Wall clock time and date at job start Tue Mar 31 2020 05:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50698 * 120.00136 * 2 1 4 4 N 1.46900 * 109.47312 * 124.99645 * 3 2 1 5 5 C 1.46906 * 110.99929 * 288.70913 * 4 3 2 6 6 C 1.50701 * 109.47060 * 160.28855 * 5 4 3 7 7 H 1.08001 * 119.99773 * 1.52291 * 6 5 4 8 8 C 1.37876 * 119.99928 * 181.52109 * 6 5 4 9 9 N 1.31509 * 119.99867 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99958 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47233 * 90.00021 * 10 8 6 12 12 H 1.48499 * 109.47263 * 210.00261 * 10 8 6 13 13 H 1.48503 * 109.47026 * 329.99888 * 10 8 6 14 14 C 1.46896 * 111.00360 * 164.75291 * 4 3 2 15 15 C 1.50707 * 109.46781 * 293.95903 * 14 4 3 16 16 N 1.29384 * 124.71052 * 89.97400 * 15 14 4 17 17 C 1.30911 * 117.46927 * 180.02562 * 16 15 14 18 18 C 1.36756 * 113.93135 * 359.97438 * 17 16 15 19 19 C 1.46500 * 126.17694 * 179.97438 * 18 17 16 20 20 O 1.21616 * 119.99844 * 180.02562 * 19 18 17 21 21 O 1.34883 * 120.00331 * 0.02667 * 19 18 17 22 22 S 1.70928 * 124.70150 * 270.01204 * 15 14 4 23 23 H 1.08008 * 119.99988 * 180.02562 * 1 2 3 24 24 H 1.07995 * 120.00214 * 0.02562 * 1 2 3 25 25 H 1.08001 * 119.99779 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46659 * 5.00005 * 3 2 1 27 27 H 1.08994 * 109.46942 * 244.99816 * 3 2 1 28 28 H 1.09003 * 109.46857 * 280.28390 * 5 4 3 29 29 H 1.08992 * 109.47109 * 40.28856 * 5 4 3 30 30 H 0.97004 * 119.99555 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.47709 * 173.95615 * 14 4 3 32 32 H 1.09004 * 109.47075 * 53.94810 * 14 4 3 33 33 H 1.08005 * 123.03136 * 179.73317 * 17 16 15 34 34 H 0.96694 * 116.99688 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1346 5 6 2.2744 1.4725 2.4063 6 6 3.1598 1.0207 3.5390 7 1 4.1673 0.6881 3.3372 8 6 2.6837 1.0321 4.8329 9 7 1.4571 1.4377 5.0786 10 14 3.7810 0.4715 6.2369 11 1 4.5371 1.6337 6.7687 12 1 2.9444 -0.1108 7.3168 13 1 4.7337 -0.5542 5.7413 14 6 3.9911 2.4007 0.9730 15 6 4.8731 2.0913 -0.2091 16 7 4.6349 2.4664 -1.4243 17 6 5.4985 2.1177 -2.3442 18 6 6.5530 1.3890 -1.8675 19 6 7.6684 0.8628 -2.6582 20 8 8.5508 0.2254 -2.1159 21 8 7.7168 1.0853 -3.9877 22 16 6.3267 1.1955 -0.1307 23 1 -0.5400 -0.9354 0.0004 24 1 -0.5400 0.9352 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0896 27 1 2.6213 1.4025 -0.9313 28 1 1.9993 2.5168 2.5545 29 1 1.3737 0.8593 2.3825 30 1 1.1220 1.4454 5.9889 31 1 4.6012 2.4684 1.8737 32 1 3.4812 3.3497 0.8073 33 1 5.3863 2.3785 -3.3863 34 1 8.4724 0.7187 -4.4669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602890909.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:30 Heat of formation + Delta-G solvation = -16.031578 kcal Electronic energy + Delta-G solvation = -19205.408001 eV Core-core repulsion = 16038.132292 eV Total energy + Delta-G solvation = -3167.275709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36888 -39.50852 -37.12597 -36.23587 -33.28664 -32.62754 -30.95835 -28.22205 -27.20029 -24.88389 -23.48196 -22.91924 -21.00711 -20.03060 -19.23208 -18.28958 -17.54859 -16.79480 -16.49174 -15.92797 -15.40172 -14.87704 -14.48391 -14.31299 -14.16148 -13.73010 -13.50235 -13.31047 -12.60880 -12.15571 -11.80923 -11.58776 -11.52345 -11.46513 -11.19261 -11.06394 -10.74176 -10.68629 -10.54728 -10.07323 -9.62324 -9.54520 -9.33590 -8.92989 -8.81549 -8.48103 -7.51531 -6.08207 -4.10762 0.10827 1.07969 1.72940 2.17826 2.76943 2.91817 3.00922 3.28542 3.35849 3.39707 4.10793 4.38335 4.88391 4.90734 5.08051 5.26083 5.27815 5.51630 5.64934 5.73631 5.93471 6.00911 6.15801 6.19725 6.21116 6.38984 7.03647 7.09990 7.14044 7.27612 7.56864 7.67498 7.72539 7.92796 8.04158 8.39206 8.95866 9.54077 11.02042 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.004832 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.434688 B = 5793.208302 C = 6895.040332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C 0.072 3.928 4 N -0.526 5.526 5 C 0.194 3.806 6 C -0.512 4.512 7 H 0.063 0.937 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.125 3.875 15 C 0.085 3.915 16 N -0.492 5.492 17 C 0.135 3.865 18 C -0.336 4.336 19 C 0.571 3.429 20 O -0.516 6.516 21 O -0.508 6.508 22 S 0.275 5.725 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.033 0.967 27 H 0.078 0.922 28 H -0.004 1.004 29 H 0.043 0.957 30 H 0.262 0.738 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.186 0.814 34 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.540 1.076 -15.063 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.142 4.142 3 C -0.055 4.055 4 N -0.252 5.252 5 C 0.069 3.931 6 C -0.550 4.550 7 H 0.081 0.919 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 C -0.006 4.006 15 C -0.187 4.187 16 N -0.207 5.207 17 C -0.027 4.027 18 C -0.459 4.459 19 C 0.414 3.586 20 O -0.406 6.406 21 O -0.320 6.320 22 S 0.535 5.465 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.126 0.874 26 H 0.051 0.949 27 H 0.096 0.904 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.203 0.797 34 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 7.632 0.457 -13.697 15.686 hybrid contribution 0.387 0.400 -0.473 0.730 sum 8.019 0.856 -14.169 16.304 Atomic orbital electron populations 1.23693 0.95939 1.01233 1.03193 1.22808 0.95392 0.98560 0.97392 1.21315 0.94640 0.94413 0.95179 1.62204 1.15800 1.43114 1.04072 1.19832 0.94181 0.95920 0.83150 1.21128 0.99822 1.43505 0.90577 0.91854 1.24962 0.95117 0.95393 0.98859 1.69951 1.15537 1.47387 1.20608 0.86539 0.80419 0.78970 0.81778 1.20673 1.21243 1.19674 1.20794 0.93749 0.94662 0.91433 1.28022 0.98041 0.95854 0.96791 1.66276 1.30123 1.24575 0.99689 1.22634 0.87355 0.92324 1.00436 1.24945 1.04104 1.17514 0.99368 1.19065 0.83353 0.76014 0.80193 1.90963 1.38862 1.38664 1.72150 1.84565 1.52039 1.74324 1.21099 1.84338 1.17445 1.45816 0.98890 0.88893 0.89072 0.87438 0.94876 0.90399 0.98640 0.93947 0.92835 0.87168 0.91966 0.79741 0.72527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.24 14.32 29.01 0.42 -2.83 16 2 C -0.12 -2.14 8.71 -36.03 -0.31 -2.45 16 3 C 0.07 1.30 5.28 -4.98 -0.03 1.28 16 4 N -0.53 -10.57 4.37 -238.96 -1.04 -11.62 16 5 C 0.19 4.72 4.59 -4.97 -0.02 4.70 16 6 C -0.51 -13.52 8.58 -34.44 -0.30 -13.82 16 7 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 10 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.12 2.19 5.36 -4.97 -0.03 2.17 16 15 C 0.09 1.33 6.08 -13.31 -0.08 1.25 16 16 N -0.49 -7.29 9.32 -11.26 -0.10 -7.40 16 17 C 0.14 1.70 11.20 -18.48 -0.21 1.50 16 18 C -0.34 -4.46 6.51 -36.79 -0.24 -4.70 16 19 C 0.57 7.08 8.30 34.06 0.28 7.36 16 20 O -0.52 -7.81 17.75 -19.35 -0.34 -8.15 16 21 O -0.51 -4.33 13.23 -40.99 -0.54 -4.87 16 22 S 0.28 3.98 23.00 -107.50 -2.47 1.51 16 23 H 0.09 1.33 8.06 -52.48 -0.42 0.90 16 24 H 0.09 1.41 7.84 -52.49 -0.41 1.00 16 25 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 26 H 0.03 0.61 7.71 -51.93 -0.40 0.20 16 27 H 0.08 1.34 6.05 -51.93 -0.31 1.02 16 28 H 0.00 -0.11 8.00 -51.93 -0.42 -0.52 16 29 H 0.04 1.13 7.09 -51.93 -0.37 0.76 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.11 1.98 7.38 -51.93 -0.38 1.59 16 32 H 0.06 1.07 8.12 -51.93 -0.42 0.65 16 33 H 0.19 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.42 1.54 9.11 45.56 0.42 1.96 16 LS Contribution 317.75 15.07 4.79 4.79 Total: -1.00 -30.94 317.75 -7.72 -38.67 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -3.11 Total: 0.19 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.61 Total: -4.05 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: -0.41 Total: -43.94 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.89 Total: -13.03 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -2.47 Total: 1.51 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.94 -7.72 -38.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602890909.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.636 kcal (2) G-P(sol) polarization free energy of solvation -30.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds