Wall clock time and date at job start Tue Mar 31 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29934 * 119.99939 * 2 1 4 4 N 1.40101 * 120.00097 * 359.97438 * 3 2 1 5 5 C 1.46506 * 120.00104 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46566 * 329.99513 * 5 4 3 7 7 C 1.52997 * 109.47289 * 89.99778 * 5 4 3 8 8 C 1.50697 * 109.47015 * 210.00236 * 5 4 3 9 9 H 1.07998 * 120.00039 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99815 * 179.97438 * 8 5 4 11 11 N 1.31508 * 119.99915 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99777 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.46954 * 59.99790 * 12 10 8 14 14 H 1.48496 * 109.47069 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47158 * 300.00368 * 12 10 8 16 16 C 1.46868 * 119.99953 * 179.97438 * 2 1 3 17 17 C 1.34665 * 125.04005 * 180.02562 * 16 2 1 18 18 C 1.39534 * 113.57726 * 180.02562 * 17 16 2 19 19 C 1.47100 * 122.99424 * 179.97438 * 18 17 16 20 20 O 1.21558 * 120.00197 * 359.97438 * 19 18 17 21 21 O 1.34799 * 119.99696 * 179.97438 * 19 18 17 22 22 C 1.36368 * 114.01289 * 359.97438 * 18 17 16 23 23 S 1.70582 * 110.58899 * 359.73394 * 22 18 17 24 24 H 1.08998 * 109.46641 * 90.00658 * 1 2 3 25 25 H 1.08994 * 109.47194 * 210.00156 * 1 2 3 26 26 H 1.08996 * 109.46949 * 330.00293 * 1 2 3 27 27 H 0.96995 * 119.99712 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 29 29 H 1.09001 * 109.46832 * 60.00146 * 7 5 4 30 30 H 1.09004 * 109.47261 * 300.00128 * 7 5 4 31 31 H 0.97001 * 119.99839 * 180.02562 * 11 10 8 32 32 H 1.08008 * 123.20714 * 359.97438 * 17 16 2 33 33 H 0.96702 * 116.99194 * 180.02562 * 21 19 18 34 34 H 1.07996 * 124.70528 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1567 1.1253 0.0000 4 7 1.4562 2.3386 -0.0005 5 6 2.1887 3.6074 -0.0011 6 1 3.1410 3.4772 0.5129 7 6 2.4438 4.0484 -1.4438 8 6 1.3743 4.6579 0.7089 9 1 0.4075 4.4058 1.1191 10 6 1.8633 5.9409 0.8347 11 7 3.0407 6.2476 0.3356 12 14 0.8534 7.2433 1.7142 13 1 0.6048 6.8150 3.1143 14 1 1.5959 8.5293 1.7137 15 1 -0.4437 7.4208 1.0132 16 6 2.2413 -1.2719 0.0006 17 6 3.5828 -1.3902 0.0011 18 6 4.0264 -2.7132 0.0010 19 6 5.4508 -3.0804 0.0010 20 8 6.3022 -2.2128 0.0006 21 8 5.8119 -4.3791 0.0014 22 6 3.0218 -3.6353 0.0009 23 16 1.5000 -2.8646 0.0084 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.4862 2.3385 -0.0013 28 1 2.9884 4.9926 -1.4442 29 1 1.4913 4.1785 -1.9577 30 1 3.0329 3.2885 -1.9573 31 1 3.3849 7.1502 0.4245 32 1 4.2514 -0.5420 0.0008 33 1 6.7597 -4.5712 0.0018 34 1 3.1692 -4.7052 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602990734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:18 Heat of formation + Delta-G solvation = -22.377008 kcal Electronic energy + Delta-G solvation = -18810.822307 eV Core-core repulsion = 15643.271439 eV Total energy + Delta-G solvation = -3167.550868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28067 -37.94606 -36.67822 -36.03702 -34.41199 -31.98566 -29.81181 -28.63138 -26.62764 -25.65339 -25.21985 -23.11561 -20.67362 -19.69887 -19.14094 -18.09147 -17.49382 -16.56863 -16.22789 -15.69698 -15.39768 -15.07392 -14.23634 -14.09304 -13.73521 -13.10727 -13.03638 -12.80582 -12.54262 -12.46608 -12.13670 -11.92503 -11.63621 -11.37786 -11.30848 -11.05970 -10.86666 -10.55454 -10.50710 -10.26615 -10.24817 -9.60988 -9.12796 -8.91927 -8.68076 -8.52145 -6.84193 -6.16452 -4.25614 0.47855 1.37342 1.63467 1.80072 2.89935 3.00506 3.23710 3.28826 3.29890 3.33544 3.77852 4.34140 4.77402 4.99088 5.15942 5.18638 5.33769 5.42479 5.59941 5.70096 5.88306 6.07582 6.33930 6.37709 6.47114 6.65432 6.88350 6.96859 7.10735 7.53316 7.72688 7.80613 7.83005 8.08537 8.23579 8.80377 9.20435 9.41220 10.89347 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.024241 B = 0.003561 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.767347 B = 7860.027777 C = 8671.787490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.026 3.974 3 N -0.176 5.176 4 N -0.611 5.611 5 C 0.295 3.705 6 H 0.044 0.956 7 C -0.150 4.150 8 C -0.534 4.534 9 H 0.059 0.941 10 C 0.068 3.932 11 N -0.884 5.884 12 Si 0.904 3.096 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.276 1.276 16 C -0.109 4.109 17 C -0.088 4.088 18 C -0.134 4.134 19 C 0.544 3.456 20 O -0.508 6.508 21 O -0.516 6.516 22 C -0.211 4.211 23 S 0.227 5.773 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.372 0.628 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.014 0.986 31 H 0.266 0.734 32 H 0.161 0.839 33 H 0.412 0.588 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 -20.296 -1.375 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 N 0.007 4.993 4 N -0.349 5.349 5 C 0.193 3.807 6 H 0.062 0.938 7 C -0.209 4.209 8 C -0.573 4.573 9 H 0.078 0.922 10 C -0.135 4.135 11 N -0.521 5.521 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.202 1.202 16 C -0.229 4.229 17 C -0.118 4.118 18 C -0.150 4.150 19 C 0.386 3.614 20 O -0.397 6.397 21 O -0.328 6.328 22 C -0.351 4.351 23 S 0.493 5.507 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.210 0.790 28 H 0.110 0.890 29 H 0.045 0.955 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.178 0.822 33 H 0.270 0.730 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -2.990 -19.682 -1.384 19.956 hybrid contribution 0.532 0.851 0.430 1.092 sum -2.458 -18.830 -0.954 19.014 Atomic orbital electron populations 1.20976 0.92645 1.02928 1.02517 1.21179 0.92137 0.89351 1.13505 1.74178 1.28189 0.92979 1.03913 1.49186 1.06431 1.00209 1.79024 1.18619 0.92886 0.76042 0.93187 0.93825 1.22203 0.99275 1.01925 0.97540 1.21164 1.04561 0.94410 1.37161 0.92239 1.24854 0.95118 0.98215 0.95340 1.69877 1.17302 1.20514 1.44457 0.86475 0.79954 0.80417 0.80071 1.20142 1.21035 1.20153 1.22167 0.95353 0.95420 1.09911 1.20291 0.94562 0.96012 1.00935 1.18133 0.90088 0.93572 1.13249 1.20298 0.89149 0.79836 0.72164 1.90942 1.52509 1.50301 1.45903 1.84564 1.33831 1.28185 1.86267 1.25898 0.97728 1.04621 1.06839 1.82867 1.05250 0.95195 1.67391 0.91129 0.91551 0.91135 0.79037 0.89048 0.95483 0.96734 0.92416 0.82185 0.72952 0.80588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.74 9.28 36.01 0.33 -1.41 16 2 C 0.03 0.43 7.11 -79.90 -0.57 -0.14 16 3 N -0.18 -3.60 11.10 35.00 0.39 -3.21 16 4 N -0.61 -13.30 5.95 -5.88 -0.04 -13.33 16 5 C 0.29 7.47 3.23 -69.08 -0.22 7.25 16 6 H 0.04 1.24 8.14 -51.93 -0.42 0.82 16 7 C -0.15 -3.69 9.29 37.16 0.35 -3.34 16 8 C -0.53 -14.20 8.74 -34.44 -0.30 -14.50 16 9 H 0.06 1.53 7.79 -52.49 -0.41 1.13 16 10 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 11 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16 12 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 13 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 16 C -0.11 -1.60 6.34 -37.36 -0.24 -1.83 16 17 C -0.09 -1.37 9.46 -40.36 -0.38 -1.75 16 18 C -0.13 -1.78 5.82 -106.49 -0.62 -2.40 16 19 C 0.54 7.17 8.29 34.33 0.28 7.46 16 20 O -0.51 -8.47 17.49 -19.31 -0.34 -8.81 16 21 O -0.52 -4.69 13.05 -40.76 -0.53 -5.22 16 22 C -0.21 -2.17 10.56 30.06 0.32 -1.86 16 23 S 0.23 2.29 21.97 -107.50 -2.36 -0.08 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.72 7.36 -51.93 -0.38 0.33 16 26 H 0.07 0.99 6.35 -51.93 -0.33 0.66 16 27 H 0.37 7.39 6.37 -182.60 -1.16 6.23 16 28 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.16 2.85 7.91 -52.48 -0.42 2.43 16 33 H 0.41 1.88 9.11 45.56 0.42 2.30 16 34 H 0.18 1.34 8.00 -52.49 -0.42 0.92 16 LS Contribution 315.01 15.07 4.75 4.75 Total: -1.00 -31.10 315.01 -7.51 -38.61 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.84 Total: 6.45 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.14 Total: -10.79 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.98 Total: -40.50 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.87 Total: -14.03 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.36 Total: -0.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.10 -7.51 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602990734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.233 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds