Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99905 * 2 1 4 4 H 1.48501 * 109.47106 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46987 * 299.99895 * 3 2 1 6 6 H 1.48500 * 109.47220 * 59.99824 * 3 2 1 7 7 C 1.37873 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99886 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00543 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47479 * 180.02562 * 9 7 2 11 11 C 1.46500 * 119.99680 * 262.45694 * 10 9 7 12 12 C 1.53007 * 109.46976 * 274.87108 * 11 10 9 13 13 C 1.53000 * 117.49869 * 246.25356 * 12 11 10 14 14 C 1.53002 * 117.49811 * 177.59093 * 12 11 10 15 15 C 1.34777 * 120.00445 * 82.45543 * 10 9 7 16 16 O 1.21711 * 120.00411 * 181.29576 * 15 10 9 17 17 C 1.46552 * 119.99606 * 1.28988 * 15 10 9 18 18 C 1.37933 * 126.23039 * 169.88909 * 17 15 10 19 19 C 1.39745 * 107.12136 * 179.97438 * 18 17 15 20 20 C 1.35666 * 107.88886 * 359.74064 * 19 18 17 21 21 Cl 1.73596 * 125.57960 * 180.28529 * 20 19 18 22 22 N 1.35574 * 108.84415 * 0.42804 * 20 19 18 23 23 H 0.96998 * 125.69565 * 179.82843 * 22 20 19 24 24 H 0.97000 * 120.00311 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46881 * 59.99719 * 9 7 2 26 26 H 1.09004 * 109.46892 * 300.00326 * 9 7 2 27 27 H 1.08997 * 109.47309 * 34.87150 * 11 10 9 28 28 H 1.09008 * 109.47048 * 154.87704 * 11 10 9 29 29 H 1.08996 * 115.54644 * 31.92330 * 12 11 10 30 30 H 1.09002 * 117.49912 * 359.97438 * 13 12 11 31 31 H 1.08993 * 117.50220 * 145.02537 * 13 12 11 32 32 H 1.08993 * 117.50106 * 214.98173 * 14 12 11 33 33 H 1.09003 * 117.49559 * 0.02562 * 14 12 11 34 34 H 1.07997 * 126.43791 * 0.02562 * 18 17 15 35 35 H 1.08002 * 126.05854 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.5534 -4.2781 -1.2555 12 6 1.5172 -5.3603 -1.5656 13 6 1.9867 -6.8163 -1.5389 14 6 1.6762 -6.1361 -2.8748 15 6 2.7567 -4.0248 1.1594 16 8 3.5654 -4.9343 1.1575 17 6 2.3848 -3.3776 2.4206 18 6 2.7129 -3.8125 3.6878 19 6 2.1584 -2.9022 4.5916 20 6 1.5188 -1.9427 3.8771 21 17 0.6746 -0.5805 4.5444 22 7 1.6440 -2.2234 2.5566 23 1 1.2770 -1.6974 1.8289 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.5669 -3.5459 -2.0627 28 1 3.5389 -4.7347 -1.1625 29 1 0.5034 -5.1520 -1.2240 30 1 3.0338 -7.0032 -1.3008 31 1 1.2815 -7.5659 -1.1802 32 1 0.7670 -6.4386 -3.3942 33 1 2.5193 -5.8758 -3.5148 34 1 3.2906 -4.6909 3.9350 35 1 2.2306 -2.9512 5.6681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520962099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = 37.555328 kcal Electronic energy + Delta-G solvation = -20286.208935 eV Core-core repulsion = 17119.213222 eV Total energy + Delta-G solvation = -3166.995713 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.86863 -38.70473 -36.88952 -36.17530 -35.16191 -32.87205 -30.60563 -28.96948 -27.89713 -26.16984 -23.43981 -22.16134 -21.66589 -20.38980 -19.91708 -19.40442 -17.27465 -16.73799 -16.12790 -15.61955 -14.83480 -14.62094 -14.45568 -14.03097 -13.58733 -13.31309 -13.08582 -12.61099 -12.51336 -12.17941 -12.09543 -11.56213 -11.39559 -11.31342 -11.19611 -11.08188 -10.92989 -10.70457 -10.50755 -10.22097 -9.97691 -9.67774 -9.36694 -8.94604 -8.50471 -8.01151 -7.55272 -6.54787 -4.68759 2.05001 2.20830 3.03918 3.06650 3.14813 3.19180 3.65115 3.95994 4.07154 4.11243 4.27625 4.77179 5.01937 5.16130 5.23871 5.38411 5.70626 5.73181 5.80617 5.89158 6.02968 6.09890 6.13397 6.31873 6.34182 6.41172 6.48344 6.56356 6.78190 7.07536 7.24470 7.38892 7.46015 7.60779 8.06450 8.12669 8.47143 8.84402 9.03483 10.47730 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.007526 C = 0.005398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.498617 B = 3719.672941 C = 5185.493809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.563 4.563 8 H 0.071 0.929 9 C 0.218 3.782 10 N -0.593 5.593 11 C 0.150 3.850 12 C -0.163 4.163 13 C -0.175 4.175 14 C -0.179 4.179 15 C 0.591 3.409 16 O -0.556 6.556 17 C -0.019 4.019 18 C -0.128 4.128 19 C -0.195 4.195 20 C 0.074 3.926 21 Cl -0.032 7.032 22 N -0.502 5.502 23 H 0.454 0.546 24 H 0.274 0.726 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.147 0.853 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.468 -5.021 1.932 5.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.602 4.602 8 H 0.090 0.910 9 C 0.097 3.903 10 N -0.323 5.323 11 C 0.027 3.973 12 C -0.183 4.183 13 C -0.212 4.212 14 C -0.217 4.217 15 C 0.381 3.619 16 O -0.436 6.436 17 C -0.136 4.136 18 C -0.154 4.154 19 C -0.221 4.221 20 C -0.073 4.073 21 Cl -0.004 7.004 22 N -0.114 5.114 23 H 0.314 0.686 24 H 0.083 0.917 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.165 0.835 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.534 -5.105 1.728 5.416 hybrid contribution -0.097 1.538 -0.291 1.568 sum 0.437 -3.567 1.437 3.870 Atomic orbital electron populations 1.69919 1.05928 1.28388 1.47136 1.25074 0.95080 0.99859 0.93861 0.86420 0.80515 0.82500 0.78398 1.19127 1.20190 1.20111 1.21686 0.94578 0.90101 1.53839 0.91040 1.19784 0.88190 0.83262 0.99070 1.48004 1.44576 1.33946 1.05751 1.20900 0.96834 0.93481 0.86109 1.22778 1.01081 0.93284 1.01129 1.22988 1.02272 0.95489 1.00404 1.22912 1.03052 1.04911 0.90784 1.16984 0.80583 0.82045 0.82337 1.90729 1.35156 1.31129 1.86628 1.20388 1.05723 0.92163 0.95348 1.21065 1.03572 1.01074 0.89674 1.20474 1.06035 0.96279 0.99294 1.21121 1.05868 0.94425 0.85844 1.98354 1.76514 1.42632 1.82906 1.44420 1.38675 1.20783 1.07551 0.68593 0.91652 0.93124 0.94800 0.90043 0.90115 0.87823 0.88574 0.89392 0.89102 0.88872 0.83484 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.02 13.29 55.43 0.74 -21.29 16 2 C 0.07 1.65 5.05 -17.82 -0.09 1.56 16 3 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.56 -13.70 7.28 -34.44 -0.25 -13.95 16 8 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 9 C 0.22 4.93 4.75 -5.20 -0.02 4.91 16 10 N -0.59 -12.40 2.48 -176.65 -0.44 -12.84 16 11 C 0.15 2.70 5.72 -4.04 -0.02 2.67 16 12 C -0.16 -2.58 6.01 -90.61 -0.54 -3.12 16 13 C -0.17 -2.45 10.18 -26.69 -0.27 -2.72 16 14 C -0.18 -2.29 10.26 -26.69 -0.27 -2.56 16 15 C 0.59 12.95 7.57 -12.91 -0.10 12.85 16 16 O -0.56 -12.72 16.40 5.18 0.08 -12.64 16 17 C -0.02 -0.41 6.62 -81.93 -0.54 -0.95 16 18 C -0.13 -2.37 10.66 -39.13 -0.42 -2.79 16 19 C -0.20 -3.37 10.78 -39.94 -0.43 -3.80 16 20 C 0.07 1.42 7.74 -16.82 -0.13 1.29 16 21 Cl -0.03 -0.56 29.30 -51.86 -1.52 -2.08 16 22 N -0.50 -10.74 4.79 -6.54 -0.03 -10.77 16 23 H 0.45 10.39 3.29 -40.82 -0.13 10.26 16 24 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 25 H 0.05 1.18 8.02 -51.93 -0.42 0.76 16 26 H 0.03 0.81 5.18 -51.93 -0.27 0.54 16 27 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 28 H 0.08 1.46 7.01 -51.92 -0.36 1.10 16 29 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 30 H 0.10 1.39 8.04 -51.93 -0.42 0.97 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.15 2.45 8.06 -52.49 -0.42 2.03 16 35 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -25.79 314.16 -8.65 -34.45 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -4.10 Total: 12.51 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -3.10 Total: -6.62 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.27 Total: -44.89 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.52 Total: -2.08 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -25.79 -8.65 -34.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520962099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.001 kcal (2) G-P(sol) polarization free energy of solvation -25.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds