Wall clock time and date at job start Tue Mar 31 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47364 * 300.00173 * 3 2 1 6 6 H 1.48500 * 109.46997 * 60.00498 * 3 2 1 7 7 C 1.37875 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99955 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46953 * 60.00279 * 9 7 2 11 11 O 1.45194 * 109.47297 * 180.02562 * 9 7 2 12 12 C 1.34231 * 117.00361 * 210.00209 * 11 9 7 13 13 O 1.20819 * 119.99715 * 0.02562 * 12 11 9 14 14 C 1.50698 * 120.00100 * 179.97438 * 12 11 9 15 15 C 1.53001 * 109.47119 * 180.02562 * 14 12 11 16 16 O 1.43746 * 109.63040 * 294.36576 * 15 14 12 17 17 C 1.44787 * 104.81542 * 215.80530 * 16 15 14 18 18 C 1.54907 * 101.72082 * 36.10479 * 17 16 15 19 19 O 1.43366 * 109.63395 * 175.00045 * 15 14 12 20 20 C 1.50698 * 109.47294 * 300.00837 * 9 7 2 21 21 C 1.34509 * 125.79256 * 99.99718 * 20 9 7 22 22 C 1.41383 * 106.84119 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.83982 * 359.97438 * 22 21 20 24 24 O 1.34298 * 108.42289 * 359.74138 * 23 22 21 25 25 H 0.97003 * 119.99476 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47353 * 299.99806 * 14 12 11 27 27 H 1.09003 * 109.46998 * 60.00278 * 14 12 11 28 28 H 1.09004 * 109.62862 * 54.60875 * 15 14 12 29 29 H 1.08999 * 110.97678 * 277.99381 * 17 16 15 30 30 H 1.08996 * 111.00929 * 154.22910 * 17 16 15 31 31 H 1.08997 * 110.69977 * 206.04283 * 18 17 16 32 32 H 1.09007 * 110.84492 * 82.90284 * 18 17 16 33 33 H 1.08003 * 126.57919 * 0.03451 * 21 20 9 34 34 H 1.07996 * 126.58150 * 179.97438 * 22 21 20 35 35 H 1.08007 * 125.78852 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 2.1944 -3.6028 -0.0005 12 6 1.8032 -4.7391 -0.5986 13 8 0.7088 -4.8090 -1.1056 14 6 2.7294 -5.9271 -0.6385 15 6 2.0457 -7.0824 -1.3726 16 8 0.9089 -7.5303 -0.6154 17 6 0.8735 -8.9641 -0.8138 18 6 2.3821 -9.3138 -0.8521 19 8 2.9646 -8.1736 -1.5152 20 6 0.3849 -2.5792 1.2301 21 6 -0.9352 -2.3261 1.2809 22 6 -1.3383 -2.5206 2.6220 23 6 -0.2405 -2.8816 3.3104 24 8 0.7990 -2.9213 2.4611 25 1 -0.4849 0.8401 0.0004 26 1 3.6459 -5.6559 -1.1624 27 1 2.9700 -6.2346 0.3792 28 1 1.7186 -6.7481 -2.3571 29 1 0.3906 -9.2155 -1.7581 30 1 0.3785 -9.4619 0.0199 31 1 2.5524 -10.2231 -1.4285 32 1 2.7817 -9.4184 0.1567 33 1 -1.5662 -2.0309 0.4555 34 1 -2.3361 -2.4022 3.0178 35 1 -0.2025 -3.1063 4.3662 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263660849.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:56 Heat of formation + Delta-G solvation = -154.301357 kcal Electronic energy + Delta-G solvation = -22481.900383 eV Core-core repulsion = 18833.583224 eV Total energy + Delta-G solvation = -3648.317159 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.31813 -40.53160 -39.30077 -35.77571 -35.04185 -33.27114 -32.06566 -31.68089 -29.71817 -28.67205 -26.61217 -23.93238 -23.32891 -22.53227 -20.66344 -20.17315 -19.24835 -17.81461 -16.94720 -16.92897 -16.65069 -16.21624 -15.95338 -15.18957 -15.06485 -14.64949 -14.54857 -14.38249 -13.63743 -13.24802 -12.95822 -12.77064 -12.52661 -12.32867 -11.85559 -11.72172 -11.53998 -11.43609 -11.24620 -11.10536 -10.96509 -10.35686 -10.34847 -10.07658 -9.87387 -9.59142 -9.36038 -8.80189 -8.63123 -7.22857 -6.20207 -4.38128 2.87651 2.93872 3.14437 3.21945 3.28805 3.33912 3.57585 3.92826 4.07561 4.22099 4.31380 4.42582 4.70137 4.80822 4.99460 5.07942 5.15719 5.26896 5.41079 5.56065 5.66016 5.74044 5.88090 5.91825 6.09308 6.39400 6.73641 6.95473 7.01145 7.17248 7.25953 7.41336 7.71505 7.72100 7.88070 8.38279 8.53240 8.80155 9.28783 10.78623 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.021736 B = 0.004991 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.852330 B = 5609.222029 C = 6409.454284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.298 3.702 10 H 0.079 0.921 11 O -0.349 6.349 12 C 0.459 3.541 13 O -0.506 6.506 14 C -0.131 4.131 15 C 0.247 3.753 16 O -0.359 6.359 17 C 0.013 3.987 18 C 0.020 3.980 19 O -0.384 6.384 20 C 0.027 3.973 21 C -0.179 4.179 22 C -0.217 4.217 23 C -0.089 4.089 24 O -0.177 6.177 25 H 0.268 0.732 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.130 0.870 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.503 -14.666 0.208 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.245 3.755 10 H 0.096 0.904 11 O -0.265 6.265 12 C 0.301 3.699 13 O -0.395 6.395 14 C -0.169 4.169 15 C 0.152 3.848 16 O -0.278 6.278 17 C -0.064 4.064 18 C -0.056 4.056 19 O -0.305 6.305 20 C -0.024 4.024 21 C -0.198 4.198 22 C -0.237 4.237 23 C -0.156 4.156 24 O -0.074 6.074 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.148 0.852 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.339 -14.430 0.154 14.619 hybrid contribution -0.206 1.028 0.280 1.085 sum 2.133 -13.403 0.435 13.578 Atomic orbital electron populations 1.70050 1.05920 1.27533 1.46701 1.24949 0.95130 0.99557 0.94025 0.86179 0.80024 0.81983 0.77784 1.19266 1.20557 1.20685 1.20939 0.94188 0.87560 1.54096 0.90360 1.19190 0.85720 0.81764 0.88851 0.90354 1.86537 1.48439 1.21954 1.69586 1.22981 0.86541 0.84766 0.75651 1.90646 1.22242 1.83094 1.43504 1.21696 0.99214 0.91070 1.04882 1.23787 0.78893 0.86743 0.95427 1.89438 1.47083 1.20048 1.71279 1.24397 0.96471 0.82135 1.03393 1.24210 0.92569 0.90032 0.98839 1.88885 1.44823 1.20203 1.76572 1.23520 0.94151 1.00090 0.84601 1.21202 0.94794 1.06987 0.96814 1.21680 0.98871 1.08005 0.95122 1.23591 0.86165 1.10290 0.95571 1.83986 1.36738 1.68414 1.18222 0.92227 0.85996 0.87157 0.88495 0.90571 0.87389 0.88215 0.90516 0.84149 0.85168 0.79911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.19 10.95 55.43 0.61 -23.58 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 3 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.53 -14.79 8.89 -34.44 -0.31 -15.09 16 8 H 0.08 2.14 7.81 -52.49 -0.41 1.73 16 9 C 0.30 8.02 2.42 -29.03 -0.07 7.95 16 10 H 0.08 2.25 7.15 -51.93 -0.37 1.88 16 11 O -0.35 -8.40 9.85 -41.36 -0.41 -8.81 16 12 C 0.46 9.68 7.81 36.00 0.28 9.96 16 13 O -0.51 -11.96 14.67 -23.81 -0.35 -12.31 16 14 C -0.13 -2.02 5.90 -27.88 -0.16 -2.18 16 15 C 0.25 3.60 3.55 37.16 0.13 3.73 16 16 O -0.36 -5.61 10.64 -64.51 -0.69 -6.30 16 17 C 0.01 0.13 7.95 38.16 0.30 0.43 16 18 C 0.02 0.18 8.07 38.16 0.31 0.49 16 19 O -0.38 -4.83 11.22 -59.04 -0.66 -5.49 16 20 C 0.03 0.73 5.53 -35.63 -0.20 0.53 16 21 C -0.18 -4.55 9.17 -39.70 -0.36 -4.91 16 22 C -0.22 -4.77 10.91 -39.70 -0.43 -5.20 16 23 C -0.09 -1.88 12.09 29.42 0.36 -1.52 16 24 O -0.18 -4.46 10.65 4.30 0.05 -4.41 16 25 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 26 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 27 H 0.11 1.58 8.14 -51.93 -0.42 1.15 16 28 H 0.10 1.44 7.95 -51.93 -0.41 1.03 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.14 3.65 7.87 -52.48 -0.41 3.24 16 34 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 35 H 0.18 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -33.22 310.49 -6.17 -39.38 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.12 Total: 4.89 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.25 Total: -4.03 kcal Atomic # 7 Polarization: -24.19 SS G_CDS: 0.61 Total: -23.58 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -2.06 Total: -37.32 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.22 -6.17 -39.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263660849.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.917 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds