Wall clock time and date at job start Tue Mar 31 2020 06:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86809 * 119.99808 * 2 1 4 4 H 1.48506 * 109.46904 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46785 * 299.99901 * 3 2 1 6 6 H 1.48493 * 109.47089 * 59.99759 * 3 2 1 7 7 C 1.38762 * 120.00457 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00694 * 179.97438 * 7 2 1 9 9 O 1.34886 * 119.99749 * 0.02562 * 7 2 1 10 10 C 1.34808 * 116.99846 * 180.02562 * 9 7 2 11 11 O 1.21560 * 119.99952 * 359.97438 * 10 9 7 12 12 C 1.47197 * 119.99728 * 180.02562 * 10 9 7 13 13 C 1.47055 * 127.20389 * 354.24181 * 12 10 9 14 14 C 1.34159 * 105.95360 * 180.02562 * 13 12 10 15 15 O 1.34214 * 109.15268 * 359.73176 * 14 13 12 16 16 C 1.33644 * 110.92492 * 0.45278 * 15 14 13 17 17 C 1.50702 * 125.81165 * 179.81640 * 16 15 14 18 18 O 1.42905 * 109.54260 * 233.68131 * 17 16 15 19 19 C 1.53184 * 109.61829 * 353.90046 * 17 16 15 20 20 C 1.53093 * 109.16084 * 176.89039 * 19 17 16 21 21 O 1.42896 * 109.41639 * 302.39056 * 20 19 17 22 22 C 1.42905 * 114.09718 * 61.16425 * 21 20 19 23 23 C 1.53094 * 109.41337 * 298.83910 * 22 21 20 24 24 H 0.96997 * 120.00721 * 359.97438 * 1 2 3 25 25 H 1.08005 * 127.02348 * 359.97438 * 13 12 10 26 26 H 1.07996 * 125.41882 * 180.02562 * 14 13 12 27 27 H 0.96692 * 113.99839 * 57.52088 * 18 17 16 28 28 H 1.08994 * 109.52245 * 296.80218 * 19 17 16 29 29 H 1.08998 * 109.51969 * 56.98975 * 19 17 16 30 30 H 1.09002 * 109.47378 * 182.41100 * 20 19 17 31 31 H 1.08996 * 109.48620 * 62.38271 * 20 19 17 32 32 H 1.09000 * 109.47997 * 178.85632 * 22 21 20 33 33 H 1.08994 * 109.49139 * 58.82747 * 22 21 20 34 34 H 1.09006 * 109.52342 * 297.70115 * 23 22 21 35 35 H 1.08996 * 109.57467 * 177.54715 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3465 -0.0006 5 1 1.8896 2.3964 -1.2125 6 1 1.8896 2.3965 1.2124 7 6 2.0083 -1.2017 0.0005 8 1 3.0883 -1.2017 0.0001 9 8 1.3339 -2.3698 0.0005 10 6 2.0682 -3.5004 0.0016 11 8 3.2821 -3.4367 0.0021 12 6 1.3999 -4.8119 0.0011 13 6 -0.0422 -5.0751 0.1170 14 6 -0.1787 -6.4089 0.0689 15 8 1.0323 -6.9707 -0.0697 16 6 1.9895 -6.0387 -0.1066 17 6 3.4672 -6.2976 -0.2493 18 8 4.1707 -5.6494 0.8124 19 6 3.7329 -7.8052 -0.1946 20 6 5.2257 -8.0608 -0.4181 21 8 5.6207 -7.5022 -1.6726 22 6 5.4395 -6.0876 -1.7644 23 6 3.9553 -5.7527 -1.5950 24 1 -0.4851 0.8400 0.0004 25 1 -0.8305 -4.3441 0.2206 26 1 -1.1145 -6.9448 0.1273 27 1 3.8867 -5.9212 1.6958 28 1 3.4392 -8.1917 0.7813 29 1 3.1572 -8.3050 -0.9736 30 1 5.4139 -9.1344 -0.4228 31 1 5.7984 -7.5949 0.3838 32 1 5.7818 -5.7398 -2.7391 33 1 6.0149 -5.5956 -0.9803 34 1 3.3840 -6.2110 -2.4024 35 1 3.8196 -4.6715 -1.6211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330352389.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:18 Heat of formation + Delta-G solvation = -152.576685 kcal Electronic energy + Delta-G solvation = -23034.163120 eV Core-core repulsion = 19385.920749 eV Total energy + Delta-G solvation = -3648.242371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.33692 -39.54276 -38.64480 -36.43145 -35.00935 -32.55838 -32.21454 -32.04770 -31.04655 -29.22363 -25.86333 -24.62632 -23.73524 -22.74775 -21.15602 -20.09899 -19.25022 -17.83989 -17.62513 -16.49183 -16.33494 -16.03869 -15.82482 -15.33824 -14.93733 -14.61127 -14.34424 -14.26351 -14.05079 -13.76999 -12.84603 -12.81552 -12.43045 -12.34905 -12.05326 -11.82009 -11.58229 -11.31845 -11.24578 -10.97541 -10.52100 -10.40565 -10.29177 -10.00515 -9.78671 -9.44264 -9.36551 -8.94752 -8.56559 -8.38831 -6.41832 -4.05293 1.64924 2.44043 2.96098 3.15489 3.19624 3.27237 3.93630 3.95676 4.11647 4.22944 4.54240 4.62710 4.73173 4.89456 5.01648 5.17312 5.23794 5.30823 5.52579 5.55858 5.61859 5.67376 5.77056 5.90313 5.92421 5.99671 6.20586 6.25831 6.42607 6.62493 6.87611 7.25991 7.28468 7.41997 7.79935 7.96555 8.76552 9.07535 9.91152 10.76654 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.021375 B = 0.005523 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.601421 B = 5068.565152 C = 6077.860436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.373 4.373 8 H 0.098 0.902 9 O -0.209 6.209 10 C 0.456 3.544 11 O -0.523 6.523 12 C -0.158 4.158 13 C -0.172 4.172 14 C -0.053 4.053 15 O -0.174 6.174 16 C -0.002 4.002 17 C 0.232 3.768 18 O -0.510 6.510 19 C -0.182 4.182 20 C 0.068 3.932 21 O -0.388 6.388 22 C 0.069 3.931 23 C -0.142 4.142 24 H 0.269 0.731 25 H 0.163 0.837 26 H 0.206 0.794 27 H 0.370 0.630 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -14.723 -0.021 15.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.449 4.449 8 H 0.115 0.885 9 O -0.117 6.117 10 C 0.303 3.697 11 O -0.420 6.420 12 C -0.160 4.160 13 C -0.191 4.191 14 C -0.118 4.118 15 O -0.071 6.071 16 C -0.054 4.054 17 C 0.190 3.810 18 O -0.314 6.314 19 C -0.220 4.220 20 C -0.009 4.009 21 O -0.307 6.307 22 C -0.007 4.007 23 C -0.180 4.180 24 H 0.078 0.922 25 H 0.180 0.820 26 H 0.222 0.778 27 H 0.216 0.784 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.048 -14.643 -0.697 15.208 hybrid contribution -0.677 0.923 0.798 1.395 sum 3.371 -13.720 0.101 14.128 Atomic orbital electron populations 1.69999 1.06041 1.27564 1.46498 1.25343 0.95812 0.98865 0.96384 0.85614 0.79520 0.80051 0.78092 1.18872 1.20199 1.20199 1.21316 0.92486 0.79768 1.51311 0.88474 1.83941 1.39075 1.13099 1.75574 1.19695 0.85623 0.84358 0.79999 1.90701 1.13959 1.87365 1.49958 1.20693 0.93176 0.92260 1.09901 1.23137 0.95884 0.95815 1.04308 1.23840 0.86847 0.93402 1.07759 1.83686 1.15001 1.36984 1.71471 1.23384 0.91449 0.86146 1.04447 1.19291 0.80430 0.90988 0.90305 1.86854 1.60381 1.68336 1.15782 1.22893 0.99004 0.96325 1.03742 1.22452 0.92981 0.98662 0.86807 1.87875 1.85330 1.22329 1.35177 1.22526 0.94840 0.80768 1.02586 1.22289 0.97309 1.05417 0.92962 0.92151 0.81975 0.77760 0.78365 0.90377 0.89805 0.89075 0.92388 0.88719 0.91704 0.90496 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.35 13.67 55.48 0.76 -24.59 16 2 C 0.04 1.12 5.49 -17.53 -0.10 1.03 16 3 Si 0.94 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.26 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.37 -11.05 9.65 30.93 0.30 -10.75 16 8 H 0.10 2.89 6.86 -52.49 -0.36 2.53 16 9 O -0.21 -6.11 9.66 -21.94 -0.21 -6.32 16 10 C 0.46 11.64 7.64 34.37 0.26 11.90 16 11 O -0.52 -13.65 11.33 -26.57 -0.30 -13.96 16 12 C -0.16 -3.28 6.22 -103.30 -0.64 -3.92 16 13 C -0.17 -3.08 11.05 -37.45 -0.41 -3.49 16 14 C -0.05 -0.74 12.03 29.30 0.35 -0.38 16 15 O -0.17 -2.65 9.94 7.68 0.08 -2.58 16 16 C 0.00 -0.04 5.91 -34.92 -0.21 -0.25 16 17 C 0.23 3.63 0.54 -91.59 -0.05 3.58 16 18 O -0.51 -8.48 9.84 -56.88 -0.56 -9.03 16 19 C -0.18 -2.22 4.72 -26.59 -0.13 -2.34 16 20 C 0.07 0.79 6.69 37.21 0.25 1.04 16 21 O -0.39 -5.45 10.77 -35.23 -0.38 -5.83 16 22 C 0.07 1.00 6.69 37.21 0.25 1.25 16 23 C -0.14 -2.34 4.90 -26.59 -0.13 -2.47 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.16 2.89 8.06 -52.48 -0.42 2.47 16 26 H 0.21 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.37 4.91 9.04 45.56 0.41 5.32 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 32 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.99 7.82 -51.93 -0.41 0.59 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.11 2.19 5.65 -51.93 -0.29 1.89 16 LS Contribution 299.90 15.07 4.52 4.52 Total: -1.00 -34.24 299.90 -4.52 -38.76 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -3.15 Total: 7.52 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -0.25 Total: -4.81 kcal Atomic # 7 Polarization: -25.35 SS G_CDS: 0.76 Total: -24.59 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -1.38 Total: -37.72 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.24 -4.52 -38.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330352389.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.814 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds