Wall clock time and date at job start Tue Mar 31 2020 06:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38183 * 119.61249 * 2 1 4 4 C 1.38677 * 119.19539 * 180.20593 * 3 2 1 5 5 C 1.50697 * 120.78413 * 179.80045 * 4 3 2 6 6 N 1.46895 * 109.47143 * 269.72112 * 5 4 3 7 7 C 1.47961 * 111.00270 * 170.00071 * 6 5 4 8 8 C 1.53934 * 86.18427 * 222.41862 * 7 6 5 9 9 O 1.42895 * 113.73076 * 269.25870 * 8 7 6 10 10 C 1.50696 * 113.73266 * 138.07361 * 8 7 6 11 11 H 1.07999 * 120.00319 * 0.02562 * 10 8 7 12 12 C 1.37885 * 119.99717 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99913 * 180.02562 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 0.02562 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.47958 * 110.99863 * 70.64193 * 6 5 4 19 19 C 1.38615 * 118.42977 * 359.52804 * 4 3 2 20 20 C 1.38348 * 119.15295 * 0.25312 * 19 4 3 21 21 Cl 1.73597 * 119.63099 * 180.02562 * 20 19 4 22 22 N 1.31882 * 119.60887 * 179.72971 * 2 1 3 23 23 H 1.08997 * 109.46708 * 270.27419 * 1 2 3 24 24 H 1.09006 * 109.46714 * 30.27471 * 1 2 3 25 25 H 1.09000 * 109.47127 * 150.27192 * 1 2 3 26 26 H 1.08001 * 120.40440 * 0.02562 * 3 2 1 27 27 H 1.09005 * 109.46817 * 149.72210 * 5 4 3 28 28 H 1.08999 * 109.46747 * 29.72622 * 5 4 3 29 29 H 1.08996 * 113.76309 * 108.09300 * 7 6 5 30 30 H 1.09008 * 113.85816 * 336.74814 * 7 6 5 31 31 H 0.96697 * 114.00066 * 178.10080 * 9 8 7 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 33 33 H 1.08993 * 113.76569 * 23.26601 * 18 6 5 34 34 H 1.09005 * 113.75789 * 251.89882 * 18 6 5 35 35 H 1.08000 * 120.41659 * 180.22986 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1898 1.2013 0.0000 4 6 3.5765 1.1913 -0.0044 5 6 4.3572 2.4802 -0.0090 6 7 4.6123 2.8932 -1.3955 7 6 5.1631 4.2655 -1.4472 8 6 4.2133 4.4914 -2.6373 9 8 4.7973 4.1861 -3.9052 10 6 3.5221 5.8304 -2.6160 11 1 3.7166 6.5258 -1.8129 12 6 2.6422 6.1681 -3.6224 13 7 2.0394 7.3368 -3.6041 14 14 2.3065 4.9655 -5.0119 15 1 3.2716 5.2022 -6.1154 16 1 2.4580 3.5757 -4.5112 17 1 0.9227 5.1628 -5.5136 18 6 3.3661 3.3475 -2.0511 19 6 4.2276 -0.0325 0.0015 20 6 3.4775 -1.1949 0.0060 21 17 4.2800 -2.7342 0.0140 22 7 2.1586 -1.1466 0.0054 23 1 -0.3632 0.0049 1.0276 24 1 -0.3633 0.8876 -0.5181 25 1 -0.3633 -0.8924 -0.5096 26 1 1.6501 2.1368 0.0004 27 1 5.3062 2.3321 0.5064 28 1 3.7836 3.2542 0.5011 29 1 6.2191 4.3051 -1.7144 30 1 4.9230 4.8703 -0.5727 31 1 4.1949 4.2989 -4.6532 32 1 1.4207 7.5745 -4.3124 33 1 2.5992 3.6824 -1.3528 34 1 2.9863 2.6535 -2.8011 35 1 5.3066 -0.0777 0.0021 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321095313.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:46 Heat of formation + Delta-G solvation = 25.844363 kcal Electronic energy + Delta-G solvation = -19850.935314 eV Core-core repulsion = 16683.431776 eV Total energy + Delta-G solvation = -3167.503538 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.57778 -39.30509 -36.74844 -35.34120 -33.44103 -32.50009 -32.40990 -28.93924 -27.76649 -26.18580 -25.50599 -23.38480 -22.74145 -20.69147 -19.19518 -17.43025 -17.03003 -16.48161 -16.23107 -15.75320 -15.50539 -14.80332 -14.46791 -14.10288 -13.56928 -13.38424 -13.05974 -13.02056 -12.80146 -12.49096 -12.20909 -12.04463 -11.80730 -11.53373 -11.40698 -11.21370 -11.03766 -10.68094 -10.57123 -10.05694 -9.84393 -9.67638 -9.29707 -8.94557 -8.88001 -8.67485 -8.16158 -6.39806 -4.44544 0.88722 1.08693 1.72949 3.02336 3.08696 3.17263 3.51312 4.06885 4.22406 4.40141 4.56379 4.81122 4.83085 4.98463 5.04701 5.25562 5.34763 5.42439 5.46123 5.51136 5.58932 5.71455 5.82576 5.87146 5.90460 6.07373 6.24035 6.35525 6.46411 6.51896 6.77615 6.79680 7.26060 7.56418 7.66985 8.07224 8.60477 8.62271 9.19603 10.72641 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.004735 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.300199 B = 5912.317404 C = 6321.624009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.145 3.855 3 C -0.161 4.161 4 C -0.006 4.006 5 C 0.052 3.948 6 N -0.472 5.472 7 C 0.024 3.976 8 C 0.202 3.798 9 O -0.551 6.551 10 C -0.538 4.538 11 H 0.086 0.914 12 C 0.080 3.920 13 N -0.881 5.881 14 Si 0.858 3.142 15 H -0.267 1.267 16 H -0.254 1.254 17 H -0.285 1.285 18 C -0.029 4.029 19 C -0.144 4.144 20 C 0.178 3.822 21 Cl -0.040 7.040 22 N -0.486 5.486 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.142 0.858 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.348 0.652 32 H 0.269 0.731 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.082 -13.398 8.093 15.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.007 3.993 3 C -0.181 4.181 4 C -0.015 4.015 5 C -0.076 4.076 6 N -0.194 5.194 7 C -0.104 4.104 8 C 0.161 3.839 9 O -0.361 6.361 10 C -0.576 4.576 11 H 0.104 0.896 12 C -0.125 4.125 13 N -0.517 5.517 14 Si 0.687 3.313 15 H -0.194 1.194 16 H -0.179 1.179 17 H -0.212 1.212 18 C -0.158 4.158 19 C -0.165 4.165 20 C 0.014 3.986 21 Cl -0.011 7.011 22 N -0.199 5.199 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.160 0.840 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.200 0.800 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.275 -14.847 8.120 16.924 hybrid contribution -0.681 0.741 -0.687 1.219 sum -0.406 -14.105 7.432 15.949 Atomic orbital electron populations 1.20748 0.88113 1.03943 1.03284 1.21112 0.96905 0.86946 0.94320 1.22069 0.94405 0.99701 1.01945 1.20225 0.93497 0.95081 0.92671 1.21683 0.99102 0.92540 0.94297 1.68713 1.17046 1.23071 1.10608 1.24052 1.00655 0.87648 0.98038 1.20439 0.89761 0.92053 0.81646 1.86466 1.42636 1.91248 1.15790 1.21379 1.24721 1.00139 1.11374 0.89576 1.24994 0.94965 0.94971 0.97577 1.69870 1.27946 1.20289 1.33587 0.87336 0.78224 0.82437 0.83332 1.19360 1.17944 1.21207 1.25068 0.93032 0.98802 0.98933 1.21672 1.01689 0.90493 1.02656 1.21498 0.89828 0.87154 1.00147 1.98389 1.76885 1.29265 1.96584 1.66755 1.08265 1.30478 1.14409 0.90155 0.90084 0.90308 0.83973 0.89583 0.92377 0.89776 0.90526 0.80005 0.92033 0.90804 0.90927 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.17 36.01 0.37 -0.67 16 2 C 0.14 1.93 6.78 -82.59 -0.56 1.37 16 3 C -0.16 -2.18 8.77 -39.44 -0.35 -2.53 16 4 C -0.01 -0.09 5.14 -104.32 -0.54 -0.63 16 5 C 0.05 0.75 5.02 -4.98 -0.02 0.73 16 6 N -0.47 -8.63 6.25 -239.68 -1.50 -10.13 16 7 C 0.02 0.47 7.36 -2.77 -0.02 0.45 16 8 C 0.20 4.64 1.05 -90.84 -0.10 4.54 16 9 O -0.55 -13.33 13.32 -35.23 -0.47 -13.80 16 10 C -0.54 -14.14 9.20 -34.44 -0.32 -14.46 16 11 H 0.09 2.41 8.06 -52.49 -0.42 1.99 16 12 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 13 N -0.88 -25.04 13.96 55.43 0.77 -24.26 16 14 Si 0.86 19.59 24.34 -169.99 -4.14 15.45 16 15 H -0.27 -5.96 7.06 56.52 0.40 -5.56 16 16 H -0.25 -5.56 5.28 56.52 0.30 -5.27 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 C -0.03 -0.59 5.57 -2.76 -0.02 -0.61 16 19 C -0.14 -1.97 9.59 -39.40 -0.38 -2.35 16 20 C 0.18 2.53 7.27 -17.45 -0.13 2.40 16 21 Cl -0.04 -0.49 29.11 -51.86 -1.51 -2.00 16 22 N -0.49 -7.18 10.25 -6.62 -0.07 -7.25 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.14 1.76 7.56 -52.49 -0.40 1.37 16 27 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 28 H 0.06 0.81 7.65 -51.93 -0.40 0.41 16 29 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.08 1.38 7.75 -51.92 -0.40 0.98 16 31 H 0.35 8.14 3.31 45.56 0.15 8.29 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.07 1.43 7.17 -51.93 -0.37 1.06 16 34 H 0.07 1.54 6.98 -51.93 -0.36 1.18 16 35 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 303.51 15.07 4.57 4.57 Total: -1.00 -29.43 303.51 -8.46 -37.89 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.98 Total: 9.25 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.15 Total: -9.71 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: -0.79 Total: -41.64 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.47 Total: -13.80 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.14 Total: 15.45 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.51 Total: -2.00 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.43 -8.46 -37.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321095313.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.732 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds