Wall clock time and date at job start Tue Mar 31 2020 05:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33380 * 122.55955 * 2 1 4 4 S 1.75857 * 109.70218 * 180.02562 * 3 2 1 5 5 C 1.75870 * 91.04438 * 359.82737 * 4 3 2 6 6 C 1.33785 * 109.59866 * 0.30204 * 5 4 3 7 7 N 1.40808 * 122.61648 * 179.90674 * 6 5 4 8 8 C 1.34773 * 119.99943 * 7.38369 * 7 6 5 9 9 O 1.21602 * 120.00190 * 5.75762 * 8 7 6 10 10 N 1.34778 * 120.00086 * 185.75186 * 8 7 6 11 11 C 1.47584 * 134.49507 * 180.02562 * 10 8 7 12 12 C 1.53940 * 86.11681 * 155.36240 * 11 10 8 13 13 O 1.42900 * 113.74324 * 269.15423 * 12 11 10 14 14 C 1.50703 * 113.73981 * 137.95425 * 12 11 10 15 15 H 1.07999 * 119.99723 * 6.15748 * 14 12 11 16 16 C 1.37883 * 120.00029 * 186.15466 * 14 12 11 17 17 N 1.31511 * 119.99983 * 184.76869 * 16 14 12 18 18 Si 1.86796 * 119.99814 * 4.76969 * 16 14 12 19 19 H 1.48500 * 109.47271 * 269.99959 * 18 16 14 20 20 H 1.48507 * 109.47446 * 29.99956 * 18 16 14 21 21 H 1.48501 * 109.46886 * 149.99916 * 18 16 14 22 22 C 1.47811 * 134.45740 * 359.87720 * 10 8 7 23 23 H 1.08998 * 109.47326 * 269.98372 * 1 2 3 24 24 H 1.09002 * 109.46874 * 29.98332 * 1 2 3 25 25 H 1.09004 * 109.47499 * 149.97669 * 1 2 3 26 26 H 1.08004 * 125.14442 * 0.02562 * 3 2 1 27 27 H 1.07995 * 125.19910 * 180.18037 * 5 4 3 28 28 H 0.96999 * 119.99940 * 187.39486 * 7 6 5 29 29 H 1.09003 * 113.76424 * 41.05969 * 11 10 8 30 30 H 1.09000 * 113.77004 * 269.67068 * 11 10 8 31 31 H 0.96703 * 113.99779 * 173.00345 * 13 12 11 32 32 H 0.97008 * 119.99939 * 354.99504 * 17 16 14 33 33 H 1.08996 * 113.76958 * 90.37361 * 22 10 8 34 34 H 1.08997 * 113.83556 * 318.90937 * 22 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2248 1.1242 0.0000 4 16 3.9393 0.7328 -0.0007 5 6 3.5793 -0.9886 0.0043 6 6 2.2537 -1.1699 -0.0005 7 7 1.6625 -2.4478 0.0000 8 6 2.4294 -3.5451 0.1553 9 8 3.6149 -3.4287 0.3995 10 7 1.8823 -4.7714 0.0402 11 6 2.4008 -6.1493 0.1444 12 6 0.9587 -6.5534 0.5002 13 8 0.6838 -6.5298 1.9023 14 6 0.5032 -7.8260 -0.1664 15 1 1.2023 -8.4136 -0.7429 16 6 -0.8059 -8.2400 -0.0402 17 7 -1.1811 -9.3963 -0.5419 18 14 -2.0464 -7.1586 0.8435 19 1 -2.0598 -7.4997 2.2887 20 1 -1.6684 -5.7323 0.6751 21 1 -3.3972 -7.3838 0.2691 22 6 0.5212 -5.2758 -0.2384 23 1 -0.3634 -0.0003 1.0276 24 1 -0.3633 0.8902 -0.5136 25 1 -0.3634 -0.8898 -0.5142 26 1 1.8150 2.1235 0.0004 27 1 4.3156 -1.7786 0.0084 28 1 0.7032 -2.5383 -0.1117 29 1 3.1106 -6.2910 0.9594 30 1 2.7513 -6.5596 -0.8027 31 1 -0.2458 -6.6783 2.1234 32 1 -0.5563 -9.9245 -1.0631 33 1 0.3178 -5.4289 -1.2982 34 1 -0.2669 -4.7217 0.2716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330151948.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:00 Heat of formation + Delta-G solvation = 11.259416 kcal Electronic energy + Delta-G solvation = -19921.532263 eV Core-core repulsion = 16755.439980 eV Total energy + Delta-G solvation = -3166.092283 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.50077 -39.00982 -37.36297 -34.46935 -33.69348 -32.67818 -30.71570 -28.80180 -27.01709 -25.78812 -24.91375 -23.14740 -20.47608 -19.45092 -19.12835 -18.15425 -17.94828 -16.82408 -16.11970 -15.68536 -15.50190 -14.87361 -14.48588 -14.17317 -13.94556 -13.54175 -13.19225 -13.07445 -12.87892 -12.37909 -12.29257 -12.14340 -12.10070 -12.01879 -11.44276 -10.93196 -10.87977 -10.43116 -10.36519 -10.03927 -9.62654 -9.51581 -9.06373 -8.65184 -8.56445 -8.22334 -7.63482 -6.77234 -4.54022 1.06408 1.68804 2.00315 2.56974 2.83826 3.04859 3.06823 3.25601 3.58924 4.07557 4.11612 4.69804 4.79350 4.94664 5.06424 5.19871 5.42433 5.47582 5.53057 5.71984 5.85443 5.93662 5.94930 6.05530 6.15016 6.17983 6.25398 6.40020 6.54075 6.82615 7.37803 7.43729 8.01379 8.31631 8.42559 8.53489 8.77560 9.22081 10.58878 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.031189 B = 0.004390 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.549256 B = 6376.595594 C = 6983.283766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.117 4.117 3 C -0.208 4.208 4 S 0.088 5.912 5 C -0.239 4.239 6 C 0.149 3.851 7 N -0.669 5.669 8 C 0.725 3.275 9 O -0.585 6.585 10 N -0.650 5.650 11 C 0.150 3.850 12 C 0.199 3.801 13 O -0.555 6.555 14 C -0.611 4.611 15 H 0.072 0.928 16 C 0.035 3.965 17 N -0.890 5.890 18 Si 1.031 2.969 19 H -0.275 1.275 20 H -0.267 1.267 21 H -0.279 1.279 22 C 0.058 3.942 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.063 0.937 26 H 0.165 0.835 27 H 0.199 0.801 28 H 0.405 0.595 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.355 0.645 32 H 0.274 0.726 33 H 0.093 0.907 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.256 17.995 -0.225 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C -0.344 4.344 4 S 0.349 5.651 5 C -0.378 4.378 6 C 0.043 3.957 7 N -0.315 5.315 8 C 0.429 3.571 9 O -0.465 6.465 10 N -0.387 5.387 11 C 0.028 3.972 12 C 0.157 3.843 13 O -0.364 6.364 14 C -0.649 4.649 15 H 0.091 0.909 16 C -0.173 4.173 17 N -0.523 5.523 18 Si 0.860 3.140 19 H -0.202 1.202 20 H -0.193 1.193 21 H -0.205 1.205 22 C -0.065 4.065 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.183 0.817 27 H 0.216 0.784 28 H 0.240 0.760 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.205 0.795 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.592 19.165 0.479 19.345 hybrid contribution -0.834 -1.043 -0.717 1.516 sum 1.758 18.122 -0.238 18.208 Atomic orbital electron populations 1.20490 0.89607 1.02739 1.02550 1.18548 0.97331 0.90936 1.06386 1.25157 0.96410 1.01610 1.11219 1.84135 1.05602 1.01048 1.74294 1.26212 0.99503 0.98699 1.13411 1.16415 0.91370 0.84046 1.03889 1.42468 1.10715 1.02690 1.75645 1.15397 0.84184 0.79326 0.78233 1.90689 1.14320 1.84427 1.57047 1.49361 1.13476 1.03344 1.72547 1.23179 0.97828 0.75388 1.00853 1.20484 0.91957 0.92313 0.79510 1.86461 1.30078 1.95017 1.24820 1.22267 0.98132 1.08313 1.36196 0.90949 1.25816 0.97733 0.97057 0.96666 1.70762 1.40043 1.10214 1.31278 0.84314 0.77082 0.75776 0.76856 1.20226 1.19340 1.20524 1.24832 0.83405 0.96285 1.01979 0.90930 0.91040 0.91831 0.81740 0.78438 0.75957 0.90596 0.89083 0.79464 0.91506 0.88910 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.87 9.86 36.01 0.36 -0.52 16 2 C -0.12 -1.42 5.81 -106.12 -0.62 -2.04 16 3 C -0.21 -2.26 10.97 29.03 0.32 -1.94 16 4 S 0.09 1.05 23.33 -107.50 -2.51 -1.46 16 5 C -0.24 -3.77 9.99 29.17 0.29 -3.48 16 6 C 0.15 2.27 6.54 -85.09 -0.56 1.71 16 7 N -0.67 -10.78 5.41 -15.19 -0.08 -10.86 16 8 C 0.72 14.20 8.69 -86.92 -0.76 13.45 16 9 O -0.58 -12.80 13.96 5.28 0.07 -12.73 16 10 N -0.65 -12.80 3.61 -183.89 -0.66 -13.46 16 11 C 0.15 3.08 8.23 -2.97 -0.02 3.06 16 12 C 0.20 4.38 1.06 -90.86 -0.10 4.28 16 13 O -0.55 -12.53 13.43 -35.23 -0.47 -13.01 16 14 C -0.61 -15.36 9.04 -34.44 -0.31 -15.67 16 15 H 0.07 1.95 8.04 -52.49 -0.42 1.53 16 16 C 0.03 0.90 5.47 -17.82 -0.10 0.80 16 17 N -0.89 -24.79 13.70 55.43 0.76 -24.03 16 18 Si 1.03 21.20 24.83 -169.99 -4.22 16.98 16 19 H -0.28 -5.41 6.95 56.52 0.39 -5.02 16 20 H -0.27 -4.76 4.67 56.52 0.26 -4.50 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 C 0.06 1.10 6.50 -2.85 -0.02 1.08 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 25 H 0.06 0.57 6.93 -51.93 -0.36 0.21 16 26 H 0.17 1.30 8.06 -52.48 -0.42 0.87 16 27 H 0.20 3.59 5.43 -52.49 -0.29 3.30 16 28 H 0.40 5.59 6.90 -40.82 -0.28 5.31 16 29 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 31 H 0.36 7.39 4.48 45.56 0.20 7.59 16 32 H 0.27 7.62 8.72 -40.82 -0.36 7.26 16 33 H 0.09 1.70 8.09 -51.93 -0.42 1.28 16 34 H 0.07 1.24 6.41 -51.93 -0.33 0.90 16 LS Contribution 294.72 15.07 4.44 4.44 Total: -1.00 -29.82 294.72 -7.49 -37.31 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -3.31 Total: 16.09 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.51 Total: 0.73 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.01 Total: -48.36 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.40 Total: -25.74 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.22 Total: 16.98 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.51 Total: -1.46 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.82 -7.49 -37.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330151948.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.571 kcal (2) G-P(sol) polarization free energy of solvation -29.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds