Wall clock time and date at job start Tue Mar 31 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00008 * 2 1 4 4 C 1.50691 * 109.47491 * 89.99636 * 3 2 1 5 5 C 1.38085 * 119.58646 * 95.02443 * 4 3 2 6 6 C 1.38784 * 119.29420 * 179.97438 * 5 4 3 7 7 C 1.38424 * 118.48103 * 359.74525 * 6 5 4 8 8 C 1.38879 * 119.11183 * 0.49490 * 7 6 5 9 9 O 1.35677 * 119.68343 * 179.77049 * 8 7 6 10 10 N 1.31942 * 119.58389 * 275.00011 * 4 3 2 11 11 C 1.34772 * 120.00220 * 179.97438 * 2 1 3 12 12 O 1.21282 * 120.00424 * 180.02562 * 11 2 1 13 13 C 1.50709 * 120.00046 * 0.02562 * 11 2 1 14 14 S 1.80996 * 109.47058 * 180.02562 * 13 11 2 15 15 C 1.76205 * 99.99701 * 180.02562 * 14 13 11 16 16 H 1.07993 * 119.99939 * 359.97438 * 15 14 13 17 17 C 1.38798 * 119.99773 * 179.97438 * 15 14 13 18 18 N 1.31627 * 120.00351 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99926 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47066 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47068 * 120.00323 * 19 17 15 22 22 H 1.48502 * 109.47486 * 240.00398 * 19 17 15 23 23 H 1.09005 * 109.47325 * 90.00454 * 1 2 3 24 24 H 1.08998 * 109.47442 * 210.00380 * 1 2 3 25 25 H 1.08998 * 109.47347 * 330.00488 * 1 2 3 26 26 H 1.09000 * 109.47043 * 329.99205 * 3 2 1 27 27 H 1.09001 * 109.46832 * 209.99738 * 3 2 1 28 28 H 1.08008 * 120.35502 * 359.95265 * 5 4 3 29 29 H 1.07999 * 120.76320 * 180.02562 * 6 5 4 30 30 H 1.07998 * 120.44483 * 180.24926 * 7 6 5 31 31 H 0.96700 * 114.00259 * 269.72871 * 9 8 7 32 32 H 1.09004 * 109.46792 * 300.00345 * 13 11 2 33 33 H 1.09000 * 109.46784 * 59.99820 * 13 11 2 34 34 H 0.96999 * 120.00259 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7039 1.4207 5 6 3.6477 1.3885 2.0285 6 6 3.8728 1.7927 3.3369 7 6 2.8812 2.5071 3.9870 8 6 1.6976 2.7844 3.3155 9 8 0.7160 3.4797 3.9432 10 7 1.5201 2.3818 2.0681 11 6 2.1388 -1.1671 0.0005 12 8 3.3517 -1.1672 0.0010 13 6 1.3854 -2.4724 0.0005 14 16 2.5616 -3.8480 0.0020 15 6 1.4415 -5.2082 0.0010 16 1 0.3763 -5.0305 0.0002 17 6 1.9283 -6.5080 0.0012 18 7 3.2266 -6.7246 0.0027 19 14 0.7409 -7.9500 0.0008 20 1 -0.6546 -7.4422 -0.0003 21 1 0.9671 -8.7773 -1.2115 22 1 0.9661 -8.7771 1.2135 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3634 0.8900 0.5137 26 1 1.6084 2.0283 -0.5140 27 1 3.1499 1.1383 -0.5138 28 1 4.4023 0.8328 1.4915 29 1 4.8021 1.5593 3.8351 30 1 3.0244 2.8408 5.0041 31 1 0.0832 2.9245 4.4189 32 1 0.7583 -2.5298 0.8903 33 1 0.7590 -2.5302 -0.8897 34 1 3.5668 -7.6330 0.0032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351832913.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:11 Heat of formation + Delta-G solvation = -61.563117 kcal Electronic energy + Delta-G solvation = -19131.103576 eV Core-core repulsion = 15961.853471 eV Total energy + Delta-G solvation = -3169.250105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.64983 -40.61238 -38.17250 -36.56969 -34.58334 -33.67873 -32.50280 -30.65737 -28.35972 -27.69138 -26.74018 -24.29645 -23.43522 -20.77182 -19.62464 -19.53254 -18.19782 -17.53215 -17.33112 -17.15120 -16.88353 -16.86516 -16.36956 -15.86126 -15.03214 -14.64051 -14.58617 -14.37847 -13.92584 -13.79749 -13.50631 -13.32069 -13.19075 -13.15381 -12.91666 -12.84522 -12.65995 -12.53267 -11.70304 -11.15525 -11.02935 -10.86954 -10.60706 -10.26612 -9.91572 -9.71344 -8.66179 -8.34716 -6.12355 -0.08054 0.17704 1.26601 1.41444 1.46429 1.54839 1.57769 2.07570 2.27341 2.53196 2.79207 2.99686 3.26573 3.51242 3.66714 3.84030 4.04921 4.11855 4.19293 4.31585 4.37315 4.44386 4.48486 4.60325 4.65925 4.74435 4.92120 5.06779 5.18659 5.42384 5.43547 5.53050 6.19802 6.22805 6.60014 6.88020 7.06987 7.10429 8.74673 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.026896 B = 0.003632 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.789610 B = 7707.618535 C = 7783.534543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.604 5.604 3 C 0.167 3.833 4 C 0.120 3.880 5 C -0.173 4.173 6 C -0.061 4.061 7 C -0.180 4.180 8 C 0.294 3.706 9 O -0.490 6.490 10 N -0.509 5.509 11 C 0.533 3.467 12 O -0.552 6.552 13 C -0.124 4.124 14 S -0.145 6.145 15 C -0.546 4.546 16 H 0.081 0.919 17 C 0.015 3.985 18 N -0.910 5.910 19 Si 0.997 3.003 20 H -0.257 1.257 21 H -0.274 1.274 22 H -0.274 1.274 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.118 0.882 27 H 0.096 0.904 28 H 0.134 0.866 29 H 0.165 0.835 30 H 0.167 0.833 31 H 0.419 0.581 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.397 18.752 6.101 20.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.338 5.338 3 C 0.044 3.956 4 C -0.018 4.018 5 C -0.194 4.194 6 C -0.087 4.087 7 C -0.201 4.201 8 C 0.115 3.885 9 O -0.300 6.300 10 N -0.230 5.230 11 C 0.320 3.680 12 O -0.430 6.430 13 C -0.275 4.275 14 S 0.082 5.918 15 C -0.694 4.694 16 H 0.099 0.901 17 C -0.189 4.189 18 N -0.547 5.547 19 Si 0.819 3.181 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.136 0.864 27 H 0.114 0.886 28 H 0.152 0.848 29 H 0.183 0.817 30 H 0.185 0.815 31 H 0.279 0.721 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.037 19.361 5.497 20.747 hybrid contribution -1.211 -1.515 0.631 2.039 sum -6.248 17.847 6.128 19.877 Atomic orbital electron populations 1.22044 0.77008 1.04165 1.03466 1.47787 1.08397 1.04111 1.73490 1.20372 0.99484 0.85235 0.90516 1.21411 0.89587 0.93469 0.97365 1.22268 0.98889 1.01110 0.97097 1.21891 0.99963 0.93394 0.93421 1.22391 0.94223 1.00549 1.02934 1.19390 0.89546 0.91492 0.88100 1.84728 1.41561 1.35122 1.68548 1.66886 1.34126 1.11763 1.10188 1.20134 0.87436 0.85204 0.75194 1.90658 1.15081 1.87304 1.49932 1.23375 1.02825 0.95156 1.06168 1.85496 1.12332 0.96982 1.97004 1.23228 0.94638 0.92743 1.58817 0.90076 1.26089 0.97549 1.01591 0.93718 1.70178 1.14038 1.22429 1.48045 0.84929 0.78219 0.76848 0.78103 1.18100 1.19901 1.19925 0.90374 0.90936 0.89283 0.86422 0.88567 0.84763 0.81723 0.81519 0.72071 0.87982 0.87448 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.51 10.24 127.77 1.31 2.82 16 2 N -0.60 -16.53 2.86 -851.16 -2.43 -18.96 16 3 C 0.17 4.06 5.71 85.63 0.49 4.55 16 4 C 0.12 3.08 6.36 42.50 0.27 3.35 16 5 C -0.17 -4.39 9.71 22.36 0.22 -4.17 16 6 C -0.06 -1.23 10.17 22.45 0.23 -1.00 16 7 C -0.18 -3.31 10.04 22.47 0.23 -3.08 16 8 C 0.29 6.40 7.74 84.78 0.66 7.06 16 9 O -0.49 -8.63 13.56 -89.95 -1.22 -9.85 16 10 N -0.51 -12.73 10.30 -296.99 -3.06 -15.79 16 11 C 0.53 19.71 7.69 87.66 0.67 20.39 16 12 O -0.55 -24.36 15.38 -3.04 -0.05 -24.41 16 13 C -0.12 -4.96 4.71 71.24 0.34 -4.62 16 14 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 15 C -0.55 -31.01 9.50 67.95 0.65 -30.36 16 16 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 17 C 0.02 0.87 5.49 84.86 0.47 1.33 16 18 N -0.91 -55.41 13.22 21.65 0.29 -55.13 16 19 Si 1.00 43.24 29.55 68.60 2.03 45.27 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.07 1.48 6.44 -2.39 -0.02 1.47 16 25 H 0.09 1.59 8.07 -2.39 -0.02 1.57 16 26 H 0.12 2.25 8.07 -2.39 -0.02 2.23 16 27 H 0.10 2.48 7.32 -2.39 -0.02 2.46 16 28 H 0.13 3.70 8.00 -2.91 -0.02 3.68 16 29 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 30 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 31 H 0.42 3.36 9.06 -74.06 -0.67 2.69 16 32 H 0.10 3.77 7.40 -2.39 -0.02 3.76 16 33 H 0.11 3.90 8.11 -2.39 -0.02 3.88 16 34 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -77.34 316.99 0.37 -76.97 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.46 Total: 14.79 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.52 Total: -3.74 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -5.20 Total: -89.88 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.27 Total: -34.26 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -77.34 0.37 -76.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351832913.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.408 kcal (2) G-P(sol) polarization free energy of solvation -77.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds