Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.41337 * 126.48841 * 47.11002 * 3 2 1 5 5 N 1.30401 * 108.20933 * 180.02562 * 4 3 2 6 6 N 1.39906 * 109.17243 * 359.97438 * 5 4 3 7 7 H 0.97002 * 125.77382 * 179.97438 * 6 5 4 8 8 C 1.34938 * 108.45869 * 0.02562 * 6 5 4 9 9 N 1.38479 * 126.43225 * 180.02562 * 8 6 5 10 10 C 1.34784 * 120.00163 * 359.97438 * 9 8 6 11 11 O 1.21595 * 119.99695 * 359.97438 * 10 9 8 12 12 C 1.47552 * 119.99917 * 179.97438 * 10 9 8 13 13 C 1.40054 * 119.90073 * 359.72220 * 12 10 9 14 14 C 1.36289 * 120.10196 * 179.71987 * 13 12 10 15 15 C 1.40905 * 119.89823 * 0.55298 * 14 13 12 16 16 C 1.41070 * 120.10271 * 179.69651 * 15 14 13 17 17 H 1.08002 * 119.99907 * 204.67258 * 16 15 14 18 18 C 1.40231 * 120.00026 * 24.67461 * 16 15 14 19 19 N 1.30643 * 120.00329 * 17.86895 * 18 16 15 20 20 Si 1.86803 * 120.00153 * 197.86799 * 18 16 15 21 21 H 1.48500 * 109.46845 * 60.00004 * 20 18 16 22 22 H 1.48494 * 109.47295 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47205 * 300.00139 * 20 18 16 24 24 C 1.40909 * 119.79441 * 359.71989 * 15 14 13 25 25 C 1.36289 * 119.89643 * 0.02562 * 24 15 14 26 26 H 1.07993 * 125.89656 * 0.02562 * 4 3 2 27 27 H 0.97001 * 120.00058 * 179.97438 * 9 8 6 28 28 H 1.07999 * 119.94414 * 0.02562 * 13 12 10 29 29 H 1.08007 * 120.05124 * 180.27531 * 14 13 12 30 30 H 0.96992 * 120.00635 * 180.02562 * 19 18 16 31 31 H 1.08001 * 120.04749 * 179.97438 * 24 15 14 32 32 H 1.07999 * 119.94597 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4088 -0.7724 -0.8325 5 7 4.6469 -0.4938 -0.5325 6 7 4.6683 0.4584 0.4923 7 1 5.4639 0.8358 0.8991 8 6 3.3950 0.7622 0.8198 9 7 2.9879 1.6635 1.7891 10 6 3.9054 2.3358 2.5122 11 8 5.0907 2.1506 2.3137 12 6 3.4716 3.2965 3.5447 13 6 2.1058 3.5125 3.7675 14 6 1.7005 4.3947 4.7240 15 6 2.6578 5.0986 5.4813 16 6 2.2431 6.0175 6.4680 17 1 2.8969 6.8249 6.7630 18 6 0.9818 5.8827 7.0659 19 7 0.3389 4.7482 6.9859 20 14 0.2207 7.3252 7.9767 21 1 0.0549 8.4680 7.0431 22 1 -1.1059 6.9279 8.5126 23 1 1.1081 7.7265 9.0978 24 6 4.0308 4.8822 5.2495 25 6 4.4268 3.9942 4.2945 26 1 3.0823 -1.4727 -1.5869 27 1 2.0424 1.8110 1.9478 28 1 1.3728 2.9755 3.1839 29 1 0.6470 4.5574 4.8983 30 1 -0.5337 4.6549 7.3991 31 1 4.7681 5.4199 5.8273 32 1 5.4789 3.8281 4.1159 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001638660130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = 78.826753 kcal Electronic energy + Delta-G solvation = -20025.648993 eV Core-core repulsion = 16759.335450 eV Total energy + Delta-G solvation = -3266.313543 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.086 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66886 -39.46256 -37.47765 -36.31387 -34.95672 -34.17780 -31.59946 -30.74110 -29.74810 -29.36921 -26.30974 -23.44355 -22.47633 -21.94981 -21.23028 -20.22069 -19.09218 -17.78565 -17.11003 -16.59960 -15.73459 -15.66379 -15.56573 -14.63165 -14.27329 -14.26215 -13.97278 -13.50561 -13.08792 -13.07777 -12.98753 -12.50139 -12.38109 -12.23530 -11.69906 -11.44806 -11.28984 -11.13181 -10.91745 -10.89386 -10.37158 -9.83728 -9.69333 -9.57319 -9.49580 -8.29681 -8.00395 -7.83708 -7.29600 -4.87559 1.28778 1.98567 2.13696 2.35244 2.76195 2.76230 2.79996 2.82351 2.84323 3.24717 3.39062 3.56091 3.66530 4.14694 4.25992 4.86265 4.91958 5.26153 5.28772 5.51029 5.75501 5.89793 6.02902 6.28911 6.52198 6.56438 6.72238 6.82662 7.02239 7.17336 7.27624 7.41019 7.53147 7.59437 7.69496 7.71290 7.79478 8.12388 8.27324 8.35089 8.46896 9.61122 Molecular weight = 282.09amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.003713 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.000341 B = 7538.411615 C = 8484.667004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.295 3.705 3 C -0.249 4.249 4 C 0.121 3.879 5 N -0.293 5.293 6 N -0.452 5.452 7 H 0.457 0.543 8 C 0.409 3.591 9 N -0.650 5.650 10 C 0.574 3.426 11 O -0.561 6.561 12 C -0.299 4.299 13 C -0.059 4.059 14 C -0.175 4.175 15 C 0.130 3.870 16 C -0.425 4.425 17 H 0.090 0.910 18 C 0.072 3.928 19 N -0.758 5.758 20 Si 0.918 3.082 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.238 4.238 25 C -0.010 4.010 26 H 0.196 0.804 27 H 0.428 0.572 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.292 0.708 31 H 0.102 0.898 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.559 -3.518 -5.976 7.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.019 4.019 3 C -0.269 4.269 4 C -0.070 4.070 5 N -0.114 5.114 6 N -0.171 5.171 7 H 0.312 0.688 8 C 0.175 3.825 9 N -0.297 5.297 10 C 0.375 3.625 11 O -0.441 6.441 12 C -0.304 4.304 13 C -0.078 4.078 14 C -0.194 4.194 15 C 0.126 3.874 16 C -0.452 4.452 17 H 0.108 0.892 18 C -0.152 4.152 19 N -0.380 5.380 20 Si 0.741 3.259 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.184 1.184 24 C -0.257 4.257 25 C -0.030 4.030 26 H 0.213 0.787 27 H 0.269 0.731 28 H 0.107 0.893 29 H 0.141 0.859 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.681 -3.932 -6.183 7.518 hybrid contribution -0.990 0.910 0.957 1.650 sum 0.691 -3.023 -5.226 6.076 Atomic orbital electron populations 1.81290 1.11461 1.09916 1.09459 1.24403 0.91089 0.93122 0.93270 1.15378 0.85754 1.14422 1.11312 1.23704 0.88560 0.97268 0.97491 1.77200 1.20256 1.08391 1.05567 1.46881 1.06160 1.33991 1.30098 0.68801 1.18312 0.86504 0.89158 0.88562 1.43335 1.12835 1.39378 1.34200 1.19007 0.84084 0.79232 0.80173 1.90450 1.17217 1.67132 1.69348 1.18468 0.94296 1.10174 1.07428 1.20446 0.92917 0.97359 0.97126 1.20989 1.00070 1.01065 0.97246 1.17843 0.91093 0.88934 0.89486 1.19992 0.99551 1.09930 1.15688 0.89209 1.26206 0.96522 0.96841 0.95643 1.69706 1.13075 1.23837 1.31378 0.86168 0.78650 0.81044 0.80037 1.18218 1.19783 1.18405 1.20722 0.95588 1.05334 1.04085 1.20333 0.97213 0.92944 0.92472 0.78692 0.73137 0.89267 0.85905 0.89619 0.87952 0.87745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.88 18.54 41.84 0.78 -6.10 16 2 C 0.30 4.04 15.57 -22.47 -0.35 3.69 16 3 C -0.25 -3.17 6.00 -106.46 -0.64 -3.81 16 4 C 0.12 1.31 11.99 -16.98 -0.20 1.11 16 5 N -0.29 -3.79 12.61 30.86 0.39 -3.40 16 6 N -0.45 -6.41 6.95 31.48 0.22 -6.19 16 7 H 0.46 6.68 6.42 -182.74 -1.17 5.51 16 8 C 0.41 5.85 7.76 -153.31 -1.19 4.66 16 9 N -0.65 -9.85 5.33 -11.99 -0.06 -9.91 16 10 C 0.57 10.39 7.72 -12.46 -0.10 10.29 16 11 O -0.56 -10.68 13.85 5.28 0.07 -10.60 16 12 C -0.30 -6.01 5.89 -104.74 -0.62 -6.62 16 13 C -0.06 -1.18 9.47 -39.60 -0.38 -1.56 16 14 C -0.17 -3.91 8.63 -39.27 -0.34 -4.25 16 15 C 0.13 3.02 5.57 -106.80 -0.60 2.42 16 16 C -0.43 -9.65 9.04 -37.76 -0.34 -9.99 16 17 H 0.09 1.92 7.91 -52.49 -0.42 1.51 16 18 C 0.07 1.53 5.14 -17.31 -0.09 1.44 16 19 N -0.76 -16.78 10.95 55.56 0.61 -16.17 16 20 Si 0.92 15.88 29.60 -169.99 -5.03 10.85 16 21 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 22 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 23 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 24 C -0.24 -5.17 9.73 -39.27 -0.38 -5.55 16 25 C -0.01 -0.22 9.52 -39.60 -0.38 -0.59 16 26 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.43 5.96 6.55 -40.82 -0.27 5.69 16 28 H 0.09 1.51 6.37 -52.49 -0.33 1.18 16 29 H 0.12 2.81 6.16 -52.48 -0.32 2.49 16 30 H 0.29 5.83 8.29 -40.82 -0.34 5.49 16 31 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.10 2.05 7.63 -52.49 -0.40 1.65 16 LS Contribution 296.66 15.07 4.47 4.47 Total: -1.00 -25.09 296.66 -7.05 -32.14 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -2.89 Total: 13.69 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -5.60 Total: -8.77 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 1.93 Total: -41.78 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.60 kcal Atomic # 14 Polarization: 15.88 SS G_CDS: -5.03 Total: 10.85 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.09 -7.05 -32.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638660130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.962 kcal (2) G-P(sol) polarization free energy of solvation -25.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds