Wall clock time and date at job start Tue Mar 31 2020 06:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31400 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48503 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47063 * 300.00535 * 3 2 1 6 6 H 1.48499 * 109.46812 * 60.00747 * 3 2 1 7 7 C 1.38999 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00148 * 116.84555 * 7 2 1 9 9 N 1.36887 * 120.00071 * 296.84970 * 7 2 1 10 10 C 1.34766 * 120.00101 * 205.60023 * 9 7 2 11 11 O 1.21758 * 120.00226 * 19.40989 * 10 9 7 12 12 C 1.46429 * 119.99813 * 199.41381 * 10 9 7 13 13 C 1.38062 * 126.23931 * 153.03450 * 12 10 9 14 14 C 1.39719 * 107.11826 * 179.84311 * 13 12 10 15 15 C 1.35696 * 107.89936 * 0.41780 * 14 13 12 16 16 Cl 1.73600 * 125.56993 * 179.77613 * 15 14 13 17 17 N 1.35632 * 108.85806 * 359.74132 * 15 14 13 18 18 H 0.97004 * 125.69508 * 179.97438 * 17 15 14 19 19 C 1.46507 * 119.99592 * 25.59887 * 9 7 2 20 20 C 1.54954 * 110.92445 * 119.98510 * 19 9 7 21 21 C 1.54267 * 104.16154 * 156.29285 * 20 19 9 22 22 C 1.53877 * 106.63869 * 336.44528 * 21 20 19 23 23 C 1.54266 * 106.59919 * 359.97438 * 22 21 20 24 24 H 0.97000 * 120.00163 * 359.97438 * 1 2 3 25 25 H 1.08000 * 126.44079 * 359.97438 * 13 12 10 26 26 H 1.08000 * 126.04548 * 180.19069 * 14 13 12 27 27 H 1.08997 * 110.67049 * 356.67204 * 19 9 7 28 28 H 1.09007 * 110.47512 * 37.64020 * 20 19 9 29 29 H 1.08996 * 110.53174 * 274.97145 * 20 19 9 30 30 H 1.09004 * 110.03128 * 217.13420 * 21 20 19 31 31 H 1.08992 * 110.03314 * 95.75797 * 21 20 19 32 32 H 1.09001 * 110.03200 * 119.26240 * 22 21 20 33 33 H 1.08998 * 110.03047 * 240.64475 * 22 21 20 34 34 H 1.08992 * 110.48842 * 142.28792 * 23 22 21 35 35 H 1.08998 * 110.48522 * 264.79926 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0090 -1.2038 -0.0005 8 1 2.6448 -1.4598 -0.8351 9 7 1.8876 -2.0647 1.0567 10 6 2.8790 -2.9340 1.3352 11 8 4.0003 -2.7374 0.9031 12 6 2.6079 -4.1149 2.1575 13 6 3.2919 -5.3134 2.1153 14 6 2.7065 -6.1547 3.0648 15 6 1.6897 -5.4756 3.6532 16 17 0.6495 -6.0939 4.8980 17 7 1.6193 -4.2346 3.1105 18 1 0.9799 -3.5464 3.3525 19 6 0.6797 -2.0410 1.8856 20 6 -0.0395 -3.4133 1.8549 21 6 -0.8581 -3.4397 3.1621 22 6 -0.1698 -2.4641 4.1328 23 6 1.0442 -1.8786 3.3822 24 1 -0.4850 0.8400 0.0004 25 1 4.1245 -5.5544 1.4710 26 1 3.0075 -7.1676 3.2880 27 1 0.0074 -1.2459 1.5633 28 1 0.6881 -4.2249 1.8439 29 1 -0.6995 -3.4796 0.9901 30 1 -0.8590 -4.4457 3.5819 31 1 -1.8805 -3.1151 2.9691 32 1 -0.8579 -1.6655 4.4102 33 1 0.1626 -2.9964 5.0240 34 1 1.1749 -0.8255 3.6309 35 1 1.9472 -2.4408 3.6202 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346476759.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:42 Heat of formation + Delta-G solvation = 126.413921 kcal Electronic energy + Delta-G solvation = -21469.742606 eV Core-core repulsion = 18306.600091 eV Total energy + Delta-G solvation = -3163.142515 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.61680 -38.44055 -37.40120 -36.44697 -34.36746 -32.13590 -30.45046 -28.70562 -28.65930 -27.29889 -25.04392 -21.92083 -21.42784 -20.23589 -19.85257 -19.27708 -17.77078 -17.16514 -15.81400 -15.40872 -15.04347 -14.86636 -14.39961 -14.01890 -13.60752 -13.14134 -12.63023 -12.52502 -12.41725 -12.39253 -12.11448 -11.74447 -11.68908 -11.29714 -11.20544 -11.11332 -10.96047 -10.88685 -10.56332 -10.35470 -10.22101 -9.94909 -8.71266 -8.59427 -8.25283 -8.12205 -7.62142 -7.14018 -3.75275 1.95623 2.05224 2.94150 3.05548 3.23500 3.39140 3.80473 3.85148 4.10612 4.47319 4.51574 4.74010 4.88511 5.11942 5.38354 5.50500 5.52970 5.63810 5.72251 5.78507 5.83963 5.89794 5.96374 6.13036 6.22280 6.38035 6.39174 6.50607 6.67522 6.85329 7.04341 7.16716 7.24541 7.72007 8.09853 8.30876 9.00460 9.17925 9.85030 9.94511 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.007064 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.988378 B = 3962.530337 C = 4683.066867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.110 3.890 3 Si 0.838 3.162 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.382 4.382 8 H 0.110 0.890 9 N -0.415 5.415 10 C 0.498 3.502 11 O -0.565 6.565 12 C 0.005 3.995 13 C -0.142 4.142 14 C -0.178 4.178 15 C 0.038 3.962 16 Cl -0.039 7.039 17 N -0.534 5.534 18 H 0.450 0.550 19 C 0.103 3.897 20 C -0.211 4.211 21 C -0.146 4.146 22 C -0.148 4.148 23 C -0.190 4.190 24 H 0.279 0.721 25 H 0.148 0.852 26 H 0.142 0.858 27 H 0.144 0.856 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.418 -6.549 8.693 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.107 4.107 3 Si 0.659 3.341 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.505 4.505 8 H 0.128 0.872 9 N -0.131 5.131 10 C 0.288 3.712 11 O -0.449 6.449 12 C -0.109 4.109 13 C -0.168 4.168 14 C -0.205 4.205 15 C -0.104 4.104 16 Cl -0.011 7.011 17 N -0.159 5.159 18 H 0.317 0.683 19 C -0.002 4.002 20 C -0.250 4.250 21 C -0.185 4.185 22 C -0.186 4.186 23 C -0.228 4.228 24 H 0.089 0.911 25 H 0.166 0.834 26 H 0.160 0.840 27 H 0.161 0.839 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.358 -6.190 8.605 11.461 hybrid contribution -0.390 1.093 0.401 1.228 sum -4.748 -5.096 9.006 11.385 Atomic orbital electron populations 1.70518 1.08517 1.29876 1.30454 1.25333 0.93512 0.99863 0.92010 0.87371 0.84808 0.83616 0.78273 1.17932 1.20550 1.20072 1.18920 1.33070 0.97241 1.01220 0.87220 1.43427 1.12095 1.31613 1.25969 1.16394 0.85351 0.83777 0.85639 1.90685 1.20956 1.75384 1.57916 1.21179 0.93453 0.98984 0.97323 1.21109 1.02093 0.91771 1.01807 1.20507 0.98098 1.00757 1.01118 1.20982 1.00210 0.89726 0.99497 1.98332 1.66544 1.85237 1.50980 1.46129 1.27831 1.13242 1.28694 0.68306 1.23141 0.89679 0.99162 0.88236 1.24375 1.01432 1.01699 0.97447 1.22435 1.00878 0.99395 0.95760 1.22340 0.97959 1.00001 0.98337 1.23548 0.98047 1.03321 0.97899 0.91050 0.83422 0.83991 0.83915 0.86277 0.90609 0.91136 0.90399 0.89736 0.91243 0.89857 0.89782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.20 11.54 55.50 0.64 -17.56 16 2 C 0.11 2.72 4.73 -17.45 -0.08 2.64 16 3 Si 0.84 18.70 29.69 -169.99 -5.05 13.66 16 4 H -0.26 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.38 -10.27 8.91 -15.01 -0.13 -10.40 16 8 H 0.11 3.15 7.92 -52.49 -0.42 2.73 16 9 N -0.41 -10.32 2.69 -107.13 -0.29 -10.61 16 10 C 0.50 12.51 6.72 -12.97 -0.09 12.42 16 11 O -0.57 -16.01 16.97 5.14 0.09 -15.92 16 12 C 0.01 0.11 4.79 -81.93 -0.39 -0.28 16 13 C -0.14 -2.67 10.75 -39.09 -0.42 -3.09 16 14 C -0.18 -2.87 10.78 -39.94 -0.43 -3.30 16 15 C 0.04 0.61 7.31 -16.78 -0.12 0.49 16 16 Cl -0.04 -0.51 27.85 -51.86 -1.44 -1.96 16 17 N -0.53 -9.61 1.93 -6.53 -0.01 -9.63 16 18 H 0.45 7.68 0.37 -76.90 -0.03 7.65 16 19 C 0.10 2.18 3.07 -65.90 -0.20 1.97 16 20 C -0.21 -3.96 5.70 -25.04 -0.14 -4.10 16 21 C -0.15 -2.18 5.94 -25.61 -0.15 -2.34 16 22 C -0.15 -2.14 5.97 -25.61 -0.15 -2.29 16 23 C -0.19 -3.44 5.65 -25.07 -0.14 -3.59 16 24 H 0.28 6.02 8.31 -40.82 -0.34 5.68 16 25 H 0.15 2.62 8.06 -52.49 -0.42 2.20 16 26 H 0.14 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.14 3.23 5.02 -51.93 -0.26 2.97 16 28 H 0.12 2.35 3.40 -98.42 -0.33 2.02 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.07 0.98 6.15 -51.93 -0.32 0.66 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 34 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.08 1.62 4.85 -51.93 -0.25 1.37 16 LS Contribution 285.12 15.07 4.30 4.30 Total: -1.00 -28.06 285.12 -7.93 -36.00 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -3.70 Total: 13.59 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.46 Total: -11.86 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.34 Total: -37.80 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: 0.09 Total: -15.92 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.05 Total: 13.66 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.44 Total: -1.96 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.06 -7.93 -36.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346476759.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.410 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds