Wall clock time and date at job start Tue Mar 31 2020 06:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00007 * 2 1 4 4 H 1.48505 * 109.46893 * 239.99721 * 3 2 1 5 5 H 1.48499 * 109.46973 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47517 * 119.99857 * 3 2 1 7 7 C 1.37878 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99891 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00463 * 0.02562 * 7 2 1 10 10 C 1.53043 * 109.46156 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31006 * 181.37458 * 10 9 7 12 12 N 1.46932 * 108.77773 * 305.36563 * 11 10 9 13 13 C 1.34777 * 120.63205 * 233.59162 * 12 11 10 14 14 O 1.21715 * 119.99910 * 6.78747 * 13 12 11 15 15 C 1.46549 * 120.00090 * 186.79380 * 13 12 11 16 16 C 1.37928 * 126.23562 * 203.94433 * 15 13 12 17 17 C 1.39747 * 107.12722 * 179.97438 * 16 15 13 18 18 C 1.35664 * 107.88172 * 359.97438 * 17 16 15 19 19 Cl 1.73600 * 125.57145 * 180.02562 * 18 17 16 20 20 N 1.35570 * 108.85219 * 0.02562 * 18 17 16 21 21 H 0.96997 * 125.70000 * 180.02562 * 20 18 17 22 22 C 1.46923 * 118.73698 * 53.85901 * 12 11 10 23 23 C 1.53041 * 109.45132 * 300.06410 * 9 7 2 24 24 H 0.96993 * 120.00598 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.45498 * 60.02502 * 9 7 2 26 26 H 1.08994 * 109.49688 * 61.42585 * 10 9 7 27 27 H 1.08999 * 109.49641 * 301.32268 * 10 9 7 28 28 H 1.09000 * 109.58871 * 185.57693 * 11 10 9 29 29 H 1.08998 * 109.70559 * 65.22102 * 11 10 9 30 30 H 1.08003 * 126.43252 * 359.95769 * 16 15 13 31 31 H 1.07996 * 126.06070 * 180.26922 * 17 16 15 32 32 H 1.09001 * 109.58507 * 65.93153 * 22 12 11 33 33 H 1.09002 * 109.58507 * 186.35545 * 22 12 11 34 34 H 1.08999 * 109.49192 * 298.56957 * 23 9 7 35 35 H 1.08998 * 109.49523 * 58.65981 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 -0.0341 12 7 0.5225 -5.0088 1.0829 13 6 0.5118 -6.0349 1.9566 14 8 1.3745 -6.8916 1.8998 15 6 -0.5386 -6.1191 2.9750 16 6 -0.4552 -6.7867 4.1791 17 6 -1.6761 -6.6069 4.8349 18 6 -2.4691 -5.8477 4.0379 19 17 -4.0891 -5.3461 4.4088 20 7 -1.7896 -5.5449 2.9045 21 1 -2.1272 -5.0124 2.1674 22 6 -0.4238 -3.8940 1.2257 23 6 0.3697 -2.5789 1.2491 24 1 -0.4851 0.8399 -0.0004 25 1 0.6252 -2.5571 -0.8900 26 1 2.8558 -3.6192 0.9028 27 1 2.8883 -3.5914 -0.8772 28 1 2.1753 -5.8175 0.0655 29 1 0.9375 -5.0738 -0.9773 30 1 0.3941 -7.3440 4.5460 31 1 -1.9397 -6.9985 5.8062 32 1 -1.1152 -3.8914 0.3830 33 1 -0.9797 -4.0037 2.1569 34 1 0.9971 -2.5458 2.1399 35 1 -0.3227 -1.7372 1.2599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528094679.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:44 Heat of formation + Delta-G solvation = 9.193096 kcal Electronic energy + Delta-G solvation = -20025.020702 eV Core-core repulsion = 16856.795111 eV Total energy + Delta-G solvation = -3168.225591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.55855 -39.22234 -36.95265 -36.79719 -33.70360 -31.89730 -31.05364 -30.22345 -28.97569 -26.31661 -23.69303 -22.72432 -21.69605 -20.85348 -20.26999 -19.27380 -17.54442 -16.70485 -16.11767 -15.52705 -15.35692 -14.63073 -14.24066 -14.14681 -13.71961 -13.22970 -13.08611 -12.93868 -12.83347 -12.62840 -12.46388 -11.89492 -11.66200 -11.43069 -11.33571 -10.98043 -10.74207 -10.51158 -10.22967 -9.90240 -9.66817 -9.28242 -9.24653 -8.99928 -8.47352 -8.35671 -8.06862 -6.11117 -4.17156 1.35712 1.51918 2.48281 3.09390 3.19491 3.25597 3.30490 3.33595 3.54391 4.35155 4.65571 5.08766 5.14507 5.18653 5.30517 5.65893 5.71098 5.77702 5.86442 5.95955 6.03367 6.09520 6.28890 6.42976 6.52749 6.64702 6.78273 6.91510 7.00084 7.03195 7.15685 7.55384 7.70905 7.80829 7.93212 8.31167 8.32792 8.85941 9.48538 10.94666 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.019056 B = 0.004818 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.015454 B = 5809.876564 C = 6904.660231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.049 3.951 10 C -0.124 4.124 11 C 0.113 3.887 12 N -0.598 5.598 13 C 0.583 3.417 14 O -0.539 6.539 15 C -0.017 4.017 16 C -0.111 4.111 17 C -0.177 4.177 18 C 0.077 3.923 19 Cl -0.020 7.020 20 N -0.530 5.530 21 H 0.427 0.573 22 C 0.084 3.916 23 C -0.121 4.121 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.042 0.958 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.826 -10.240 6.431 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.009 4.009 12 N -0.329 5.329 13 C 0.371 3.629 14 O -0.417 6.417 15 C -0.131 4.131 16 C -0.137 4.137 17 C -0.203 4.203 18 C -0.065 4.065 19 Cl 0.008 6.992 20 N -0.135 5.135 21 H 0.271 0.729 22 C -0.039 4.039 23 C -0.159 4.159 24 H 0.071 0.929 25 H 0.046 0.954 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.698 -10.404 6.241 13.859 hybrid contribution -0.076 1.458 -0.273 1.485 sum -6.774 -8.946 5.968 12.710 Atomic orbital electron populations 1.69802 1.05899 1.26706 1.50841 1.24955 0.94884 0.99132 0.94927 0.86651 0.79638 0.83014 0.78694 1.20241 1.21281 1.20272 1.21158 0.92989 0.90467 1.50481 0.92627 1.18636 0.92645 0.91921 0.93751 1.22016 0.98956 0.93951 1.01289 1.21769 0.91664 1.00182 0.87275 1.48187 1.36234 1.20552 1.27975 1.17031 0.83877 0.81908 0.80049 1.90806 1.38262 1.40789 1.71885 1.20550 0.86317 1.06082 1.00147 1.21232 0.98458 1.01333 0.92634 1.20625 0.93629 1.04652 1.01357 1.21065 0.88136 1.06216 0.91119 1.98396 1.17206 1.90572 1.92976 1.42893 1.12192 1.41582 1.16858 0.72914 1.22545 0.92377 0.88708 1.00230 1.22090 1.00060 0.93801 0.99990 0.92859 0.95418 0.92712 0.91869 0.89944 0.91893 0.82689 0.83008 0.91574 0.91323 0.93902 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.90 11.30 55.43 0.63 -23.27 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.51 -13.35 8.56 -34.44 -0.29 -13.64 16 8 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.94 16 10 C -0.12 -2.45 5.30 -26.61 -0.14 -2.60 16 11 C 0.11 1.97 6.44 -3.71 -0.02 1.95 16 12 N -0.60 -10.40 2.97 -174.09 -0.52 -10.92 16 13 C 0.58 10.27 7.62 -12.91 -0.10 10.17 16 14 O -0.54 -10.78 16.39 5.17 0.08 -10.69 16 15 C -0.02 -0.26 6.38 -81.93 -0.52 -0.78 16 16 C -0.11 -1.49 10.73 -39.13 -0.42 -1.91 16 17 C -0.18 -2.07 10.78 -39.94 -0.43 -2.50 16 18 C 0.08 0.93 7.74 -16.82 -0.13 0.80 16 19 Cl -0.02 -0.21 29.30 -51.86 -1.52 -1.73 16 20 N -0.53 -6.88 4.76 -6.54 -0.03 -6.91 16 21 H 0.43 5.06 6.40 -40.82 -0.26 4.79 16 22 C 0.08 1.42 5.35 -3.49 -0.02 1.40 16 23 C -0.12 -2.58 5.17 -26.39 -0.14 -2.72 16 24 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.15 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.07 1.04 4.19 -51.93 -0.22 0.82 16 34 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.11 2.51 6.03 -51.93 -0.31 2.20 16 LS Contribution 301.65 15.07 4.55 4.55 Total: -1.00 -28.20 301.65 -8.41 -36.61 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.08 Total: 4.22 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.50 Total: -7.36 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: 0.08 Total: -41.10 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.69 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.73 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.20 -8.41 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528094679.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.800 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds