Wall clock time and date at job start Tue Mar 31 2020 06:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30805 * 1 3 3 Si 1.86800 * 120.00535 * 2 1 4 4 H 1.48502 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46732 * 299.99794 * 3 2 1 6 6 H 1.48497 * 109.47304 * 59.99483 * 3 2 1 7 7 C 1.40028 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00580 * 195.50969 * 7 2 1 9 9 C 1.40814 * 120.00016 * 15.50608 * 7 2 1 10 10 C 1.40773 * 120.33634 * 25.32245 * 9 7 2 11 11 C 1.36383 * 119.99162 * 179.97438 * 10 9 7 12 12 C 1.38994 * 120.71412 * 0.02562 * 11 10 9 13 13 C 1.37970 * 120.69308 * 359.97438 * 12 11 10 14 14 C 1.39311 * 119.97504 * 359.97438 * 13 12 11 15 15 C 1.47642 * 120.34631 * 180.02562 * 14 13 12 16 16 C 1.39478 * 120.15799 * 65.00461 * 15 14 13 17 17 C 1.38238 * 120.53434 * 179.97438 * 16 15 14 18 18 C 1.38278 * 120.42227 * 0.04024 * 17 16 15 19 19 F 1.35102 * 120.05889 * 179.97438 * 18 17 16 20 20 C 1.39747 * 119.88806 * 359.97438 * 18 17 16 21 21 C 1.46808 * 134.25948 * 180.02562 * 20 18 17 22 22 C 1.34016 * 106.14732 * 179.23855 * 21 20 18 23 23 O 1.34456 * 110.07790 * 0.65278 * 22 21 20 24 24 C 1.34671 * 110.89933 * 359.39919 * 23 22 21 25 25 H 0.97005 * 119.99155 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.00280 * 359.96466 * 10 9 7 27 27 H 1.08001 * 119.64368 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.65351 * 180.02562 * 12 11 10 29 29 H 1.08002 * 120.01246 * 179.72570 * 13 12 11 30 30 H 1.08000 * 119.73178 * 359.97438 * 16 15 14 31 31 H 1.07994 * 119.79191 * 180.02562 * 17 16 15 32 32 H 1.07994 * 126.92409 * 359.94794 * 21 20 18 33 33 H 1.07995 * 124.96044 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2422 1.6176 0.0000 4 1 3.7022 1.3462 0.0006 5 1 1.8835 2.3963 -1.2126 6 1 1.8835 2.3965 1.2124 7 6 2.0082 -1.2127 0.0005 8 1 3.0587 -1.2298 0.2506 9 6 1.3425 -2.4101 -0.3249 10 6 0.1929 -2.3864 -1.1371 11 6 -0.4460 -3.5504 -1.4484 12 6 0.0247 -4.7681 -0.9714 13 6 1.1487 -4.8249 -0.1733 14 6 1.8244 -3.6535 0.1617 15 6 3.0283 -3.7048 1.0147 16 6 4.1825 -4.3425 0.5602 17 6 5.3143 -4.3947 1.3522 18 6 5.3176 -3.8154 2.6078 19 9 6.4276 -3.8711 3.3759 20 6 4.1707 -3.1721 3.0809 21 6 3.8289 -2.4701 4.3241 22 6 2.5647 -2.0496 4.1792 23 8 2.0858 -2.4310 2.9821 24 6 3.0187 -3.1067 2.2845 25 1 -0.4849 0.8402 -0.0004 26 1 -0.1831 -1.4466 -1.5135 27 1 -1.3272 -3.5258 -2.0723 28 1 -0.4944 -5.6796 -1.2289 29 1 1.5023 -5.7766 0.1949 30 1 4.1920 -4.7993 -0.4184 31 1 6.2015 -4.8912 0.9882 32 1 4.4709 -2.3133 5.1782 33 1 2.0082 -1.4949 4.9201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244930980.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:56 Heat of formation + Delta-G solvation = -0.932074 kcal Electronic energy + Delta-G solvation = -21286.105783 eV Core-core repulsion = 17964.120925 eV Total energy + Delta-G solvation = -3321.984858 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.48032 -41.86733 -38.02247 -36.62523 -33.76155 -32.49951 -30.86086 -29.61657 -29.02545 -27.67681 -25.29310 -22.98537 -22.19789 -21.23112 -20.86586 -19.60550 -17.53114 -17.34503 -16.94106 -15.80684 -15.72712 -15.49554 -14.94226 -14.86321 -14.44387 -14.15307 -13.46558 -13.06015 -12.86134 -12.72992 -12.60642 -12.17197 -11.68931 -11.46001 -11.32189 -11.25631 -11.14946 -10.99173 -10.70703 -10.47487 -9.85725 -9.51714 -9.47370 -9.27697 -8.19068 -7.75217 -7.47358 -7.21763 -6.83003 -4.44205 1.24520 1.77466 2.62464 2.77133 2.94647 3.02040 3.08334 3.18027 3.37144 3.86371 4.06911 4.55934 4.60050 4.79054 5.19283 5.27317 5.56497 5.60141 5.69512 5.81464 6.00531 6.16579 6.29530 6.40333 6.44532 6.53785 6.68057 6.81794 6.87895 6.98314 7.12443 7.16504 7.29687 7.50243 7.68603 7.82637 7.96063 8.04288 8.18624 8.53350 8.77884 8.87690 10.06801 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.013806 B = 0.008153 C = 0.006164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.641222 B = 3433.668392 C = 4541.605302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.079 3.921 3 Si 0.902 3.098 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.441 4.441 8 H 0.077 0.923 9 C 0.135 3.865 10 C -0.158 4.158 11 C -0.100 4.100 12 C -0.245 4.245 13 C -0.066 4.066 14 C -0.200 4.200 15 C 0.036 3.964 16 C -0.089 4.089 17 C -0.163 4.163 18 C 0.108 3.892 19 F -0.146 7.146 20 C -0.173 4.173 21 C -0.220 4.220 22 C 0.010 3.990 23 O -0.161 6.161 24 C 0.105 3.895 25 H 0.281 0.719 26 H 0.121 0.879 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -2.649 4.181 6.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.140 4.140 3 Si 0.726 3.274 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.470 4.470 8 H 0.095 0.905 9 C 0.132 3.868 10 C -0.177 4.177 11 C -0.118 4.118 12 C -0.265 4.265 13 C -0.084 4.084 14 C -0.201 4.201 15 C 0.035 3.965 16 C -0.107 4.107 17 C -0.182 4.182 18 C 0.089 3.911 19 F -0.125 7.125 20 C -0.175 4.175 21 C -0.239 4.239 22 C -0.057 4.057 23 O -0.059 6.059 24 C 0.056 3.944 25 H 0.092 0.908 26 H 0.139 0.861 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.157 0.843 31 H 0.151 0.849 32 H 0.170 0.830 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 4.492 -2.423 4.119 6.558 hybrid contribution 0.642 0.888 0.425 1.175 sum 5.134 -1.535 4.544 7.026 Atomic orbital electron populations 1.69815 1.07552 1.29264 1.34155 1.25916 0.94700 1.01316 0.92088 0.86336 0.81273 0.81020 0.78746 1.18232 1.19487 1.19806 1.19499 0.97293 0.90826 1.39335 0.90517 1.17494 0.90616 0.90796 0.87857 1.21090 0.98649 0.97101 1.00909 1.20491 0.98414 0.93383 0.99527 1.20241 1.01203 0.96313 1.08700 1.20520 0.95323 0.95353 0.97221 1.18373 0.99567 0.94296 1.07877 1.17815 0.94885 0.95009 0.88757 1.20884 0.90258 0.99986 0.99594 1.20790 1.00239 1.04069 0.93132 1.16957 0.81664 1.02188 0.90267 1.91416 1.50948 1.94916 1.75183 1.19797 0.94866 1.05994 0.96807 1.22272 0.97107 1.05944 0.98549 1.23961 0.94832 0.99936 0.86935 1.84204 1.38295 1.58391 1.25013 1.19544 0.85882 0.95785 0.93162 0.90759 0.86117 0.89472 0.89379 0.89173 0.84342 0.84936 0.83027 0.78073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.51 10.87 55.55 0.60 -18.91 16 2 C 0.08 1.92 5.18 -17.32 -0.09 1.83 16 3 Si 0.90 18.52 29.59 -169.99 -5.03 13.49 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.44 -11.31 7.98 -37.94 -0.30 -11.61 16 8 H 0.08 1.99 7.08 -52.49 -0.37 1.62 16 9 C 0.14 3.47 5.59 -106.54 -0.60 2.87 16 10 C -0.16 -3.99 8.63 -39.29 -0.34 -4.33 16 11 C -0.10 -2.28 9.96 -39.97 -0.40 -2.68 16 12 C -0.25 -5.36 10.03 -39.40 -0.40 -5.75 16 13 C -0.07 -1.45 9.73 -39.28 -0.38 -1.83 16 14 C -0.20 -4.70 5.37 -104.24 -0.56 -5.26 16 15 C 0.04 0.77 4.40 -104.80 -0.46 0.31 16 16 C -0.09 -1.61 9.71 -39.12 -0.38 -1.99 16 17 C -0.16 -2.70 10.00 -39.57 -0.40 -3.10 16 18 C 0.11 1.96 7.34 -39.00 -0.29 1.67 16 19 F -0.15 -2.50 17.27 2.25 0.04 -2.46 16 20 C -0.17 -3.34 6.38 -105.13 -0.67 -4.01 16 21 C -0.22 -3.62 11.15 -37.60 -0.42 -4.04 16 22 C 0.01 0.16 11.96 29.25 0.35 0.51 16 23 O -0.16 -3.44 10.58 4.28 0.05 -3.40 16 24 C 0.10 2.25 6.23 -38.04 -0.24 2.01 16 25 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 26 H 0.12 3.12 6.12 -52.49 -0.32 2.80 16 27 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 28 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 29 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 31 H 0.13 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 33 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 297.15 15.07 4.48 4.48 Total: -1.00 -27.98 297.15 -8.21 -36.19 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -2.79 Total: 6.01 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -5.56 Total: -35.39 kcal Atomic # 7 Polarization: -19.51 SS G_CDS: 0.60 Total: -18.91 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: 0.05 Total: -3.40 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.98 -8.21 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244930980.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.255 kcal (2) G-P(sol) polarization free energy of solvation -27.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds