Wall clock time and date at job start Tue Mar 31 2020 06:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38114 * 120.02855 * 2 1 4 4 C 1.38383 * 120.05762 * 180.30135 * 3 2 1 5 5 Cl 1.73593 * 119.94606 * 179.74632 * 4 3 2 6 6 C 1.38383 * 120.11085 * 359.72113 * 4 3 2 7 7 C 1.38115 * 120.05595 * 359.97438 * 6 4 3 8 8 C 1.50701 * 120.02632 * 180.02562 * 7 6 4 9 9 C 1.38853 * 119.94637 * 0.02562 * 7 6 4 10 10 N 1.39998 * 120.05649 * 180.02562 * 9 7 6 11 11 C 1.34773 * 119.99689 * 128.03366 * 10 9 7 12 12 O 1.21582 * 120.00595 * 356.67429 * 11 10 9 13 13 N 1.34777 * 119.99605 * 176.67738 * 11 10 9 14 14 C 1.46499 * 119.99823 * 179.97438 * 13 11 10 15 15 C 1.50704 * 109.47237 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99502 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00380 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99734 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00250 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47416 * 60.00119 * 19 17 15 21 21 H 1.48500 * 109.47361 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46908 * 299.99805 * 19 17 15 23 23 H 1.09005 * 109.46633 * 278.21360 * 1 2 3 24 24 H 1.08995 * 109.47240 * 38.21386 * 1 2 3 25 25 H 1.09000 * 109.46689 * 158.21869 * 1 2 3 26 26 H 1.07997 * 119.97173 * 0.04863 * 3 2 1 27 27 H 1.07999 * 119.97209 * 179.97438 * 6 4 3 28 28 H 1.09002 * 109.47166 * 269.97944 * 8 7 6 29 29 H 1.09010 * 109.46990 * 29.97858 * 8 7 6 30 30 H 1.08997 * 109.47167 * 149.97803 * 8 7 6 31 31 H 0.97000 * 119.99797 * 308.30063 * 10 9 7 32 32 H 0.96994 * 120.00159 * 0.02562 * 13 11 10 33 33 H 1.09007 * 109.47317 * 299.99422 * 14 13 11 34 34 H 1.08996 * 109.47804 * 60.00058 * 14 13 11 35 35 H 0.96999 * 119.99986 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1958 0.0000 4 6 3.5820 1.1965 -0.0063 5 17 4.4478 2.7011 -0.0129 6 6 4.2769 -0.0003 -0.0068 7 6 3.5904 -1.1987 -0.0004 8 6 4.3478 -2.5016 -0.0004 9 6 2.2019 -1.2022 0.0059 10 7 1.5038 -2.4156 0.0129 11 6 0.5486 -2.6382 0.9373 12 8 0.3347 -1.8106 1.8019 13 7 -0.1696 -3.7782 0.9032 14 6 -1.2075 -4.0203 1.9083 15 6 -1.8569 -5.3552 1.6483 16 1 -1.5289 -5.9626 0.8177 17 6 -2.8689 -5.8016 2.4714 18 7 -3.2679 -5.0622 3.4832 19 14 -3.6733 -7.4564 2.1496 20 1 -2.6487 -8.5284 2.2274 21 1 -4.7255 -7.7019 3.1684 22 1 -4.2858 -7.4543 0.7968 23 1 -0.3633 0.1468 1.0172 24 1 -0.3633 0.8074 -0.6357 25 1 -0.3633 -0.9543 -0.3813 26 1 1.6582 2.1310 0.0008 27 1 5.3568 0.0029 -0.0121 28 1 4.5254 -2.8187 -1.0281 29 1 5.3024 -2.3669 0.5085 30 1 3.7635 -3.2615 0.5185 31 1 1.7102 -3.0977 -0.6452 32 1 0.0013 -4.4386 0.2136 33 1 -0.7582 -4.0218 2.9015 34 1 -1.9596 -3.2336 1.8509 35 1 -3.9801 -5.3760 4.0621 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321328008.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:29 Heat of formation + Delta-G solvation = -21.453806 kcal Electronic energy + Delta-G solvation = -19437.288859 eV Core-core repulsion = 16267.734318 eV Total energy + Delta-G solvation = -3169.554541 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60623 -38.61984 -36.60988 -34.52934 -34.19638 -33.49032 -32.38116 -30.37994 -27.63785 -26.82943 -26.52358 -23.08956 -21.63541 -21.10381 -20.16598 -18.33776 -17.48587 -16.28916 -16.00021 -15.82287 -14.89109 -14.50845 -14.35426 -14.07764 -13.75002 -13.23624 -13.07333 -13.05813 -12.83678 -12.59199 -12.28173 -12.01747 -11.89227 -11.52403 -11.42691 -11.01709 -11.00513 -10.90667 -10.83835 -10.34649 -9.72184 -9.49369 -9.44223 -8.78262 -8.66400 -8.19631 -7.79963 -6.19866 -4.27070 1.10485 1.24931 2.08315 3.12866 3.22924 3.28494 3.30230 3.49315 3.82098 4.28769 4.65232 4.72595 4.90538 5.05452 5.16398 5.24600 5.31905 5.48407 5.50635 5.63342 5.72374 5.94702 6.01122 6.15655 6.16990 6.37573 6.51620 6.60934 6.95619 7.05293 7.38467 7.45624 7.49152 7.78832 7.95695 8.65884 8.81249 9.18746 9.40479 10.90205 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.039380 B = 0.003347 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.845931 B = 8363.777423 C = 8795.298517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.057 4.057 3 C -0.105 4.105 4 C -0.041 4.041 5 Cl -0.080 7.080 6 C -0.107 4.107 7 C -0.091 4.091 8 C -0.112 4.112 9 C 0.177 3.823 10 N -0.700 5.700 11 C 0.691 3.309 12 O -0.579 6.579 13 N -0.724 5.724 14 C 0.268 3.732 15 C -0.545 4.545 16 H 0.062 0.938 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.091 0.909 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.402 0.598 32 H 0.388 0.612 33 H 0.026 0.974 34 H 0.027 0.973 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.234 8.765 -10.379 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.060 4.060 3 C -0.124 4.124 4 C -0.068 4.068 5 Cl -0.051 7.051 6 C -0.126 4.126 7 C -0.094 4.094 8 C -0.169 4.169 9 C 0.082 3.918 10 N -0.351 5.351 11 C 0.391 3.609 12 O -0.456 6.456 13 N -0.376 5.376 14 C 0.147 3.853 15 C -0.583 4.583 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 H 0.109 0.891 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.237 0.763 32 H 0.220 0.780 33 H 0.044 0.956 34 H 0.045 0.955 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.852 9.581 -9.359 19.268 hybrid contribution -0.197 -1.368 -0.675 1.538 sum 13.655 8.212 -10.034 18.830 Atomic orbital electron populations 1.20846 0.89779 1.02019 1.03499 1.19866 0.97020 0.91072 0.98018 1.20731 0.91694 0.98292 1.01697 1.20755 0.92269 0.86688 1.07068 1.98348 1.76970 1.32685 1.97128 1.20633 0.99908 0.89725 1.02327 1.19755 0.92114 0.95588 1.01922 1.20727 0.99916 0.93899 1.02340 1.17129 0.89382 0.85331 0.99967 1.42753 1.39984 1.17085 1.35232 1.16114 0.79372 0.83684 0.81705 1.90913 1.70540 1.46203 1.37978 1.45762 1.38915 1.18226 1.34695 1.19022 0.83980 0.96287 0.86014 1.21167 1.19639 1.03235 1.14268 0.91968 1.24935 0.96443 0.97835 0.94717 1.69960 1.28590 1.37495 1.16131 0.86465 0.79017 0.83294 0.78071 1.20074 1.21049 1.20067 0.89108 0.92386 0.91728 0.84898 0.84977 0.91015 0.91164 0.90986 0.76252 0.78011 0.95610 0.95546 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 8.21 36.01 0.30 -1.32 16 2 C -0.06 -0.85 5.48 -104.44 -0.57 -1.42 16 3 C -0.10 -1.37 9.51 -39.57 -0.38 -1.75 16 4 C -0.04 -0.50 6.32 -39.47 -0.25 -0.75 16 5 Cl -0.08 -0.87 28.95 -51.86 -1.50 -2.38 16 6 C -0.11 -1.23 9.48 -39.57 -0.38 -1.61 16 7 C -0.09 -1.12 5.90 -104.44 -0.62 -1.73 16 8 C -0.11 -1.08 9.66 36.01 0.35 -0.73 16 9 C 0.18 2.57 5.85 -83.67 -0.49 2.09 16 10 N -0.70 -10.18 3.93 -14.22 -0.06 -10.24 16 11 C 0.69 13.36 6.72 -86.92 -0.58 12.78 16 12 O -0.58 -13.48 13.36 5.29 0.07 -13.41 16 13 N -0.72 -14.57 5.55 -66.41 -0.37 -14.94 16 14 C 0.27 6.88 5.43 -5.19 -0.03 6.85 16 15 C -0.54 -14.38 9.28 -34.44 -0.32 -14.70 16 16 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.88 -25.63 13.29 55.43 0.74 -24.89 16 19 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H 0.09 1.62 7.07 -51.93 -0.37 1.25 16 24 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 25 H 0.06 1.07 6.16 -51.93 -0.32 0.75 16 26 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.59 8.09 -51.92 -0.42 0.17 16 30 H 0.07 0.77 7.44 -51.93 -0.39 0.38 16 31 H 0.40 4.49 8.67 -40.82 -0.35 4.14 16 32 H 0.39 6.58 8.34 -40.82 -0.34 6.24 16 33 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 313.57 15.07 4.73 4.73 Total: -1.00 -31.01 313.57 -8.74 -39.74 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -4.26 Total: 6.58 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.06 Total: -0.63 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: 0.31 Total: -50.07 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.07 Total: -13.41 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.01 -8.74 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321328008.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.290 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds