Wall clock time and date at job start Tue Mar 31 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00008 * 2 1 4 4 C 1.50691 * 109.47491 * 89.99636 * 3 2 1 5 5 C 1.38085 * 119.58646 * 95.02443 * 4 3 2 6 6 C 1.38784 * 119.29420 * 179.97438 * 5 4 3 7 7 C 1.38424 * 118.48103 * 359.74525 * 6 5 4 8 8 C 1.38879 * 119.11183 * 0.49490 * 7 6 5 9 9 O 1.35677 * 119.68343 * 179.77049 * 8 7 6 10 10 N 1.31942 * 119.58389 * 275.00011 * 4 3 2 11 11 C 1.34772 * 120.00220 * 179.97438 * 2 1 3 12 12 O 1.21282 * 120.00424 * 180.02562 * 11 2 1 13 13 C 1.50709 * 120.00046 * 0.02562 * 11 2 1 14 14 S 1.80996 * 109.47058 * 180.02562 * 13 11 2 15 15 C 1.76205 * 99.99701 * 180.02562 * 14 13 11 16 16 H 1.07993 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99773 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99926 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47066 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47068 * 120.00323 * 19 17 15 22 22 H 1.48502 * 109.47486 * 240.00398 * 19 17 15 23 23 H 1.09005 * 109.47325 * 90.00454 * 1 2 3 24 24 H 1.08998 * 109.47442 * 210.00380 * 1 2 3 25 25 H 1.08998 * 109.47347 * 330.00488 * 1 2 3 26 26 H 1.09000 * 109.47043 * 329.99205 * 3 2 1 27 27 H 1.09001 * 109.46832 * 209.99738 * 3 2 1 28 28 H 1.08008 * 120.35502 * 359.95265 * 5 4 3 29 29 H 1.07999 * 120.76320 * 180.02562 * 6 5 4 30 30 H 1.07998 * 120.44483 * 180.24926 * 7 6 5 31 31 H 0.96700 * 114.00259 * 269.72871 * 9 8 7 32 32 H 1.09004 * 109.46792 * 300.00345 * 13 11 2 33 33 H 1.09000 * 109.46784 * 59.99820 * 13 11 2 34 34 H 0.96999 * 120.00259 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 1.4207 5 6 3.6477 1.3885 2.0285 6 6 3.8728 1.7927 3.3369 7 6 2.8812 2.5071 3.9870 8 6 1.6976 2.7844 3.3155 9 8 0.7160 3.4797 3.9432 10 7 1.5201 2.3818 2.0681 11 6 2.1388 -1.1671 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3854 -2.4724 0.0005 14 16 2.5616 -3.8480 0.0020 15 6 1.4415 -5.2082 0.0010 16 1 0.3763 -5.0305 0.0002 17 6 1.9283 -6.5080 0.0012 18 7 3.2266 -6.7246 0.0027 19 14 0.7409 -7.9500 0.0008 20 1 -0.6546 -7.4422 -0.0003 21 1 0.9671 -8.7773 -1.2115 22 1 0.9661 -8.7771 1.2135 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.6084 2.0283 -0.5140 27 1 3.1499 1.1383 -0.5138 28 1 4.4023 0.8328 1.4915 29 1 4.8021 1.5593 3.8351 30 1 3.0244 2.8408 5.0041 31 1 0.0832 2.9245 4.4189 32 1 0.7583 -2.5298 0.8903 33 1 0.7590 -2.5302 -0.8897 34 1 3.5668 -7.6330 0.0032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351832913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:11 Heat of formation + Delta-G solvation = -34.157316 kcal Electronic energy + Delta-G solvation = -19129.915172 eV Core-core repulsion = 15961.853471 eV Total energy + Delta-G solvation = -3168.061700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70808 -39.32655 -37.31892 -35.33601 -32.75964 -32.44647 -31.46172 -29.29972 -27.32565 -25.80494 -25.36706 -23.42632 -22.46071 -19.38822 -18.75405 -17.69629 -16.95177 -16.48758 -16.38074 -15.92143 -15.80063 -15.28806 -14.82061 -14.10534 -13.93276 -13.47605 -13.29614 -12.94024 -12.87263 -12.59802 -12.38007 -12.31424 -11.99454 -11.86343 -11.71943 -11.08527 -11.03435 -10.77026 -10.06761 -9.81450 -9.69728 -9.48536 -9.09007 -8.95929 -8.58113 -8.24752 -6.51985 -6.23625 -3.94096 0.81237 1.05433 2.87444 2.98980 3.20230 3.22576 3.28947 3.35758 3.56905 3.76073 4.18626 4.38862 4.59086 4.86532 4.89600 4.98590 5.11768 5.21201 5.26633 5.30140 5.45219 5.51349 5.58998 5.67186 5.77171 5.89889 5.93983 6.05648 6.12430 6.34859 6.54840 7.26068 7.47864 7.58433 7.77198 8.33763 8.49660 9.22056 10.83864 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.003632 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.789610 B = 7707.618535 C = 7783.534543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.617 5.617 3 C 0.167 3.833 4 C 0.133 3.867 5 C -0.153 4.153 6 C -0.062 4.062 7 C -0.186 4.186 8 C 0.302 3.698 9 O -0.485 6.485 10 N -0.494 5.494 11 C 0.534 3.466 12 O -0.514 6.514 13 C -0.149 4.149 14 S -0.061 6.061 15 C -0.534 4.534 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.280 1.280 23 H 0.056 0.944 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.148 0.852 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.399 0.601 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.291 17.971 5.310 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.353 5.353 3 C 0.043 3.957 4 C -0.006 4.006 5 C -0.173 4.173 6 C -0.087 4.087 7 C -0.207 4.207 8 C 0.123 3.877 9 O -0.292 6.292 10 N -0.213 5.213 11 C 0.322 3.678 12 O -0.388 6.388 13 C -0.300 4.300 14 S 0.165 5.835 15 C -0.683 4.683 16 H 0.091 0.909 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.196 1.196 21 H -0.205 1.205 22 H -0.206 1.206 23 H 0.075 0.925 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.166 0.834 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.256 0.744 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.882 18.542 4.697 19.344 hybrid contribution -1.817 -1.451 0.815 2.464 sum -4.699 17.092 5.512 18.563 Atomic orbital electron populations 1.21812 0.79177 1.03471 1.01848 1.47835 1.07110 1.04847 1.75463 1.20243 0.99456 0.85840 0.90117 1.21452 0.89217 0.92695 0.97213 1.22221 0.98909 1.00297 0.95920 1.21574 0.98858 0.94113 0.94200 1.22098 0.95213 1.01561 1.01840 1.19105 0.88607 0.91779 0.88209 1.84769 1.41301 1.34577 1.68515 1.66911 1.33970 1.11154 1.09314 1.20409 0.87986 0.84555 0.74874 1.90668 1.13627 1.86779 1.47770 1.23554 1.04559 0.97100 1.04761 1.85354 1.08076 0.93342 1.96706 1.22900 0.94345 0.92191 1.58836 0.90898 1.24985 0.95666 0.98371 0.94518 1.70023 1.11732 1.21566 1.46968 0.86124 0.80373 0.81128 0.77917 1.19606 1.20538 1.20571 0.92504 0.90886 0.90705 0.88850 0.87820 0.83443 0.84118 0.84360 0.74390 0.89364 0.89139 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.24 59.84 0.61 1.52 16 2 N -0.62 -8.81 2.86 -182.96 -0.52 -9.33 16 3 C 0.17 2.10 5.71 -5.20 -0.03 2.07 16 4 C 0.13 1.75 6.36 -82.61 -0.53 1.23 16 5 C -0.15 -1.94 9.71 -39.44 -0.38 -2.33 16 6 C -0.06 -0.66 10.17 -39.31 -0.40 -1.06 16 7 C -0.19 -1.92 10.04 -39.28 -0.39 -2.31 16 8 C 0.30 3.59 7.74 -17.12 -0.13 3.45 16 9 O -0.48 -4.85 13.56 -18.73 -0.25 -5.11 16 10 N -0.49 -6.55 10.30 -9.55 -0.10 -6.64 16 11 C 0.53 9.90 7.69 -10.98 -0.08 9.81 16 12 O -0.51 -11.02 15.38 5.56 0.09 -10.93 16 13 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 14 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 15 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 16 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 17 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 18 N -0.87 -25.93 13.22 55.49 0.73 -25.19 16 19 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 20 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 25 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 26 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 27 H 0.10 1.31 7.32 -51.93 -0.38 0.93 16 28 H 0.15 1.93 8.00 -52.48 -0.42 1.51 16 29 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 30 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.40 2.10 9.06 45.56 0.41 2.52 16 32 H 0.09 1.68 7.40 -51.91 -0.38 1.29 16 33 H 0.09 1.70 8.11 -51.92 -0.42 1.28 16 34 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 316.99 15.07 4.78 4.78 Total: -1.00 -35.23 316.99 -6.66 -41.89 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -3.18 Total: 1.46 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.97 Total: -3.27 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.11 Total: -41.17 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.17 Total: -16.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.23 -6.66 -41.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351832913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.729 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds