Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21264 * 119.99957 * 2 1 4 4 C 1.46964 * 119.99846 * 180.02562 * 2 1 3 5 5 N 1.30482 * 124.74439 * 359.96738 * 4 2 1 6 6 C 1.30184 * 117.39661 * 180.02562 * 5 4 2 7 7 C 1.37345 * 114.01115 * 0.02562 * 6 5 4 8 8 C 1.47248 * 126.14819 * 180.02562 * 7 6 5 9 9 O 1.21616 * 120.00381 * 352.10916 * 8 7 6 10 10 N 1.34782 * 119.99658 * 172.11502 * 8 7 6 11 11 C 1.46494 * 120.00087 * 1.38754 * 10 8 7 12 12 C 1.46499 * 119.99876 * 181.38893 * 10 8 7 13 13 H 1.09005 * 109.46982 * 0.02562 * 12 10 8 14 14 C 1.52996 * 109.47120 * 120.00018 * 12 10 8 15 15 C 1.50703 * 109.47103 * 239.99985 * 12 10 8 16 16 H 1.08000 * 120.00053 * 0.02562 * 15 12 10 17 17 C 1.37876 * 119.99879 * 180.02562 * 15 12 10 18 18 N 1.31519 * 120.00084 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00010 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46947 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47193 * 119.99649 * 19 17 15 22 22 H 1.48491 * 109.47215 * 239.99834 * 19 17 15 23 23 S 1.70925 * 124.73975 * 180.31568 * 4 2 1 24 24 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46712 * 299.99922 * 1 2 3 26 26 H 1.08997 * 109.47204 * 60.00190 * 1 2 3 27 27 H 1.08008 * 122.99344 * 180.02562 * 6 5 4 28 28 H 1.09006 * 109.47161 * 83.65773 * 11 10 8 29 29 H 1.09002 * 109.47209 * 323.66221 * 11 10 8 30 30 H 1.09001 * 109.47547 * 203.65385 * 11 10 8 31 31 H 1.08998 * 109.47565 * 180.02562 * 14 12 10 32 32 H 1.09009 * 109.47189 * 299.99736 * 14 12 10 33 33 H 1.08995 * 109.47489 * 59.99830 * 14 12 10 34 34 H 0.97002 * 119.99763 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0502 0.0000 4 6 2.2418 -1.2728 -0.0006 5 7 1.6851 -2.4528 -0.0005 6 6 2.4748 -3.4878 -0.0005 7 6 3.8112 -3.1710 -0.0001 8 6 4.9306 -4.1276 -0.0006 9 8 4.7152 -5.3159 0.1432 10 7 6.1941 -3.6863 -0.1602 11 6 6.4565 -2.2521 -0.3028 12 6 7.3050 -4.6408 -0.1911 13 1 6.9179 -5.6528 -0.0713 14 6 8.0354 -4.5301 -1.5310 15 6 8.2634 -4.3329 0.9304 16 1 8.0646 -3.5088 1.5996 17 6 9.3939 -5.1031 1.1021 18 7 9.6357 -6.1070 0.2875 19 14 10.5822 -4.7210 2.4918 20 1 10.0853 -3.5515 3.2604 21 1 10.6852 -5.8971 3.3926 22 1 11.9203 -4.4109 1.9277 23 16 3.9452 -1.4141 0.0071 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.1114 -4.5049 -0.0009 28 1 6.5096 -1.7926 0.6843 29 1 5.6520 -1.7907 -0.8755 30 1 7.4031 -2.1058 -0.8230 31 1 8.8616 -5.2406 -1.5542 32 1 7.3422 -4.7529 -2.3422 33 1 8.4223 -3.5183 -1.6513 34 1 10.4313 -6.6486 0.4082 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355144124.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -14.851145 kcal Electronic energy + Delta-G solvation = -19537.578045 eV Core-core repulsion = 16370.353523 eV Total energy + Delta-G solvation = -3167.224522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18887 -39.44598 -38.59345 -35.58771 -33.12496 -31.61004 -30.17763 -28.93326 -26.96469 -26.23768 -25.31785 -22.84324 -21.66379 -19.92110 -18.57207 -18.09510 -16.79065 -16.52721 -16.03708 -15.73711 -15.28131 -15.08991 -14.89809 -14.53662 -14.00425 -13.76292 -13.26491 -12.83789 -12.76858 -12.52836 -12.40422 -12.15292 -11.71662 -11.45943 -11.15582 -10.95330 -10.83211 -10.68186 -10.36847 -10.28813 -9.70571 -9.46450 -9.44132 -9.25984 -9.11552 -8.54412 -7.86203 -6.18051 -4.26985 -0.24998 1.05911 1.54263 1.65225 2.74489 3.20485 3.28831 3.31138 3.48062 3.51752 3.65139 4.31156 4.42672 4.78881 4.86551 5.13969 5.16435 5.17672 5.25631 5.29228 5.68615 5.68948 5.99005 6.02077 6.60831 6.65812 6.87803 6.94367 7.16698 7.29771 7.48770 7.58142 7.86054 8.01515 8.24137 8.59221 8.79241 9.40053 10.87394 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.031146 B = 0.004264 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.764548 B = 6565.477211 C = 6928.073643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.440 3.560 3 O -0.450 6.450 4 C -0.111 4.111 5 N -0.430 5.430 6 C 0.096 3.904 7 C -0.261 4.261 8 C 0.575 3.425 9 O -0.528 6.528 10 N -0.579 5.579 11 C 0.074 3.926 12 C 0.259 3.741 13 H 0.069 0.931 14 C -0.149 4.149 15 C -0.530 4.530 16 H 0.061 0.939 17 C 0.067 3.933 18 N -0.886 5.886 19 Si 0.901 3.099 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.282 1.282 23 S 0.303 5.697 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.194 0.806 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.014 0.986 33 H 0.032 0.968 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 10.817 -2.348 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.314 3.686 3 O -0.322 6.322 4 C -0.379 4.379 5 N -0.149 5.149 6 C -0.066 4.066 7 C -0.387 4.387 8 C 0.359 3.641 9 O -0.407 6.407 10 N -0.310 5.310 11 C -0.072 4.072 12 C 0.159 3.841 13 H 0.086 0.914 14 C -0.208 4.208 15 C -0.569 4.569 16 H 0.079 0.921 17 C -0.136 4.136 18 N -0.524 5.524 19 Si 0.728 3.272 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 S 0.562 5.438 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.210 0.790 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.119 0.881 31 H 0.116 0.884 32 H 0.033 0.967 33 H 0.051 0.949 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.082 11.440 -2.295 16.796 hybrid contribution 0.309 -0.764 0.723 1.097 sum -11.773 10.675 -1.572 15.970 Atomic orbital electron populations 1.22073 0.91582 1.06127 1.04658 1.21707 0.92089 0.84570 0.70235 1.90599 1.72217 1.32795 1.36600 1.28127 1.00502 0.98028 1.11248 1.66239 1.39237 0.97133 1.12292 1.22426 0.86742 0.99168 0.98265 1.27344 1.00361 0.97334 1.13659 1.16897 0.81650 0.86767 0.78741 1.90799 1.83644 1.15346 1.50890 1.48247 1.06727 1.07882 1.68126 1.21854 1.01700 0.82018 1.01668 1.19116 0.81702 0.89006 0.94233 0.91350 1.22132 1.01489 1.01360 0.95774 1.21314 1.06356 1.15875 1.13325 0.92053 1.24886 0.97690 0.94664 0.96390 1.69880 1.27320 1.18159 1.36997 0.86403 0.80558 0.78408 0.81830 1.19745 1.20809 1.20828 1.84697 1.00818 0.99287 1.58993 0.88517 0.88529 0.88515 0.78971 0.91847 0.93170 0.88127 0.88394 0.96710 0.94907 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.45 10.31 36.01 0.37 -1.08 16 2 C 0.44 5.05 7.25 -30.77 -0.22 4.83 16 3 O -0.45 -6.10 17.60 5.57 0.10 -6.01 16 4 C -0.11 -1.45 7.16 -14.59 -0.10 -1.55 16 5 N -0.43 -5.83 9.73 -12.21 -0.12 -5.95 16 6 C 0.10 1.39 11.19 -18.57 -0.21 1.19 16 7 C -0.26 -4.21 6.33 -36.25 -0.23 -4.44 16 8 C 0.58 11.69 7.66 -12.60 -0.10 11.60 16 9 O -0.53 -12.52 16.22 5.26 0.09 -12.44 16 10 N -0.58 -11.88 2.75 -176.60 -0.49 -12.37 16 11 C 0.07 1.18 8.19 59.84 0.49 1.67 16 12 C 0.26 6.30 2.63 -69.08 -0.18 6.12 16 13 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 14 C -0.15 -3.37 8.96 37.16 0.33 -3.04 16 15 C -0.53 -13.74 8.37 -34.44 -0.29 -14.03 16 16 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -24.16 11.32 55.43 0.63 -23.53 16 19 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 20 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 S 0.30 4.02 17.87 -107.50 -1.92 2.10 16 24 H 0.10 0.76 7.37 -51.93 -0.38 0.38 16 25 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.19 2.56 8.06 -52.48 -0.42 2.14 16 28 H 0.06 0.96 7.89 -51.93 -0.41 0.55 16 29 H 0.05 0.69 4.48 -22.93 -0.10 0.59 16 30 H 0.10 1.58 6.45 -51.93 -0.33 1.24 16 31 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 32 H 0.01 0.30 8.14 -51.92 -0.42 -0.13 16 33 H 0.03 0.67 6.67 -51.93 -0.35 0.32 16 34 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -30.25 303.96 -5.86 -36.12 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -3.48 Total: -0.81 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -0.23 Total: 2.92 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 0.02 Total: -41.85 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: 0.18 Total: -18.44 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.92 Total: 2.10 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.25 -5.86 -36.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355144124.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.266 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds