Wall clock time and date at job start Tue Mar 31 2020 06:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31545 * 1 3 3 Si 1.86800 * 120.00391 * 2 1 4 4 H 1.48493 * 109.47278 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46730 * 300.00674 * 3 2 1 6 6 H 1.48501 * 109.46698 * 60.00009 * 3 2 1 7 7 C 1.38662 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99797 * 179.97438 * 7 2 1 9 9 O 1.34809 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.35656 * 116.99939 * 185.06032 * 9 7 2 11 11 C 1.39063 * 119.93331 * 354.44301 * 10 9 7 12 12 C 1.37754 * 120.06713 * 180.02562 * 11 10 9 13 13 C 1.39621 * 119.93124 * 359.97438 * 12 11 10 14 14 C 1.47967 * 120.06608 * 179.97438 * 13 12 11 15 15 N 1.32191 * 120.28524 * 324.97942 * 14 13 12 16 16 C 1.33143 * 121.16555 * 180.02562 * 15 14 13 17 17 C 1.35361 * 121.29908 * 359.79234 * 16 15 14 18 18 N 1.36200 * 119.93905 * 0.41460 * 17 16 15 19 19 N 1.39909 * 134.33562 * 179.90745 * 18 17 16 20 20 C 1.31434 * 106.97648 * 179.71200 * 19 18 17 21 21 N 1.32527 * 109.59453 * 0.02562 * 20 19 18 22 22 C 1.32334 * 109.74738 * 0.02562 * 21 20 19 23 23 C 1.39628 * 119.86720 * 0.25418 * 13 12 11 24 24 C 1.37753 * 119.92845 * 359.46784 * 23 13 12 25 25 H 0.97005 * 120.00124 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.96642 * 359.97438 * 11 10 9 27 27 H 1.08000 * 120.03394 * 180.02562 * 12 11 10 28 28 H 1.08001 * 119.35216 * 179.97438 * 16 15 14 29 29 H 1.08003 * 120.03129 * 180.02562 * 17 16 15 30 30 H 1.08005 * 125.20647 * 179.97438 * 20 19 18 31 31 H 1.07994 * 120.02817 * 179.74634 * 23 13 12 32 32 H 1.08003 * 119.96411 * 180.26929 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3964 -1.2125 6 1 1.8908 2.3963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0694 -3.5037 0.1055 11 6 3.4582 -3.4353 0.0913 12 6 4.2071 -4.5866 0.1983 13 6 3.5702 -5.8230 0.3217 14 6 4.3716 -7.0615 0.4362 15 7 5.5144 -7.1790 -0.2177 16 6 6.2492 -8.2856 -0.1277 17 6 5.8569 -9.3298 0.6391 18 7 4.6854 -9.2630 1.3306 19 7 4.0046 -10.1347 2.1874 20 6 2.9069 -9.5199 2.5675 21 7 2.8523 -8.3204 2.0064 22 6 3.9195 -8.1332 1.2467 23 6 2.1755 -5.8889 0.3308 24 6 1.4322 -4.7336 0.2292 25 1 -0.4850 0.8401 0.0004 26 1 3.9503 -2.4787 -0.0045 27 1 5.2857 -4.5328 0.1877 28 1 7.1781 -8.3503 -0.6749 29 1 6.4691 -10.2176 0.6976 30 1 2.1627 -9.9297 3.2343 31 1 1.6802 -6.8442 0.4220 32 1 0.3534 -4.7835 0.2406 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243593588.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:54 Heat of formation + Delta-G solvation = 138.764912 kcal Electronic energy + Delta-G solvation = -20263.628474 eV Core-core repulsion = 16999.914044 eV Total energy + Delta-G solvation = -3263.714430 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.94653 -39.29743 -38.73105 -36.68276 -34.16942 -32.48382 -31.72709 -30.78400 -30.18113 -28.50735 -25.67687 -24.57568 -24.16045 -22.36632 -21.87372 -20.88436 -18.60552 -17.99429 -17.80433 -17.10705 -16.45004 -15.91186 -15.43697 -14.73850 -14.57941 -14.38954 -13.98985 -13.76596 -13.54879 -13.27299 -12.80731 -12.61570 -12.27961 -11.92926 -11.78342 -11.31740 -11.22187 -10.92216 -10.73481 -10.51106 -10.23010 -10.05244 -10.02138 -9.46181 -9.04422 -8.53767 -8.27772 -7.18636 -6.61546 -4.16000 0.23097 0.77341 1.83055 2.16628 2.22838 2.59301 3.05566 3.07443 3.13393 3.44991 3.66168 3.85518 3.92886 4.06770 4.50342 4.54396 4.85558 4.96384 5.06536 5.14834 5.22373 5.63637 5.75889 5.87742 6.02177 6.13406 6.14868 6.30018 6.33879 6.59190 6.81816 6.92332 7.14628 7.20968 7.30647 7.60583 7.68373 7.79452 7.84372 8.83365 9.50648 10.55118 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.034690 B = 0.003624 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.956147 B = 7725.161927 C = 8308.916852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.390 4.390 8 H 0.099 0.901 9 O -0.162 6.162 10 C 0.172 3.828 11 C -0.245 4.245 12 C -0.013 4.013 13 C -0.171 4.171 14 C 0.283 3.717 15 N -0.457 5.457 16 C 0.056 3.944 17 C 0.019 3.981 18 N -0.264 5.264 19 N -0.338 5.338 20 C 0.227 3.773 21 N -0.509 5.509 22 C 0.230 3.770 23 C -0.018 4.018 24 C -0.198 4.198 25 H 0.273 0.727 26 H 0.133 0.867 27 H 0.117 0.883 28 H 0.186 0.814 29 H 0.174 0.826 30 H 0.229 0.771 31 H 0.123 0.877 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.749 -14.017 1.194 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.116 0.884 9 O -0.062 6.062 10 C 0.115 3.885 11 C -0.264 4.264 12 C -0.033 4.033 13 C -0.175 4.175 14 C 0.126 3.874 15 N -0.172 5.172 16 C -0.088 4.088 17 C -0.110 4.110 18 N -0.042 5.042 19 N -0.171 5.171 20 C -0.073 4.073 21 N -0.239 5.239 22 C -0.029 4.029 23 C -0.038 4.038 24 C -0.217 4.217 25 H 0.083 0.917 26 H 0.151 0.849 27 H 0.135 0.865 28 H 0.203 0.797 29 H 0.191 0.809 30 H 0.245 0.755 31 H 0.141 0.859 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.578 -13.776 0.991 16.807 hybrid contribution 0.434 -0.051 0.477 0.647 sum 10.012 -13.827 1.468 17.134 Atomic orbital electron populations 1.70044 1.06117 1.28104 1.44175 1.25390 0.95901 0.99143 0.96087 0.85586 0.79257 0.79869 0.78420 1.18832 1.19958 1.19950 1.21535 0.92171 0.80568 1.52344 0.88417 1.83936 1.34961 1.11791 1.75560 1.19588 0.90332 0.87851 0.90682 1.21071 0.93564 0.98975 1.12831 1.20756 0.98787 0.90587 0.93124 1.17545 0.92046 0.89110 1.18781 1.19796 0.89794 0.90507 0.87302 1.68422 1.05066 1.24071 1.19622 1.22402 1.00703 0.87856 0.97873 1.22430 0.87617 1.03512 0.97482 1.47832 1.15461 1.12236 1.28654 1.78513 1.10565 1.14659 1.13402 1.26350 0.94715 0.88786 0.97415 1.70720 1.20986 1.18128 1.14067 1.22886 0.90293 0.90419 0.99261 1.20725 0.91710 0.97571 0.93750 1.20104 0.99842 0.89769 1.12002 0.91682 0.84946 0.86500 0.79716 0.80856 0.75500 0.85930 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.89 13.67 55.48 0.76 -23.13 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 4 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.39 -10.38 9.48 30.89 0.29 -10.08 16 8 H 0.10 2.38 5.19 -52.49 -0.27 2.11 16 9 O -0.16 -4.41 9.75 0.40 0.00 -4.41 16 10 C 0.17 4.00 6.65 -38.97 -0.26 3.74 16 11 C -0.25 -5.12 9.15 -39.45 -0.36 -5.48 16 12 C -0.01 -0.24 9.59 -39.24 -0.38 -0.62 16 13 C -0.17 -3.12 5.75 -104.88 -0.60 -3.73 16 14 C 0.28 4.62 6.53 -82.38 -0.54 4.08 16 15 N -0.46 -6.57 10.07 -9.77 -0.10 -6.67 16 16 C 0.06 0.58 11.07 -18.01 -0.20 0.38 16 17 C 0.02 0.20 11.25 -16.64 -0.19 0.01 16 18 N -0.26 -3.71 3.97 -12.03 -0.05 -3.76 16 19 N -0.34 -4.68 12.80 29.29 0.37 -4.30 16 20 C 0.23 2.92 12.99 -91.83 -1.19 1.72 16 21 N -0.51 -8.04 9.94 -13.74 -0.14 -8.18 16 22 C 0.23 3.67 7.31 -156.22 -1.14 2.53 16 23 C -0.02 -0.33 9.18 -39.24 -0.36 -0.69 16 24 C -0.20 -4.09 9.98 -39.46 -0.39 -4.48 16 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.13 2.72 5.62 -52.48 -0.30 2.42 16 27 H 0.12 1.91 7.97 -52.49 -0.42 1.49 16 28 H 0.19 1.10 8.06 -52.49 -0.42 0.68 16 29 H 0.17 1.16 8.06 -52.48 -0.42 0.73 16 30 H 0.23 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.12 2.11 6.96 -52.49 -0.37 1.75 16 32 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -31.73 291.76 -7.36 -39.09 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -2.18 Total: 4.08 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -5.41 Total: -11.64 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.85 Total: -46.05 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.00 Total: -4.41 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.73 -7.36 -39.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243593588.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.859 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds