Wall clock time and date at job start Tue Mar 31 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86809 * 120.00029 * 2 1 4 4 H 1.48497 * 109.47044 * 239.99996 * 3 2 1 5 5 H 1.48503 * 109.46865 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.46942 * 119.99763 * 3 2 1 7 7 C 1.37873 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00605 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47459 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.47148 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47031 * 180.02562 * 11 10 9 13 13 O 1.20822 * 119.99880 * 359.97438 * 12 11 10 14 14 O 1.34222 * 119.99989 * 180.02562 * 12 11 10 15 15 C 1.45200 * 117.00098 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.46954 * 179.97438 * 15 14 12 17 17 C 1.35171 * 125.60576 * 90.00495 * 16 15 14 18 18 C 1.40311 * 107.12360 * 180.02562 * 17 16 15 19 19 C 1.36648 * 106.70152 * 359.97438 * 18 17 16 20 20 C 1.46469 * 125.99311 * 180.02562 * 19 18 17 21 21 O 1.21619 * 120.00115 * 0.02562 * 20 19 18 22 22 O 1.34898 * 120.00149 * 180.02562 * 20 19 18 23 23 O 1.33912 * 125.60676 * 269.68876 * 16 15 14 24 24 H 0.96996 * 120.00086 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47368 * 59.99266 * 9 7 2 26 26 H 1.09003 * 109.46983 * 300.00283 * 9 7 2 27 27 H 1.09003 * 109.46945 * 60.00332 * 10 9 7 28 28 H 1.08998 * 109.47020 * 300.00038 * 10 9 7 29 29 H 1.09003 * 109.46727 * 60.00443 * 11 10 9 30 30 H 1.09003 * 109.47338 * 300.00540 * 11 10 9 31 31 H 1.09000 * 109.46633 * 59.99864 * 15 14 12 32 32 H 1.09000 * 109.47147 * 299.99661 * 15 14 12 33 33 H 1.07994 * 126.43682 * 359.97283 * 17 16 15 34 34 H 1.07996 * 126.64905 * 180.02562 * 18 17 16 35 35 H 0.96698 * 117.00583 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4597 -6.1325 0.0018 13 8 3.6476 -5.9117 0.0013 14 8 2.0123 -7.3980 0.0019 15 6 3.0124 -8.4507 0.0020 16 6 2.3281 -9.7935 0.0027 17 6 1.9705 -10.4952 -1.0959 18 6 1.3660 -11.6804 -0.6504 19 6 1.3858 -11.6421 0.7154 20 6 0.8606 -12.6733 1.6132 21 8 0.3496 -13.6768 1.1537 22 8 0.9435 -12.5101 2.9496 23 8 1.9798 -10.4905 1.0918 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5566 0.8903 27 1 2.8720 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 0.8535 -5.0451 -0.8887 30 1 0.8539 -5.0446 0.8914 31 1 3.6351 -8.3601 0.8919 32 1 3.6351 -8.3604 -0.8881 33 1 2.1210 -10.1988 -2.1234 34 1 0.9637 -12.4702 -1.2674 35 1 0.5835 -13.2177 3.5016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064825.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:00 Heat of formation + Delta-G solvation = -173.707106 kcal Electronic energy + Delta-G solvation = -20396.422924 eV Core-core repulsion = 16747.264268 eV Total energy + Delta-G solvation = -3649.158655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.103 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.27516 -40.48483 -40.32662 -36.75872 -36.68652 -34.36841 -33.72520 -32.27481 -31.81764 -28.59156 -27.42880 -24.38582 -23.68850 -22.20512 -21.31698 -20.99996 -19.91127 -18.99988 -18.12251 -17.69156 -16.98975 -16.82958 -16.64812 -16.14192 -15.62296 -15.08433 -14.55372 -14.42495 -14.16175 -13.67332 -13.52826 -13.44847 -12.95589 -12.60379 -12.23627 -12.14546 -11.94566 -11.51027 -11.48589 -10.92113 -10.83653 -10.74741 -10.64001 -10.59627 -10.39149 -9.78015 -9.47100 -9.24663 -9.11817 -8.36431 -6.01870 -4.04129 0.23087 1.52752 1.85448 2.32910 2.38100 2.58592 2.97343 3.33887 3.37869 3.41093 4.03513 4.32645 4.45552 4.54502 4.75386 4.79150 5.02394 5.05416 5.22324 5.34197 5.35710 5.54784 5.57520 5.75341 5.82654 5.99467 6.34557 6.35859 6.56303 6.76093 7.02120 7.28920 7.63361 7.74731 7.83116 7.97419 8.39720 9.02368 9.60142 11.09495 Molecular weight = 282.10amu Principal moments of inertia in cm(-1) A = 0.040896 B = 0.002282 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.497679 B =12265.986605 C =12493.461379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.111 4.111 12 C 0.465 3.535 13 O -0.503 6.503 14 O -0.357 6.357 15 C 0.139 3.861 16 C 0.033 3.967 17 C -0.193 4.193 18 C -0.101 4.101 19 C -0.062 4.062 20 C 0.575 3.425 21 O -0.494 6.494 22 O -0.502 6.502 23 O -0.141 6.141 24 H 0.261 0.739 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -25.576 0.768 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.148 4.148 12 C 0.309 3.691 13 O -0.390 6.390 14 O -0.275 6.275 15 C 0.065 3.935 16 C -0.020 4.020 17 C -0.212 4.212 18 C -0.120 4.120 19 C -0.113 4.113 20 C 0.418 3.582 21 O -0.384 6.384 22 O -0.314 6.314 23 O -0.036 6.036 24 H 0.071 0.929 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.129 0.871 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 2.626 -25.291 0.727 25.437 hybrid contribution 0.256 0.311 0.243 0.471 sum 2.883 -24.980 0.970 25.165 Atomic orbital electron populations 1.69944 1.06043 1.26791 1.50768 1.25017 0.94870 0.99293 0.95270 0.86633 0.79560 0.82991 0.78683 1.20207 1.21301 1.20213 1.21187 0.93138 0.90893 1.50739 0.92569 1.19125 0.93878 0.91117 0.97490 1.21604 0.99006 0.91102 1.02070 1.21753 0.97276 0.90244 1.05543 1.24537 0.90371 0.82690 0.71535 1.90666 1.18381 1.84802 1.45121 1.86631 1.40057 1.15945 1.84904 1.21140 0.88299 0.78572 1.05468 1.22364 1.01033 0.94390 0.84220 1.21749 1.03930 0.95142 1.00353 1.22046 0.98802 0.99081 0.92091 1.20667 1.08851 0.88977 0.92780 1.18801 0.75340 0.83185 0.80826 1.91019 1.41946 1.27940 1.77463 1.84683 1.76718 1.52142 1.17866 1.84117 1.58283 1.26762 1.34445 0.92906 0.96321 0.96315 0.92341 0.92321 0.87824 0.87853 0.88813 0.87110 0.81474 0.81284 0.71984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.10 -2.02 4.44 -26.73 -0.12 -2.14 16 11 C -0.11 -1.73 5.81 -27.88 -0.16 -1.89 16 12 C 0.46 7.02 7.96 36.01 0.29 7.30 16 13 O -0.50 -8.80 15.73 -18.75 -0.29 -9.09 16 14 O -0.36 -4.63 10.20 -39.24 -0.40 -5.03 16 15 C 0.14 1.41 5.99 36.01 0.22 1.63 16 16 C 0.03 0.33 6.95 -35.40 -0.25 0.08 16 17 C -0.19 -1.59 10.77 -39.89 -0.43 -2.02 16 18 C -0.10 -0.86 10.62 -39.38 -0.42 -1.27 16 19 C -0.06 -0.63 7.18 -36.84 -0.26 -0.89 16 20 C 0.57 5.42 8.30 34.05 0.28 5.71 16 21 O -0.49 -5.49 17.65 -19.36 -0.34 -5.83 16 22 O -0.50 -3.61 13.44 -42.48 -0.57 -4.18 16 23 O -0.14 -1.57 10.67 4.74 0.05 -1.52 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 28 H 0.06 1.21 8.10 -51.93 -0.42 0.78 16 29 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.09 0.92 8.13 -51.93 -0.42 0.49 16 32 H 0.11 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.17 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.42 0.79 9.11 45.56 0.42 1.20 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -34.35 325.73 -5.69 -40.03 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -3.35 Total: -3.45 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.40 Total: -6.56 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -1.56 Total: -25.66 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.35 -5.69 -40.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064825.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.672 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds