.25 6.15 -52.49 -0.32 0.93 16 32 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 290.07 15.07 4.37 4.37 Total: -1.00 -30.05 290.07 -6.78 -36.83 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.01 Total: 3.69 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -5.94 Total: -16.74 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 1.82 Total: -37.75 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: 0.00 Total: -3.92 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.02 Total: 13.51 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.05 -6.78 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592205.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.368 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds