Wall clock time and date at job start Tue Mar 31 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86806 * 120.00205 * 2 1 4 4 H 1.48508 * 109.46854 * 239.99741 * 3 2 1 5 5 H 1.48504 * 109.46802 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47425 * 119.99578 * 3 2 1 7 7 C 1.38793 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00124 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00206 * 0.02562 * 7 2 1 10 10 C 1.80997 * 100.00139 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47230 * 179.97438 * 10 9 7 12 12 O 1.21285 * 119.99794 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00365 * 179.97438 * 11 10 9 14 14 C 1.47422 * 125.64527 * 0.03003 * 13 11 10 15 15 C 1.54917 * 104.83074 * 204.09182 * 14 13 11 16 16 C 1.55158 * 101.57978 * 322.98980 * 15 14 13 17 17 C 1.47020 * 125.65281 * 179.97438 * 13 11 10 18 18 H 1.09000 * 109.88493 * 59.55540 * 17 13 11 19 19 C 1.50705 * 110.00933 * 298.46944 * 17 13 11 20 20 N 1.33240 * 125.53006 * 137.11325 * 19 17 13 21 21 C 1.30825 * 109.82830 * 179.97438 * 20 19 17 22 22 N 1.34428 * 108.08050 * 0.02562 * 21 20 19 23 23 H 0.96998 * 126.82245 * 180.02562 * 22 21 20 24 24 N 1.30717 * 125.52249 * 316.80266 * 19 17 13 25 25 H 0.97005 * 119.99836 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47100 * 59.99613 * 10 9 7 27 27 H 1.08993 * 109.47354 * 299.99784 * 10 9 7 28 28 H 1.08998 * 110.36873 * 85.25268 * 14 13 11 29 29 H 1.09005 * 110.36491 * 322.92676 * 14 13 11 30 30 H 1.08998 * 111.00524 * 81.06438 * 15 14 13 31 31 H 1.09006 * 111.00207 * 204.91491 * 15 14 13 32 32 H 1.09003 * 110.71801 * 153.86773 * 16 15 14 33 33 H 1.09003 * 110.71814 * 277.13679 * 16 15 14 34 34 H 1.08007 * 125.96000 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.1042 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0008 14 6 4.3150 -6.2448 0.0003 15 6 4.8016 -7.5824 -0.6113 16 6 3.7727 -8.5853 -0.0256 17 6 2.4665 -7.7640 0.0018 18 1 1.8684 -7.9894 -0.8811 19 6 1.6830 -8.0885 1.2476 20 7 0.5865 -8.8437 1.2980 21 6 0.1586 -8.9231 2.5317 22 7 0.9891 -8.2061 3.3083 23 1 0.9248 -8.0811 4.2681 24 7 1.9724 -7.6793 2.4549 25 1 -0.4850 0.8401 -0.0004 26 1 3.1244 -3.7313 0.8905 27 1 3.1244 -3.7314 -0.8894 28 1 4.6882 -6.1353 1.0186 29 1 4.6389 -5.4059 -0.6157 30 1 4.7467 -7.5572 -1.6996 31 1 5.8120 -7.8197 -0.2780 32 1 3.6685 -9.4543 -0.6752 33 1 4.0593 -8.8876 0.9817 34 1 -0.7108 -9.4689 2.8676 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333408672.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:38 Heat of formation + Delta-G solvation = 56.972580 kcal Electronic energy + Delta-G solvation = -19602.723725 eV Core-core repulsion = 16470.906465 eV Total energy + Delta-G solvation = -3131.817260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.11243 -39.67736 -37.12572 -32.86719 -32.40628 -31.76683 -31.40640 -29.29123 -28.27649 -25.46813 -23.96967 -22.77219 -21.64554 -20.75600 -18.86084 -18.37096 -17.62732 -16.68326 -16.23218 -15.41314 -15.10294 -14.79270 -14.74939 -14.36763 -13.94320 -13.59977 -13.40634 -12.88068 -12.52343 -12.28979 -12.10450 -11.84169 -11.71816 -11.37419 -11.02259 -11.01527 -10.98444 -10.74826 -10.10107 -10.04217 -9.80068 -9.71070 -9.28765 -9.03536 -8.54752 -8.19958 -6.47035 -6.18954 -3.89370 1.62541 2.65025 2.71746 3.07931 3.14267 3.25119 3.28243 3.31355 3.65484 4.05512 4.22639 4.36469 4.51403 4.73141 4.83209 4.97271 5.14211 5.15969 5.20903 5.39796 5.55128 5.62079 5.65788 5.71642 5.81417 5.97354 6.04603 6.18329 6.19407 6.38170 6.44361 7.00682 7.61529 7.71022 8.09862 8.37574 8.62603 9.25992 10.88496 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.004381 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.849133 B = 6389.520455 C = 7118.477916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.144 4.144 11 C 0.550 3.450 12 O -0.508 6.508 13 N -0.616 5.616 14 C 0.101 3.899 15 C -0.130 4.130 16 C -0.118 4.118 17 C 0.232 3.768 18 H 0.102 0.898 19 C 0.229 3.771 20 N -0.534 5.534 21 C 0.258 3.742 22 N -0.486 5.486 23 H 0.440 0.560 24 N -0.298 5.298 25 H 0.269 0.731 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.533 -19.381 3.785 21.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.295 4.295 11 C 0.339 3.661 12 O -0.381 6.381 13 N -0.354 5.354 14 C -0.022 4.022 15 C -0.169 4.169 16 C -0.157 4.157 17 C 0.124 3.876 18 H 0.120 0.880 19 C -0.055 4.055 20 N -0.262 5.262 21 C -0.041 4.041 22 N -0.204 5.204 23 H 0.285 0.715 24 N -0.128 5.128 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 6.969 -19.175 3.608 20.719 hybrid contribution 1.541 1.293 0.954 2.226 sum 8.510 -17.882 4.562 20.322 Atomic orbital electron populations 1.70016 1.05968 1.27514 1.46885 1.24984 0.95010 0.98982 0.94551 0.86229 0.79240 0.81251 0.78808 1.19895 1.20814 1.19957 1.22825 0.94873 0.91639 1.58949 0.90985 1.85403 1.05041 0.96282 1.96707 1.23494 1.06398 0.94793 1.04776 1.20053 0.85728 0.85398 0.74942 1.90727 1.14917 1.84968 1.47485 1.48541 1.06922 1.04196 1.75744 1.22328 0.79973 0.98629 1.01298 1.22802 0.98948 0.93920 1.01184 1.22663 0.92565 0.97916 1.02595 1.19657 0.94422 0.82244 0.91241 0.87985 1.24381 0.92917 0.94162 0.94009 1.70340 1.12676 1.23139 1.20033 1.26029 0.96798 0.94576 0.86689 1.48129 1.21373 1.39336 1.11546 0.71497 1.77981 1.11830 1.21310 1.01645 0.92163 0.89339 0.89217 0.91180 0.89944 0.90061 0.89536 0.89285 0.90345 0.76276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.65 13.22 55.49 0.73 -25.91 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.69 29.55 -169.99 -5.02 16.66 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.14 -3.12 5.16 36.01 0.19 -2.93 16 11 C 0.55 11.44 7.66 -10.99 -0.08 11.36 16 12 O -0.51 -12.63 15.70 5.55 0.09 -12.54 16 13 N -0.62 -9.78 3.04 -164.32 -0.50 -10.29 16 14 C 0.10 1.16 6.69 -2.53 -0.02 1.14 16 15 C -0.13 -1.07 7.09 -24.58 -0.17 -1.25 16 16 C -0.12 -1.13 6.47 -24.90 -0.16 -1.29 16 17 C 0.23 3.29 3.39 -68.11 -0.23 3.06 16 18 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 19 C 0.23 3.63 6.10 -156.85 -0.96 2.67 16 20 N -0.53 -8.08 11.19 -11.97 -0.13 -8.22 16 21 C 0.26 2.84 13.13 -90.66 -1.19 1.65 16 22 N -0.49 -5.57 7.45 29.53 0.22 -5.35 16 23 H 0.44 3.29 8.96 -182.34 -1.63 1.66 16 24 N -0.30 -4.67 12.77 32.42 0.41 -4.25 16 25 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.09 1.82 8.14 -51.91 -0.42 1.39 16 27 H 0.09 1.77 7.85 -51.92 -0.41 1.37 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.77 7.84 -51.93 -0.41 0.36 16 34 H 0.22 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 310.65 15.07 4.68 4.68 Total: -1.00 -39.43 310.65 -9.50 -48.93 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.34 Total: -0.99 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.43 Total: 1.20 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.73 Total: -54.02 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -39.43 -9.50 -48.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333408672.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.903 kcal (2) G-P(sol) polarization free energy of solvation -39.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds