Wall clock time and date at job start Tue Mar 31 2020 06:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99897 * 2 1 4 4 H 1.48498 * 109.46930 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46728 * 299.99892 * 3 2 1 6 6 H 1.48498 * 109.47443 * 59.99495 * 3 2 1 7 7 C 1.37874 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.53040 * 109.46117 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31176 * 178.62957 * 10 9 7 12 12 N 1.46927 * 108.77724 * 54.63244 * 11 10 9 13 13 C 1.34774 * 120.62753 * 126.36874 * 12 11 10 14 14 O 1.21587 * 120.00433 * 354.60327 * 13 12 11 15 15 N 1.34782 * 119.99994 * 174.60574 * 13 12 11 16 16 C 1.40158 * 120.00191 * 185.80730 * 15 13 12 17 17 C 1.38325 * 123.72959 * 7.59677 * 16 15 13 18 18 N 1.29967 * 115.36434 * 179.80027 * 17 16 15 19 19 S 1.56237 * 108.98831 * 0.45383 * 18 17 16 20 20 N 1.31246 * 123.72553 * 187.90000 * 16 15 13 21 21 C 1.46920 * 118.73762 * 306.64285 * 12 11 10 22 22 C 1.52754 * 109.01084 * 53.31149 * 21 12 11 23 23 H 0.97001 * 120.00218 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46004 * 299.97033 * 9 7 2 25 25 H 1.08996 * 109.50054 * 58.67437 * 10 9 7 26 26 H 1.09000 * 109.52063 * 298.59415 * 10 9 7 27 27 H 1.09006 * 109.58678 * 294.84334 * 11 10 9 28 28 H 1.09007 * 109.70184 * 174.49057 * 11 10 9 29 29 H 0.97003 * 119.99364 * 5.79638 * 15 13 12 30 30 H 1.07997 * 122.31900 * 0.03313 * 17 16 15 31 31 H 1.09004 * 109.58634 * 173.14743 * 21 12 11 32 32 H 1.09001 * 109.58778 * 293.56811 * 21 12 11 33 33 H 1.08996 * 109.56921 * 185.55272 * 22 21 12 34 34 H 1.08998 * 109.39012 * 65.50998 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6621 0.0005 11 6 1.4768 -4.9866 0.0351 12 7 0.5226 -5.0087 -1.0819 13 6 0.5125 -6.0343 -1.9561 14 8 1.3599 -6.9032 -1.8838 15 7 -0.4371 -6.0969 -2.9106 16 6 -0.5223 -7.2223 -3.7417 17 6 0.2236 -8.3723 -3.5562 18 7 0.0122 -9.3187 -4.4216 19 16 -1.0575 -8.8351 -5.4525 20 7 -1.3144 -7.2992 -4.7853 21 6 -0.4163 -3.8885 -1.2312 22 6 0.3702 -2.5790 -1.2484 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5567 0.8907 25 1 2.8883 -3.5914 0.8782 26 1 2.8563 -3.6193 -0.9015 27 1 0.9372 -5.0713 0.9785 28 1 2.1738 -5.8189 -0.0632 29 1 -1.0616 -5.3631 -3.0222 30 1 0.9299 -8.4781 -2.7461 31 1 -0.9665 -3.9950 -2.1661 32 1 -1.1134 -3.8818 -0.3933 33 1 -0.3223 -1.7374 -1.2596 34 1 0.9978 -2.5456 -2.1389 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001624556747.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:02 Heat of formation + Delta-G solvation = 40.291642 kcal Electronic energy + Delta-G solvation = -19851.035869 eV Core-core repulsion = 16718.495269 eV Total energy + Delta-G solvation = -3132.540600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23911 -39.60197 -37.18372 -35.11106 -33.70200 -32.52076 -31.14136 -30.24217 -26.67254 -25.63265 -23.54960 -22.66131 -21.67322 -20.52991 -19.62864 -18.38293 -18.03036 -16.84683 -16.34694 -16.10109 -15.69912 -14.89930 -14.86064 -14.57575 -13.95139 -13.33909 -13.06245 -12.85485 -12.58781 -12.33427 -11.79988 -11.76979 -11.47449 -11.17998 -11.02806 -10.93145 -10.71218 -10.50998 -10.30271 -10.15415 -10.00709 -9.71394 -9.29563 -9.08567 -8.62525 -8.46325 -8.16014 -6.12038 -4.17973 0.46955 1.02996 1.62734 2.06750 2.71373 3.16731 3.22444 3.31560 3.35304 3.72457 4.34574 4.40184 5.05928 5.16065 5.27565 5.56983 5.69373 5.75151 5.86988 5.99574 6.01821 6.10684 6.24832 6.32428 6.50864 6.66183 6.82602 6.97654 6.99124 7.18958 7.56283 7.79446 7.80555 7.93239 8.30243 8.36080 8.85765 9.48042 10.93667 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.038427 B = 0.003597 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.486746 B = 7782.559971 C = 8170.318983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.056 0.944 9 C 0.048 3.952 10 C -0.125 4.125 11 C 0.127 3.873 12 N -0.601 5.601 13 C 0.712 3.288 14 O -0.579 6.579 15 N -0.641 5.641 16 C 0.339 3.661 17 C 0.031 3.969 18 N -0.509 5.509 19 S 0.502 5.498 20 N -0.532 5.532 21 C 0.104 3.896 22 C -0.126 4.126 23 H 0.260 0.740 24 H 0.029 0.971 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.421 0.579 30 H 0.232 0.768 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.767 -12.538 -5.632 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.030 3.970 10 C -0.164 4.164 11 C 0.005 3.995 12 N -0.336 5.336 13 C 0.413 3.587 14 O -0.458 6.458 15 N -0.298 5.298 16 C 0.068 3.932 17 C -0.175 4.175 18 N -0.345 5.345 19 S 0.541 5.459 20 N -0.374 5.374 21 C -0.018 4.018 22 C -0.164 4.164 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.262 0.738 30 H 0.247 0.753 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.126 0.874 34 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.194 -13.883 -7.194 16.189 hybrid contribution 0.784 2.179 1.197 2.607 sum -3.410 -11.704 -5.997 13.586 Atomic orbital electron populations 1.69823 1.05861 1.26491 1.50930 1.24957 0.94882 0.99136 0.94973 0.86553 0.80212 0.83753 0.77600 1.19798 1.21056 1.21014 1.21232 0.93049 0.90467 1.50271 0.92550 1.18642 0.92639 0.91903 0.93828 1.22043 0.98965 0.93972 1.01375 1.21766 0.91077 1.00197 0.86480 1.47501 1.38159 1.19947 1.27952 1.15643 0.80800 0.83207 0.79012 1.90713 1.39419 1.40836 1.74794 1.42348 1.35698 1.18749 1.32969 1.19593 0.93873 0.89789 0.89959 1.24457 1.03851 0.87026 1.02128 1.72333 1.19161 1.33183 1.09816 1.82271 1.30176 1.01544 1.31933 1.76628 1.28237 1.19314 1.13267 1.21997 0.91773 0.87798 1.00209 1.21987 1.00250 0.94228 0.99981 0.92959 0.95247 0.91709 0.92722 0.91634 0.89724 0.73831 0.75279 0.92382 0.91051 0.87411 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.39 11.30 55.43 0.63 -22.76 16 2 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 3 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -12.96 8.56 -34.44 -0.29 -13.26 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.05 1.06 2.07 -91.73 -0.19 0.87 16 10 C -0.13 -2.33 5.30 -26.61 -0.14 -2.47 16 11 C 0.13 2.02 6.44 -3.71 -0.02 2.00 16 12 N -0.60 -9.45 2.98 -178.76 -0.53 -9.98 16 13 C 0.71 11.10 8.23 -86.92 -0.72 10.39 16 14 O -0.58 -9.95 12.68 5.29 0.07 -9.89 16 15 N -0.64 -8.75 5.36 -18.42 -0.10 -8.85 16 16 C 0.34 4.75 7.79 -155.15 -1.21 3.55 16 17 C 0.03 0.43 10.25 -18.31 -0.19 0.24 16 18 N -0.51 -6.86 11.40 19.77 0.23 -6.64 16 19 S 0.50 5.72 24.22 -107.50 -2.60 3.11 16 20 N -0.53 -7.21 12.22 29.05 0.35 -6.85 16 21 C 0.10 1.63 6.36 -3.94 -0.03 1.60 16 22 C -0.13 -2.54 5.14 -26.83 -0.14 -2.68 16 23 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 1.31 6.99 -51.93 -0.36 0.95 16 29 H 0.42 5.04 6.32 -40.82 -0.26 4.79 16 30 H 0.23 3.37 5.41 -52.49 -0.28 3.09 16 31 H 0.06 0.75 5.65 -51.93 -0.29 0.46 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.11 2.46 6.03 -51.93 -0.31 2.14 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 291.76 15.07 4.40 4.40 Total: -1.00 -27.23 291.76 -9.19 -36.42 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.59 Total: 4.14 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -3.02 Total: 1.74 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.58 Total: -55.08 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -2.60 Total: 3.11 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.23 -9.19 -36.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001624556747.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.711 kcal (2) G-P(sol) polarization free energy of solvation -27.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds